GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:02:20

Sequence gi568815577r:28776388_28985345 : 208958 bp : 38.31% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  19301  19440  140  1  2   78   76    96 0.054   7.06
 1.02 Term +  21653  21824  172  2  1   91   55    91 0.078   2.42
 1.03 PlyA +  22045  22050    6                               1.05

 2.00 Prom +  38521  38560   40                              -1.45
 2.01 Init +  40431  40466   36  2  0   71  119    52 0.437   6.67
 2.02 Term +  42224  42355  132  1  0  106   38    71 0.827   1.01
 2.03 PlyA +  42461  42466    6                              -0.45

 3.00 Prom +  44191  44230   40                              -4.55
 3.01 Init +  53991  54033   43  2  1   80  127    -6 0.554   3.38
 3.02 Term +  55064  55410  347  0  2    5   45   254 0.542   6.47
 3.03 PlyA +  56852  56857    6                               1.05

 4.00 Prom +  57280  57319   40                              -9.75
 4.01 Init +  58421  58463   43  1  1   86   68    58 0.723   2.29
 4.02 Intr +  59133  59283  151  1  1   75   88   106 0.541   7.60
 4.03 Term +  62984  63269  286  2  1   28   42   195 0.594   2.79
 4.04 PlyA +  63666  63671    6                               1.05

 5.09 PlyA -  65865  65860    6                               1.05
 5.08 Term -  74496  74410   87  0  0  120   39     8 0.491  -4.22
 5.07 Intr -  74995  74810  186  1  0   53   55   225 0.819  14.66
 5.06 Intr -  76182  76023  160  2  1   61   91   123 0.647   8.97
 5.05 Intr -  97210  97128   83  1  2   19  111    73 0.186   0.22
 5.04 Intr - 103566 103483   84  0  0   47   83    70 0.672   1.50
 5.03 Intr - 105863 105773   91  1  1   90   91   115 0.990  11.08
 5.02 Intr - 106684 106598   87  0  0   99  103    -7 0.503   0.07
 5.01 Init - 108958 108825  134  1  2   62   49   300 0.690  23.16
 5.00 Prom - 109451 109412   40                              -5.75

 6.04 PlyA - 109792 109787    6                               1.05
 6.03 Term - 111491 111268  224  0  2  -18   38   303 0.996  10.80
 6.02 Intr - 111882 111525  358  0  1    8   56   416 0.922  24.30
 6.01 Init - 112766 112323  444  2  0   25   77   556 0.571  44.26
 6.00 Prom - 124252 124213   40                              -3.25

 7.19 PlyA - 126359 126354    6                               1.05
 7.18 Term - 127149 126708  442  2  1    7   44   548 0.926  36.04
 7.17 Intr - 134006 133863  144  1  0   83   45   128 0.246   6.48
 7.16 Intr - 143528 143473   56  2  2   74   72    17 0.065  -4.44
 7.15 Intr - 154935 154768  168  0  0   97  111     3 0.860   2.72
 7.14 Intr - 156277 156083  195  1  0   84  111   106 0.983  11.19
 7.13 Intr - 165019 164833  187  0  1   34   99   101 0.531   4.57
 7.12 Intr - 166949 166875   75  1  0   71   61   115 0.946   4.81
 7.11 Intr - 175877 175773  105  1  0  124   61    55 0.959   4.81
 7.10 Intr - 176963 176830  134  2  2   54  110    46 0.215   1.92
 7.09 Intr - 181039 180945   95  2  2   62   68    90 0.158   3.16
 7.08 Intr - 183310 183071  240  2  0   85   90    81 0.378   4.60
 7.07 Intr - 184319 184130  190  2  1   79   58    46 0.216  -1.06
 7.06 Intr - 190792 189983  810  1  0   78   61   365 0.741  23.50
 7.05 Intr - 193126 193079   48  1  0   54   70    75 0.403   0.26
 7.04 Intr - 195057 194884  174  0  0   84   87    53 0.756   4.01
 7.03 Intr - 204912 204732  181  2  1   39   76   135 0.989   6.35
 7.02 Intr - 205981 205929   53  1  2   85   92    52 0.993   2.09
 7.01 Intr - 208535 208305  231  2  0   52   84   264 0.998  19.45

