GENSCAN 1.0 Date run: 8-Nov-116 Time: 05:16:35 Sequence gi568815596f:178012547_178226173 : 213627 bp : 39.31% C+G : Isochore 1 ( 0 - 43 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.02 Intr - 1914 1756 159 0 0 109 69 188 0.890 18.26 1.01 Init - 15640 15551 90 1 0 61 81 71 0.366 4.24 1.00 Prom - 27210 27171 40 -4.95 2.00 Prom + 36204 36243 40 -4.05 2.01 Init + 37599 37827 229 2 1 60 69 166 0.836 10.48 2.02 Term + 38023 38243 221 2 2 -23 54 192 0.451 0.92 2.03 PlyA + 38731 38736 6 1.05 3.00 Prom + 38858 38897 40 -7.15 3.01 Sngl + 38933 40246 1314 1 0 56 40 295 0.631 17.30 3.02 PlyA + 40568 40573 6 1.05 4.06 PlyA - 42512 42507 6 1.05 4.05 Term - 46944 46871 74 1 2 64 48 84 0.612 -0.91 4.04 Intr - 47440 47305 136 1 1 77 77 90 0.858 6.02 4.03 Intr - 49867 49816 52 0 1 114 65 26 0.590 0.89 4.02 Intr - 55439 55351 89 2 2 6 85 104 0.403 -0.25 4.01 Init - 59891 58980 912 2 0 100 91 805 0.463 75.54 4.00 Prom - 75467 75428 40 -2.65 5.00 Prom + 78077 78116 40 -6.95 5.01 Init + 78865 78947 83 0 2 59 93 61 0.021 4.19 5.02 Intr + 95701 95874 174 1 0 56 -1 201 0.410 6.13 5.03 Intr + 99817 100729 913 1 1 47 92 794 0.853 66.04 5.04 Intr + 103716 103838 123 2 0 69 63 201 0.998 15.56 5.05 Intr + 105509 105635 127 1 1 75 72 166 0.990 13.03 5.06 Intr + 107741 107863 123 0 0 58 111 47 0.919 3.64 5.07 Intr + 110976 111105 130 1 1 111 89 66 0.996 7.83 5.08 Intr + 111291 111366 76 0 1 38 115 40 0.846 0.30 5.09 Intr + 111581 111744 164 1 2 81 99 82 0.991 6.45 5.10 Term + 113438 113630 193 2 1 71 37 171 0.953 6.21 5.11 PlyA + 113822 113827 6 1.05 6.00 Prom + 118079 118118 40 -3.35 6.01 Init + 137681 137840 160 1 1 83 91 60 0.369 5.83 6.02 Intr + 144868 145029 162 2 0 86 60 80 0.368 4.03 6.03 Intr + 161440 161612 173 2 2 -12 79 155 0.006 3.34 6.04 Intr + 163858 163919 62 0 2 63 93 65 0.159 1.11 6.05 Term + 176066 176165 100 2 1 106 36 74 0.236 0.62 6.06 PlyA + 176909 176914 6 1.05 7.06 PlyA - 178200 178195 6 1.05 7.05 Term - 179178 179136 43 2 1 72 44 106 0.018 0.25 7.04 Intr - 182877 182711 167 0 2 107 51 172 0.049 13.24 7.03 Intr - 192139 191982 158 2 2 95 105 26 0.280 3.81 7.02 Intr - 205833 205714 120 1 0 65 37 79 0.108 0.05 7.01 Intr - 208337 208259 79 2 1 61 60 101 0.144 2.81 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_1|83_aa MEKEGFRDAGTYSGEGNVYGTNQLQGSTWKDRRFNDEIDKLTGYKTKSLLCMPIRSSDGE IIGVAQAINKIPEGAPFTEDDEK >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_1|249_bp atggagaaggaaggcttcagggatgcagggacttatagtggggaagggaatgtgtatgga accaaccagctccagggatccacctggaaggatcgacgattcaatgatgaaatcgacaag ctaactggatacaagacaaaatcattattgtgcatgcctatccgaagcagtgatggtgag attattggtgtggcccaagcgataaataagattcctgaaggagctccatttactgaagat gatgaaaaa >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_2|149_aa MKLPEERSGSNICRSAIFAVLQPLLVIPRQTGSGVDLQQTPTDLQQRVLTVRRKTNKQKG HPHQNPICTSPSSKTKGGCSNPCKEAKNLEKRLEEWLNRINSVEKTLNDLMELKTMAREL RDACTRFSSRFDQLEERVSVIEDQMNEMK >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_2|450_bp atgaagcttccggaagaacgatcaggcagcaacatttgccgttctgcaatatttgcggtt