GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:08:08

Sequence gi568815596r:65213504_65444896 : 231393 bp : 43.26% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  14407  14454   48  0  0   85   74    67 0.079   5.95
 1.02 Intr +  26349  26459  111  2  0   86   85    60 0.778   6.08
 1.03 Intr +  33021  33236  216  2  0   29  105   171 0.926  11.60
 1.04 Intr +  37524  37596   73  2  1  112  100    31 0.968   5.68
 1.05 Intr +  40225  40361  137  2  2   87  115   -31 0.940  -0.21
 1.06 Intr +  42042  42191  150  2  0   67   98   144 0.997  13.66
 1.07 Intr +  47744  47889  146  1  2   76   88   118 0.999   9.68
 1.08 Intr +  51540  51672  133  0  1   79   84    70 0.999   6.35
 1.09 Term +  55061  55231  171  1  0  118   37   209 0.981  16.63
 1.10 PlyA +  56223  56228    6                               1.05

 2.00 Prom +  74086  74125   40                              -2.46
 2.01 Init +  78510  78544   35  2  2   66   64    49 0.093  -0.33
 2.02 Intr +  86745  86895  151  0  1   75   95    53 0.765   4.86
 2.03 Term +  87971  88006   36  1  0   93   50    50 0.490  -0.96
 2.04 PlyA +  89598  89603    6                               1.05

 3.10 PlyA -  91468  91463    6                               1.05
 3.09 Term - 100666  99998  669  1  0   68   41   903 0.563  77.39
 3.08 Intr - 103380 103231  150  0  0  107   99    61 0.936   9.46
 3.07 Intr - 118548 118484   65  1  2  108   98    61 0.974   7.54
 3.06 Intr - 121270 121102  169  1  1  106   67   118 0.841  11.02
 3.05 Intr - 121529 121384  146  0  2   34   12   158 0.779   2.80
 3.04 Intr - 127524 127428   97  0  1  139   89     4 0.949   5.18
 3.03 Intr - 131393 131216  178  1  1  109   55   138 0.195  12.52
 3.02 Intr - 136679 136642   38  2  2   88   81   -27 0.036  -6.34
 3.01 Init - 141532 141443   90  1  0   78   65   136 0.529   8.79
 3.00 Prom - 150319 150280   40                              -3.36

 4.00 Prom + 151804 151843   40                              -4.06
 4.01 Init + 157556 157596   41  1  2   65   61    64 0.324   0.11
 4.02 Intr + 165523 165621   99  1  0  104   37    74 0.417   3.13
 4.03 Term + 166809 166974  166  0  1   83   42    91 0.450   1.39
 4.04 PlyA + 167083 167088    6                               1.05

 5.00 Prom + 173191 173230   40                              -0.36
 5.01 Init + 174721 174852  132  0  0   36   89    61 0.189   1.14
 5.02 Intr + 176571 176659   89  2  2   64   57    46 0.080  -2.13
 5.03 Intr + 200011 200178  168  1  0   77   83   115 0.744   8.96
 5.04 Intr + 200275 200446  172  1  1   32   91    26 0.434  -2.75
 5.05 Intr + 203844 204003  160  2  1  105   41    95 0.484   6.06
 5.06 Term + 214175 214284  110  0  2   89   47    66 0.470   1.27
 5.07 PlyA + 214509 214514    6                               1.05

 6.06 PlyA - 215127 215122    6                               1.05
 6.05 Term - 218682 218534  149  1  2   64   49    63 0.334  -1.94
 6.04 Intr - 221438 221325  114  0  0   54  106    32 0.537   2.02
 6.03 Intr - 223255 223061  195  2  0   59   60   155 0.491   9.19
 6.02 Intr - 225000 224982   19  0  1   80   87    -2 0.442  -4.92
 6.01 Intr - 228691 228426  266  2  2   59   99   148 0.419  10.23

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_1|394_aa
MDSQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDE
ASELRSMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNR
EKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTR
RLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVL
VESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKH
IVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAV
LADIMKDKDNFWMTRQEYQEKGVRVLEKLGVTVR