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  20843  20761   83  0  2  123   38    72 0.883   2.58
S.002 Init -  23717  23633   85  2  1   90   82    77 0.819   8.33


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_1|103_aa
MMIHKIYSEEPNVQEMQTICSVNLEHRFENLEADRKGNLVYNFVIIRLSFCQQPVLRIQA
SDPVLSFRSPFSPSFIKQQPLLSVLLCTRSIDRFRVCEAQLGV

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_1|312_bp
atgatgattcataaaatatattcagaggagcccaatgttcaggaaatgcaaactatctgc
agtgtgaatttggagcacaggtttgaaaacttagaggctgatcgaaaaggaaatttggtt
tacaattttgtaattatcaggcttagtttctgccaacagccagtcctgaggatccaggca
agtgaccctgtgttatctttccgctctcccttctctccttcgttcatcaagcagcaaccg
ctactttcagtgcttctctgcacacggagtatagacaggttccgagtatgtgaagctcag
cttggggtttga

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_2|55_aa
MNGASRSFSSCLEFSANPYLRKLQGGVGLMGLPHLGPTAVSLEPHRDCITVRGAQ

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_2|168_bp
atgaacggtgcatccaggagcttcagcagctgcctggaattttcagcaaatccatatctt
agaaagctgcagggaggagttggcctgatgggcttgccacacttgggccccactgcagtt
tccctggagcctcacagggactgcatcacagtccgtggggctcaataa

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_3|129_aa
MVRRACFPFTFCHDERKERKKERKKERKKERKKERKKERRKEGKKERRKEGKKERKKEGK
KERRKEGKKERRKEGRKERKKERKKERKKERKKEGRKEGRKEGRKEGRKERKKERKKERK
KETVSPFKQ

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_3|390_bp
atggtgagacgtgcttgcttccccttcaccttctgccatgacgaaagaaaagaacgaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagg
aaagaaggaaagaaggaaagaaggaaagaaggaaagaaggaaagaaagaaagaaggaaag
aaggaaagaaggaaagaaggaaagaaggaaagaaggaaagaaggaaggaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaacagtatcacctttcaaacagtga

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_4|159_aa
MVGVRWALQFARELEPTQMRRNQKTNPGNTTKQGSSTPPKNHISSPAMDPNQEEIPDLPE
KEFRRAIRQEKEIKRIQISKEEVKLSLIANNMIDYLENPKDSSRKLLELIKEFSKVSRYK
INVHKSVALPYTKSNQADNQIKNTTPFTIAAKIKYLGIY

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_4|480_bp
atggtgggagtgagatgggcccttcagttcgcacgggagctggagcctacccaaatgaga
aggaaccagaaaaccaacccaggtaatactacaaaacaaggctcttcaacacccccaaaa
aaccacattagttcaccagcaatggatccaaaccaagaagaaatccctgatttacctgaa
aaagaattcaggagagccatcagacaagagaaagaaataaagcgcattcaaatcagtaaa
gaggaagtcaaactgtcactgattgctaacaatatgattgattaccttgaaaaccctaag
gactcctccagaaagctcctagaactgataaaagaattcagcaaagtttccagatacaag
attaatgtacacaaatcagtggctcttccatacaccaagagcaaccaagcagacaatcaa
atcaagaacacaaccccttttacaatagctgcaaaaataaaatacttaggaatatactaa

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_5|303_aa
MAGENFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEICLEVGSGSGVVS
AFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLV
FNPPYVVTPPQEVNGKLQPNSDRTTNDPDLSGMKVWVTTRTPLASTRATVDWGNGNDQTF
QGLLDTGSELTLTPGDTKCHCRSPVKVGAYGGQWGPEQEKVLQQVQAAVQAVLTLGPYDP
SDPMVLEVSVADRDAVWSLWQAPVGETQWQPLGFGPALIASWGVHYNQSIEEEKTRAWLI
NSP