ctgcagcctctgctggtgatacccaggcaaacagggtctggggtggacctccagcaaact ccaacagacctgcagcagagggtcctgactgttagaaggaaaactaacaaacagaaagga catccacaccaaaaccccatatgtacatcaccatcatcaaagactaaaggagggtgttcg aacccctgcaaagaagctaaaaaccttgaaaaaagattggaagaatggctaaatagaata aacagtgtagagaagaccttaaatgacctgatggagctgaaaaccatggcacgagaacta cgtgacgcatgcacaagattcagtagccgattcgatcaactggaagaaagggtatcagtg attgaagatcaaatgaatgaaatgaagtga >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_3|437_aa MTGSNSHITILTLNVNGLNAPIKRHRLANWIKSQDPSVCYIQETYLMCRDTHRLKIKGCR KIYQANGKQRQKKAGVAILVSDKTDFKPTKIRRDKEGHYIMVKGSIQQEELTILNIYAPN TGEPRFIKQVLRDLQRDLDSHTIIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLI DIYRTLHRKSTEYTFFSAPHHTYSKIDHIVGSTALLSKCKRTEIITNCLSDHSAIKLELR IKKLTQNCSTTWKLNNLLLNDYWVHNEMKAEIKTLFETSENKDTTYQNLWDTFKAVCRGK FIALNAHRRKQERSKIDPLTSQLKELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQK INESRSWFFEKINKIDRLLARLIKKKRKKNQIDAIKNDKGDITTNPTEIQTTIREYYKHL YANKLENLEEMDKFLDT >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_3|1314_bp atgacaggatcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgct ccaattaaaagacacagactggcaaattggataaagagtcaagacccatcagtgtgctat attcaggagacctatctcatgtgcagagacacacataggctcaaaataaagggatgcagg aagatctaccaagcaaatggaaaacaacgacaaaaaaaagcaggggttgcaatcctagtc tctgataaaacagactttaaaccaacaaagatcagaagagacaaagaaggccattacata atggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaat acaggagaacccagattcataaagcaagtccttagagacctacaaagagacttagattcc cacacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgaga cagaaagttaacaaggatacccaggaattgaactcagctctgcaccaagcagacctaata gacatctacagaactctccaccgcaaatcaacagaatatacattcttttcagcaccacac cacacctattccaaaattgaccacatagttggaagtacagcactcctcagcaaatgtaaa agaacagaaattataacaaactgtctctcagaccacagtgcaatcaaattagaactcagg attaagaaactcactcaaaactgctcaactacatggaaactgaacaacctgctcctgaat gactactgggtacataacgaaatgaaggcagaaataaagacattatttgaaaccagtgag aacaaagacacaacataccagaatctctgggacacatttaaagcagtgtgtagagggaaa tttatagcactaaatgcccataggagaaagcaggaaagatctaaaattgaccccctaaca tcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaa gaaataactaagatcagagcagaactgaaggagatagagacacaaaaaacccttcaaaaa atcaatgaatccaggagctggttttttgaaaagatcaacaaaattgatagactgctagca agactaataaagaagaaaagaaagaagaatcaaatagatgcaataaaaaatgataaaggg gatatcaccaccaatcccacagaaatacaaactaccatcagagaatactataaacacctc tatgcaaataaactagaaaatctagaagaaatggataaattcctggacacataa >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_4|420_aa MAASRLDFGEVETFLDRHPELFEDYLMRKGKQEMVEKWLQRHSQGQGALGPRPSLAGTSS LAHSTCRGGSSVGGGTGPNGSAHSQPLPGGGDCGGVPLSPSWAGGSRGDGNLQRRASQKE LRKSFARSKAIHVNRTYDEQVTSRAQEPLSSVRRRALLRKASSLPPTTAHILSALLESRV NLPRYPPTAIDYKCHLKKHNERQFFLELVKDISNDLDLTSLSYKILIFVCLMVDADRCSL FLVEGAAAGKKTLVSKFFDVHAGTPLLPCSSTENSNEVQVPWGKGIIGYVGEHGETVNIP DAYQVFDGLGCEKQQDVLLDELRAGKGMTLKGYREPLSERVHTLLLCATAKTLEPRDVAI AKCREAGKCSFNLTQSGPQPQSHPVTACRQSPGPLSGQPLQAATRPMVDGQAPKDDNLCA >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_4|1263_bp atggcagcctcccgcctggactttggggaggtggaaactttcctggacaggcacccagag ttgtttgaagattacttgatgcggaaggggaagcaggagatggttgaaaagtggctgcag