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_1|1185_bp
atggacagccagggcaggaaggtggtggtgtgcgacaacggcaccgggtttgtgaagtgt
ggatatgcaggctctaactttccagaacacatcttcccagctttggttggaagacctatt
atcagatcaaccaccaaagtgggaaacattgaaatcaaggatcttatggttggtgatgag
gcaagtgaattacgatcaatgttagaagttaactaccctatggaaaatggcatagtacga
aattgggatgacatgaaacacctgtgggactacacatttggaccagagaaacttaatata
gataccagaaattgtaaaatcttactcacagaacctcctatgaacccaaccaaaaacaga
gagaagattgtagaggtaatgtttgaaacttaccagttttccggtgtatatgtagccatc
caggcagttctgactttgtacgctcaaggtttattgactggtgtagtggtagactctgga
gatggtgtgactcacatttgcccagtatatgaaggcttttctctccctcatcttaccagg
agactggatattgctgggagggatataactagatatcttatcaagctacttctgttgcga
ggatacgccttcaaccactctgctgattttgaaacggttcgcatgattaaagaaaaactg
tgttacgtgggatataatattgagcaagagcagaaactggccttagaaaccacagtatta
gttgaatcttatacactcccagatggacgtatcatcaaagttgggggagagagatttgaa
gcaccagaagctttatttcagcctcacttgatcaatgttgaaggagttggtgttgctgaa
ttgctttttaacacaattcaggcagctgacattgataccagatctgaattctacaaacac
attgtgctttctggagggtctactatgtatcctggcctgccatcacggttggaacgagaa
cttaaacagctttacttagaacgagttttgaagggtgatgtggaaaaactttctaaattt
aagatccgcattgaagacccaccccgcagaaagcacatggtattcctgggtggtgcagtt
ctagcggatatcatgaaagacaaagacaacttttggatgacccgacaagagtaccaagaa
aagggtgtccgtgtgctagagaaacttggtgtgactgttcgataa

>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_2|73_aa
MDVLFREKGIVRPWCFKRKLNWPREATTPTVWSLLQAKLQPGGQPDPRGLPALGRSLIVP
AKDGSVTADNVSF

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_2|222_bp
atggatgtcctgttccgtgaaaaggggatcgtgaggccctggtgcttcaagagaaagttg
aattggccccgagaggccaccacacccaccgtgtggtccctcctccaggccaagctgcag
cctggaggtcagcctgaccctcggggactcccagctctgggcagaagcctcatcgtccct
gccaaggatggttctgtgacagccgacaatgtcagcttttag

>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_3|533_aa
MPVLPVPPGLTSALCWAFLLLGQVHYSPQEMLFNSFQKEGEGSDSYIVRVKAVVMTRDDS
SGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLRYDNSSFGLSSFSNAMLV
PTGDHAPTWELCKCARRKRNNRDEESVVKGYNQDSGEQRRSDGQQPSKASFPIGETHRYV
KAGVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEG
STTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHD
SYPTDHYHLDQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYPDPSE
DADSSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGSVIKTQPSRGKSRRRKEDGE
RSRCVYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPC
SCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAA

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_3|1602_bp
atgcctgtcctgccagtccccccaggcctgacctcagccctctgctgggctttccttctc
ctgggccaggtgcattactcacctcaagagatgttgtttaattctttccagaaagagggg
gagggaagtgacagctatattgtgcgtgtcaaggctgtggttatgaccagagatgactcc
agcgggggatggttcccacaggaaggaggcgggatcagtcgcgtcggggtctgtaaggtc
atgcaccccgaaggcaatggacgaagcggctttctcatccatggtgaacgacagaaagac
aaactgagatatgataactcttcctttggcctctcaagcttctctaatgcaatgctagtg
cccactggagaccatgcgcccacatgggagctctgcaaatgtgccaggaggaagaggaat
aaccgtgatgaagagagtgtagtgaaggggtacaaccaggacagtggggagcagcgaaga
tcggatggtcagcagccaagcaaagcctcctttcccattggagagactcacagatatgtg
aaggcaggggtggtattggaatgctatgtaagaaaggacttggtctacaccaaagccaat
ccaacgtttcatcactggaaggtcgataataggaagtttggacttactttccaaagccct
gctgatgcccgagcctttgacaggggagtaaggaaagcaatcgaagaccttatagaaggt
tcaacaacgtcatcttccaccatccataatgaagctgagcttggcgatgatgacgttttt
acaacagctacagacagttcttctaattcctctcagaagagagagcaacctactcggaca
atctcctctcccacatcctgtgagcaccggaggatttataccctgggccacctccacgac
tcataccccacagaccactatcacctcgatcagccgatgccaaggccctaccgccaggtg
agcttcccggacgacgacgaggagatcgtgcgcatcaacccccgggagaagatctggatg
acggggtacgaggattaccggcacgcacccgtcaggggcaagtacccggacccctcggag
gacgcggactcctcctacgtgcgcttcgccaagggcgaggtccccaagcatgactacaac
tacccctacgtggactcctcagactttggcctaggcgaggaccccaaaggccgcgggggc
agcgtgatcaagacgcagccctcccggggcaagtcgcggcggcggaaggaggacggagag
cgctcgcggtgcgtgtactgcagggacatgttcaaccacgaggagaaccgccggggccac
tgccaggacgcgcccgactccgtgagaacttgcatccgccgggtgagctgcatgtggtgc
gcggacagcatgctctatcactgtatgtcggaccccgagggagactatacagacccttgc
tcgtgcgatactagcgacgagaagttttgcctccggtggatggctcttattgccttgtct
ttcctggccccctgtatgtgctgttacctgccccttcgggcctgctaccactgcggagtg
atgtgcaggtgctgtggcgggaagcacaaagcggccgcgtga