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_5|912_bp
atggcaggggagaacttcgctacgccgttccacgggcacgtgggccgcggcgccttcagc
gacgtgtacgagcccgcggaggacacgtttctgcttttggacgcgctggaggcagcggct
gccgaactggcaggagtggaaatatgcctggaagtagggtcagggtctggtgtagtatct
gcattcctagcctctatgataggccctcaggctttgtacatgtgcactgatatcaaccct
gaggcagcagcttgtaccctagagacagcacgctgtaacaaagttcacattcaaccagtt
attacagatttggtcaaaggcttgctaccaagattgaccgaaaaagttgatcttctggtg
tttaatcccccctatgtagtgactccacctcaagaggtcaatggaaaactacagcctaat
tcagacaggaccactaatgatccagacctttcaggaatgaaggtttgggtcaccaccagg
acacctctagcttctaccagggcaactgtggattggggaaatggaaatgatcagacattt
cagggactactggacactggctctgagctgacattgactccaggggacacaaaatgtcat
tgtcgttctccagttaaagtaggggcttatggaggtcagtggggtccagaacaagagaag
gttctgcaacaggtccaggctgctgtgcaagctgttcttacacttgggccatatgaccca
tcagatccaatggtgcttgaggtgtcggtggcagatagggatgccgtttggagcctttgg
caggcccctgtaggtgaaacacagtggcagcctctaggatttggacctgcactgatagct
tcttggggagttcactataatcaatcgatagaggaagagaagacaagggcctggttaata
aactccccttag

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_6|341_aa
MLQGVDLLLTAVAITMGPKGKTVITEQNWGSPKVTKDGVTVARSIDLKDKYKNIAAKLVQ
DVANNTNEEAGDGTTTATVAKEVFKKFSKGANPVEIKRSVMLAVDAVIAELKKQSKPVTT
PEEIAQVATISANGDKEIGNLISDAMKKVGNVNSKKISSVQSIVPDLEIANAHRKLLVII
AENVDGETLSTLILNRRKLGLQVVAVKAPGFGDNRKNHLKGMTIATGGAVFGEEELTSNL
EDVQPHDLGEVGEVTVIKDDAMLLKGKEIIEQLDVTTSEYEKEKLNEQLAKLSDGVAVLK
VSGTSHVEVNEKKNRVTDALNATRAAVEEGIVLGGGCTLLR

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_6|1026_bp
atgcttcaaggtgtagaccttttactcactgctgtagccattacaatggggccaaaggga
aaaacagtgattactgagcagaactggggaagtcccaaagtaacaaaagatggtgtgact
gttgcaaggtccattgacttaaaggataaatataaaaatattgcggctaaacttgttcaa
gatgttgccaataacacaaatgaagaggctggggatggcactaccactgctactgttgcc
aaggaagtcttcaagaagtttagcaaaggtgctaatccagtggaaatcaagagaagtgtg
atgttagctgttgatgctgtaattgctgaacttaaaaagcagtctaaacctgtgaccacc
cctgaagaaattgctcaggttgctacaatttctgcaaatggagacaaagaaattggcaac
ctaatttccgatgcaatgaaaaaggtcggaaatgtgaattccaagaaaatttctagtgtc
cagtccattgtacctgatcttgaaattgccaatgctcaccgtaagcttttggtcataatt
gctgaaaatgttgatggagaaactctaagtacactcattttgaataggcgaaaacttggt
cttcaggttgtagcagtcaaagctccagggtttggtgacaatagaaagaaccaccttaaa
ggtatgacaattgctactggtggtgcagtgtttggagaagaggagttgacctcaaatctt
gaagatgttcagcctcatgacttaggagaagttggagaggtcactgtgatcaaagatgat
gctatgctcttaaaaggaaaagaaatcattgagcagttggatgtcacaactagtgaatat
gaaaaggaaaaactgaatgaacagctggcaaaactttcagatggagtagctgtgctgaag
gttagtgggacaagtcacgttgaagtgaatgaaaagaaaaacagagttacagatgccctt
aatgctacaagagctgctgttgaagaaggcattgttctgggagggggttgtaccctactt
cgatga