aggcacagtcagggtcagggggctttaggtccaaggccctctttggctggtaccagcagc ttggctcacagcacctgcagaggtggcagcagcgttggtggtggcactggaccaaatggc tctgcccacagccagccccttcccggtggcggggactgtggtggggttcccttgagtccc agctgggccggtggcagcaggggcgatgggaacctgcagcggagagcttctcagaaagag ctaaggaagagttttgcccgctccaaggccatccacgtgaacaggacctacgatgaacag gtgacctcccgggctcaggaacccctgagtagtgtacgacggagggcacttctccggaag gcaagctccctgccccccaccacagcccatattctcagtgcgctgctggaatcgagagtg aatctgcctcggtatccccctacagccatcgactacaagtgccatctgaaaaagcataat gagcgtcagttctttctggaattggtcaaagatatctccaatgaccttgacctcaccagc ctgagctacaagattctcatctttgtctgccttatggtggatgctgaccgctgctctctt ttcctggtggaaggggcagctgctggcaagaagaccttggtctccaaattctttgatgtg catgcaggaacacctctgctgccttgcagcagcacagagaactcaaatgaggtgcaggtc ccctggggcaaaggtatcattggctatgtcggggagcatggagaaacggtcaacattcct gatgcctaccaggtgtttgatgggcttgggtgtgaaaagcagcaggatgttttgttagat gaactgagagcaggaaaggggatgacgctgaagggttacagagaaccactaagtgagagg gtgcacactctgttactctgtgcaactgctaagactctagaacccagggatgtggccata gccaagtgcagggaggctggcaaatgtagcttcaacctgacccagagtgggccccagccc cagtcccatccagtcactgcatgccgtcaaagtccagggcctttaagtggccagcccctg caggcagccacccgacccatggtagatgggcaagccccaaaagatgacaacctctgtgcc tga >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_5|701_aa MVKSRKELEQKIQVLVLVPDLSRCQHRSSHLEQPPGQSPRLNFEAGDPERAPHALGCKRS RTRATSDRQPMASRDPVPLLIGPQIPGRCRPLPGRPHPARLDSAWRRTPLSPGSGAPSRQ RLGCETAAVADTAEAKSSEAPAFGWSTMDEAGSSASGGGFRPGVDSLDEPPNSRIFLVIS KYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGP NDTKPIKVRVPGSGCPRGKEWASWTSLHLLLCRGEGGVEHPFPAADQTAPGLGTGAALRR GSPPTKLRRVAGKGTGCGVFAPRERTRQPRPPGDRTAVAGLPLSLALTNPPALEFTAKLV LAYFEYFSDLPLSDAQISIYKKRKNSTFPQVFIAQSRSSGSHRDVEDEELTRIFVMIPKS YTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFRAILA EPKNKASESSEQDYYSNMRQEALGHEPRVNMFPFGHGVVQYFNVASAIYAKYKLHGFQYP PGNRIGVSFIDDGSNATEKMATQMVAAQLASMVWNNPSQQQFMQFGGSSGSQLPQIQTDV VLPSCKKKAPAETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYA DRISANDAIATLHGKILNGVRLKVMLADSPREESNKRQRTY >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_5|2106_bp atggtgaaaagccgcaaggaattggagcagaagatccaagttttggttctggtgccagat ctctctaggtgtcaacacagaagcagtcacctggaacagccacctggccagagtccacgc ctcaacttcgaggctggcgatccagaaagagcacctcacgccctgggctgcaagcgcagc cggacgcgcgcgaccagtgatcgccagccaatggcaagccgggacccggtcccactgctg attggcccccagatcccggggcgctgcaggccgctccccggaaggcctcatcctgcgcgg ctggacagcgcctggcgccggactcctctttctcccggaagcggagcaccgagccggcaa aggcttgggtgtgagacagcagcggtggcagacaccgcagaagcaaagagcagtgaggct cctgcattcgggtggagcaccatggacgaagctggcagctctgcgagcggcgggggcttc cgcccgggcgtggacagcctggacgaaccgcccaacagccgcatcttccttgtgatcagc aagtacacacctgagtcggtgctgagggagcgcttctcgccttttggcgacatccaggac atctgggtggtgcgggacaagcacaccaaggagtccaagggcattgctttcgtcaagttc gcccgcagctcacaggcctgcagggccatggaggagatgcatggccagtgcctcggcccc aacgacaccaagcccatcaaggtgcgggtgcccgggtcggggtgccctcgggggaaggag tgggcctcttggacctcccttcacctgctgctctgccggggtgagggaggagtggaacat ccgttcccggcagctgaccagacagcacctggcttggggacaggggctgctttgaggaga ggctcccctcccacgaagctgcgccgggttgcagggaaggggacgggatgcggagtgttt gccccacgagagcggacccggcagccgcggccaccgggtgacagaacagcagtggctggg