>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_4|101_aa
MRATATLSLPVRAQASKSGVQAEHPYITGAIKDDTRAIVKTRDLANRLNLIDLSQGCVLI
PKPLSLKLLPQETLLAFQRRCQKSKAVWNLSYGTAFEASQS

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_4|306_bp
atgagggctacagccaccctgtcgctgcccgtaagagctcaggcctccaagtctggggtc
caggctgagcatccctacattaccggtgcaatcaaagatgacacgagagctatagtaaaa
actagggacttggcaaacagactcaaccttatagatcttagtcaaggctgcgtactcatc
cccaaacccctgtcattaaagcttttgccccaggagactctactggcgttccagagacgc
tgtcagaagtcaaaagctgtctggaacctttcttatggaactgccttcgaggctagtcaa
tcatga

>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_5|276_aa
MGKRKFNLSESSAYETLNMSPQGRDRVSPIRGRAKDIISAQQMTRPEPSRKLVTPPEMFD
GLGRGAKITFLRGRAVKTTENWLSLLQRAVVPQKNLLTIRAAYPSHRASGTQAFHIKHTS
KHKLQGQPVCPNSKAYQSGSSRHLFFLLNIQTAKCGDLSIPKARKRQIYKQFMNEYKFST
IKNEYLLDSELKALPCLHSQCSCTWNTDMRKPKLKTPTYHVQESYTRRASGKLIYLHLMQ
AFSGKISEVRKMMAMTDCHQFRRIMNKHDWQKGCEL

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_5|831_bp
atggggaaaagaaagttcaacctgagtgaatccagtgcttatgaaactctgaatatgagc
cctcaaggtagagatcgcgtgtctcctattaggggccgggccaaagacattatcagtgcc
caacaaatgacgagaccagaaccctcacggaagcttgtgacacctccagaaatgtttgat
ggtctgggcagaggagccaaaatcacctttctgagaggaagggcggtcaaaacaacagag
aattggttatcgctgctgcagagggcagtggttccacagaagaacttgctgacgattaga
gctgcatacccaagtcaccgtgcaagtgggacccaggcattccacatcaagcacacatct
aagcataagctgcagggccagccagtgtgccctaactccaaagcttatcagagtggttca
tcaagacatttgttttttctactgaacatacagactgccaaatgtggtgacttaagtatt
cccaaggccagaaagcgtcaaatctataaacagtttatgaatgagtataaattttcaaca
atcaagaatgagtacttgttggatagtgagctgaaggcccttccctgcctccactcccag
tgctcctgtacctggaacacagacatgcggaaaccaaagcttaagacccctacctaccat
gttcaggagagctacacaagaagagcatctgggaagctcatctacctccacctcatgcag
gcattttctgggaagataagtgaagtgagaaaaatgatggcaatgacagattgtcaccag
ttcagaagaataatgaacaagcatgattggcagaaaggctgcgagctctga

>gi568815596r:65213504_65444896|GENSCAN_predicted_peptide_6|247_aa
XICIACNLVDGPQGNHCSKLKVSISDPSTTIISKITVTISTTITFTTITTIILILPITIS
TAISQHHHHHHHHHHHHEHHLCRHQKSTQVEYSVFAERENDLGLNGTGDEALHDNGTTER
VSGPPAGYLYRADYAIGLQPFMPRLGRRTPGAGGPHSRAPELAYLQKLITSPATLPFVYL
ETGGWSPRDAHRVDNFDMACLCTPSPKPYPAPCFPFCCGALFISSRPPSPNQAISGDVKK
GGERTGR

>gi568815596r:65213504_65444896|GENSCAN_predicted_CDS_6|744_bp
nctatctgtatagcctgcaatctggtagatggaccacagggaaaccactgcagcaaacta
aaagtgtctatctcagatccttccaccaccatcatttccaaaatcaccgtcactatctcc
accaccatcacctttaccaccatcaccactatcatcctcatccttcccatcaccatctcc
actgctatctctcaacaccatcatcatcaccaccaccaccatcatcaccatgagcaccac
ctctgtcgtcatcaaaaaagcacacaggtagaatacagtgtctttgctgaaagggaaaac
gacctgggattgaacggcaccggggatgaagcattgcacgataacggcacaaccgagcgc
gtcagcggcccgcccgccggctatttataccgcgcggattatgcaatcgggctccagcca
ttcatgccccgactgggccgccgcacgcccggggcgggggggcctcattcccgggcgccg
gagctggcctacctgcagaaattaatcacctcacctgccaccttgccatttgtgtacctt
gaaactggagggtggagcccaagagatgcccacagggtggataattttgacatggcctgc
ctttgcaccccttcccccaaaccctatcccgcgccctgcttccccttctgctgcggcgcc
ctcttcatctctagccgccccccctccccaaatcaggcgatctccggagatgtgaagaag
gggggcgagcggacaggaagatga