>gi568815577r:28776388_28985345|GENSCAN_predicted_peptide_7|1175_aa
DHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFP
PSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKRL
LCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVSALCQRIPQLMKEEAS
KVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEQNLGEEEIEQMLVNDQLIPFIDAVLKD
PGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICVAKISEPEAD
VESVLGVSNLLQVLQKPKSSLKSSKKKNGKVRFADEILESNKENEKCVSSEGEKIEGWEL
TTEPSLTHNSSGLLSPLRKKPLEDLVCKLADISINYVNERKSEQHLRFLSTLLDSFSSSR
VFKMLLGDEKQSIVQAKPLEIAKLVQKNPAVQFLYQKLIGWLNEDQRKDFGFLVDILYSA
LRCCDNDMERKKVLDDLTKACPSSDKHALVTPWLKGDILGEKLVNLADCLCNEDLESRVS
SESHFSERWTLLSLVLSQHVKNDYLIGDVYVERIIVRLHETLFKTKKLSEAESSDSSVSF
ICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAQSKEKTHLPESEDSYLMGVYIGSVMPN
DSEWEKMRQSLPMQWCEELDNPPIFLIGFCEILQKMNITYDNLRVLGNTSGLLQLLFNRS
REHGTLWSLIIAKLILSRSISSDEVKPHYKRKERLMPELPQYDQDNLKSYGDEEEEPALS
PPAALMSLLSIQEDLLENVLGCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASS
QVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLS
TYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSA
CLVSQPSPNARNVEKTALLLGTSSKAEEGLEKNMKKKSLSEFKVWQEYFPKPIQLTINDN
SISIKSKRSAKCVEEAYTLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDVEAVLKKEVGD
IEASTEMSLRGFQSVESGANNVAFIRTLGKEPEKLVHHILQDEYKTKKTQVILRMLPISG
TCKAFLKDMKKYAETFLEPWFKAPNKGTFQIVYKS