cttcccctctccctcgccctcactaatccaccagctcttgagttcactgccaaactcgtc ctagcctactttgagtacttttctgaccttcctctctcagatgcccagatttccatatat aaaaaacggaaaaactctacttttcctcaggttttcattgctcagtcccgatcatctgga agtcaccgagatgttgaagatgaagaacttacaagaatctttgttatgataccaaagtcc tacacagaagaagatctgcgggaaaaatttaaggtgtatggagatatcgagtattgcagc attattaagaataaagtgactggagaaagtaaaggtttgggctacgtacgatacttaaaa ccatcacaagctgcccaagcaatagaaaactgtgatcgaagttttagagcaatcttggct gaacctaaaaataaagcatctgaatcctctgaacaagattattatagtaatatgaggcaa gaagctttgggacatgaacctagagtaaatatgtttccatttggtcatggagtggttcag tattttaatgtagcatcagctatttatgcaaaatacaaattacatggatttcagtaccct cctgggaaccgaataggtgtttccttcattgatgatggaagtaatgcaacagaaaaaatg gcaacacagatggtagctgcacagcttgcatcaatggtgtggaataacccaagtcagcaa caatttatgcaatttggaggaagctctggatcacagttgcctcaaatccagacagatgtt gtacttccatcatgcaaaaaaaaagctcctgctgaaactcctgtgaaagaaagacttttt attgtgtttaatcctcatcctttacctttagacgtattagaagatatattctgtcgtttt ggtaacctgatcgaagtttaccttgtgtcaggaaaaaatgtggggtatgccaagtatgcc gatagaataagtgctaatgatgccattgccactctacatggaaagattctgaatggggtg agacttaaagttatgctggcagattcgccaagagaagaatctaacaaacggcaaagaact tactga >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_6|218_aa MDGAGSHHPQQTNTGTENQTPHVLAHKCELNNENTWTQEGEQHIRGLSLLVRAGLKVLFP KQQGMLWTRQPSAVSSFQEFPQLKRDSLPKVTVPFWGGLHPITGQCRDRYENASSSYKGA AVVAAPLGEHSGMDSDQLHQLIPVLAITGEKGGPWWQKLQVFAAVISSERKEKWKVRITI LDIFGSLAHLETIRNATAKVTLVNMSQTIPFLCMESYD >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_6|657_bp atggatggagctggaagccatcatcctcagcaaactaacacaggaacagaaaaccaaaca ccacatgttctcgctcataagtgtgagctgaacaatgagaatacatggacgcaggaaggg gaacaacacatacggggtctgtccttgctggtgagggcaggactcaaggttttattcccc aagcagcaaggaatgctgtggacaaggcagccctcagctgtcagttcctttcaggaattt cctcagttgaagagagattccttgcctaaggtgacagtccctttctggggtggtctacat ccaatcactggtcaatgcagagataggtatgagaatgccagctccagctacaagggggct gcagtggtagctgctcctcttggagagcatagtggcatggactcagatcagctccatcag ctgataccagtgttggcgataactggggagaagggtggtccttggtggcaaaagctgcag gtgtttgcagcggtgatttccagtgagagaaaagagaaatggaaagtccgcattactata ctggatatatttggaagccttgcccaccttgagactattcgcaatgcaacagccaaagtc actctcgtaaacatgagtcaaaccattcccttcctctgcatggaatcctatgattaa >gi568815596f:178012547_178226173|GENSCAN_predicted_peptide_7|188_aa HLSNILNIQDRREYPPLGDQPDVSNRDLSVCPKKDSPNKRGQAETVILNLHLRTKSQEAD LSTDGPHIWGTSPSGQDEGLNLSSCWRQPRSGQNIQRNSFQDIIRQQKTVIPKREERSEH PRRHDLRAAPGLMQGKHVLTAMQTLSRSEPGKADLALAGGVDGGCREGCRGASSGFQDES SSDLSDSD >gi568815596f:178012547_178226173|GENSCAN_predicted_CDS_7|567_bp catctcagcaacatcctaaacatccaagatcgacgagaatatccccctttaggagatcaa cctgatgtcagcaacagagatttatctgtttgccctaagaaggactcacccaacaagaga ggccaggcagaaactgttatcctgaatttacatctgaggacaaagagtcaagaggctgac ttgtctacagatggaccacatatctgggggacttctccttctggccaagatgaaggactg aatttatcttcctgttggagacaaccaagaagtggacaaaacatacaaagaaatagtttt caagatattatcaggcaacaaaagacagtgatccccaagagagaggaaaggagtgagcat ccccggcgacacgatctgcgggcagctcccggcttgatgcaggggaagcacgtcttgact gcaatgcaaacgctgtcccggtctgaaccagggaaggcagacttggccctggccggggga gtggacggaggctgccgggagggctgcaggggcgccagcagcggcttccaggatgagtcg tcatctgacctgtctgacagcgactag