>gi568815577r:28776388_28985345|GENSCAN_predicted_CDS_7|3528_bp
gatcatgaccgtcgcgtccgagaagccacacaacaagcttttgaaaaacttatccttaaa
gtaaagaaacagttggctccctacttaaaaagtttaatgggatattggctaatggctcag
tgtgatacttacacaccagctgcgtttgcagcaaaagatgcatttgaagcggcttttcct
ccaagcaagcaacctgaagccatagcattttgtaaggatgaaattacaagtgtgctgcag
gatcatcttataaaagaaacacctgatacactcagtgacccgcaaactgttccagaggaa
gaaagagaagctaaattctaccgggttgtaacttgttccttattggcattaaagagatta
ctttgccttttacctgataatgagcttgattctctggaggagaaatttaagtctctttta
tcacagaataagttttggaagtatggaaaacacagtgtacctcagattcgctcagcttat
tttgagttagtctctgcattgtgccagcgcattccacagttgatgaaagaggaagcatcc
aaagtgagcccatcagttctacttagcattgatgacagtgacccaattgtctgcccagct
ctctgggaagctgtactctatacacttacaactattgagcaaaacttaggtgaggaagag
attgaacagatgctcgtcaatgatcagttgatcccttttattgatgcagttctcaaagac
ccaggattgcaacatgggcagctatttaaccatttagcagaaactctaagttcctgggaa
gccaaagcagacacggaaaaagatgaaaaaacagctcacaacttggagaacgtactgata
catttctgggaaagactgtcagagatctgtgttgcgaaaatcagtgagccagaagctgat
gttgagtccgttttgggtgtatctaacctattacaggtgcttcagaagccgaagagctca
ttgaagtcaagtaaaaaaaaaaatggtaaggttagatttgctgatgagatacttgaaagc
aataaagagaatgaaaaatgtgtatcttcagaaggagagaagattgaaggctgggaatta
acaactgaaccttctctcactcataattcttcaggccttttgtctcctctaaggaaaaaa
cctttggaagacttagtctgtaaactcgcagatataagtattaattatgtcaatgaacga
aagtcagagcaacatctaaggtttctttctactctgcttgactccttttcttcaagccga
gtatttaaaatgctacttggtgatgaaaaacagagtattgtccaagccaaacctcttgaa
atagccaagcttgtacaaaaaaatcctgcggtgcagtttttataccagaaactgataggt
tggctaaatgaagatcaaaggaaggattttggtttcctggtggacattttgtacagtgct
ctccggtgctgtgacaatgatatggaaagaaaaaaagtcttggatgatctaaccaaggca
tgtcctagttcagataaacatgctttagtaactccttggctcaaaggcgatatccttggt
gagaaattggtcaacttggcagattgtctttgtaatgaggacttggaatccagggtatct
tcagaatctcacttctcagaaagatggactcttctaagcttggtattatcccaacatgtt
aaaaatgattacttgattggagacgtatatgttgaaagaatcattgttagacttcatgaa
actttattcaaaacaaagaaattatcagaagctgaaagcagtgactcatcagtgtctttt
atctgtgatgtggcctataactatttcagctcagcgaaaggatgcttgctaatgccatca
tctgaagatttattattaactctctttcagttatgtgctcagagcaaagaaaaaacacat
ttgccagagagtgaagattcttatcttatgggagtttatattggaagtgtaatgccgaac
gacagtgaatgggaaaagatgaggcagtctcttcctatgcagtggtgtgaagaattagat
aacccacctatttttctaattggattttgtgaaatacttcaaaaaatgaatattacgtat
gataacttacgtgtacttggtaatacgtcgggccttttgcagctgttatttaacaggtcc
agagaacatggcacactgtggtctcttattattgctaagttgatcctttcccgaagcatt
tcatctgatgaagtaaaaccacattataagagaaaagaaagattgatgcctgaattacca
cagtatgatcaggataatctaaagtcatacggagatgaagaagaagagccagccttgtca
ccaccagcagcactgatgtctcttcttagcattcaagaggacttactagaaaatgttttg
gggtgtattcctgttggacagatagttactattaaaccactgagtgaagacttctgttat
gttctgggataccttctcacttggaaattaatactaactttcttcaaagctgcatcatca
caggttaaagctcgagctactactcgagaggtaatggctacttatactattgaggacata
gttattgaacttataatacaactgccttcaaattatccactgggttcaataatagtagaa
agtgggaaaagagtaggagtagctgttcagcagtggcggaactggatgctgcagttaagc
acttacctcacccatcagaatggaagtattatggaaggcttagctttatggaaaaataac
gtagacaaacgttttgagggtgttgaagattgcatgatctgtttctcagtcattcacggt
ttcaactattcccttcccaaaaaagcctgtagaacatgcaagaaaaaattccattcagcc
tgcttggtgagccaaccaagtcctaatgctagaaatgttgaaaaaactgccttactcctt
gggacttcttcaaaagcagaggaagggctggagaaaaacatgaaaaagaaaagcttatcg
gaattcaaggtttggcaagaatactttcccaagcccatccagcttaccatcaatgataat
tcaatttcaatcaaatcaaagagaagcgccaagtgtgtggaggaggcttacaccctgctc
aacgaatatggcgatgacatgtatgggccagaaaagtttacagacaaggatcagcagccc
tctggaagtgagggagaagatgatgatgtggaggctgtcttgaagaaagaagttggtgac
attgaggcatctacagagatgagcctaagaggattccagtcagtggaaagtggagcaaat
aacgtcgccttcatcaggacacttgggaaagaacctgagaaactggtgcatcatattctc
caggatgagtacaaaaccaagaagactcaagttattctacgaatgttacccatctcaggc
acatgcaaagcttttttaaaagatatgaaaaaatatgcagaaacatttttggaaccctgg
tttaaagctccaaacaaagggacatttcagattgtgtacaaatcttga