GENSCAN 1.0	Date run:  6-Nov-116	Time: 04:43:14

Sequence gi568815596r:39079169_39329532 : 250364 bp : 39.59% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -   1184    956  229  2  1   42  101   129 0.016   6.12
 1.02 Intr -   3266   3209   58  1  1   41   95    49 0.002  -1.13
 1.01 Init -  12704  12454  251  2  2   64   48   175 0.015   8.08
 1.00 Prom -  21431  21392   40                              -6.35

 2.09 PlyA -  22391  22386    6                               1.05
 2.08 Term -  28487  28404   84  2  0  102   48    81 0.896   2.17
 2.07 Intr -  33539  33384  156  2  0   64   78    51 0.580   0.99
 2.06 Intr -  38323  38170  154  0  1   83   94   -18 0.053  -2.55
 2.05 Intr -  40896  40749  148  1  1   63   69   125 0.244   6.47
 2.04 Intr -  41043  40923  121  0  1   42   53    93 0.886   0.35
 2.03 Intr -  41272  41168  105  1  0   93  100   139 0.572  15.09
 2.02 Intr -  41951  41446  506  0  2   79   63   216 0.494   9.97
 2.01 Init -  45561  45138  424  0  1   78   40   141 0.333   4.85
 2.00 Prom -  48852  48813   40                              -5.85

 3.03 PlyA -  49647  49642    6                               1.05
 3.02 Term -  52572  52533   40  2  1  102   55    91 0.547   2.88
 3.01 Init -  54472  54378   95  1  2  103   82    52 0.578   6.00
 3.00 Prom -  60943  60904   40                              -4.55

 4.15 PlyA -  60990  60985    6                               1.05
 4.14 Term -  71348  71279   70  1  1   96   41    97 0.646   2.23
 4.13 Intr -  71980  71803  178  2  1   76   54    62 0.531  -0.34
 4.12 Intr -  82482  82459   24  1  0  110   83    24 0.024   1.18
 4.11 Intr -  92696  92660   37  2  1   49  101    35 0.036  -2.18
 4.10 Intr -  99591  99427  165  0  0  105   62    24 0.216   0.74
 4.09 Intr - 100153 100019  135  1  0   97   80   118 0.959  11.74
 4.08 Intr - 105479 105423   57  2  0  103   75    70 0.823   5.36
 4.07 Intr - 108541 108459   83  2  2   93  103   -10 0.776  -0.56
 4.06 Intr - 111334 111137  198  2  0   81   52   184 0.766  12.50
 4.05 Intr - 112780 112612  169  1  1   55   51    49 0.240  -3.50
 4.04 Intr - 117288 117114  175  2  1  116   54    60 0.228   4.42
 4.03 Intr - 117892 117784  109  2  1  102  105     3 0.324   1.82
 4.02 Intr - 125476 125359  118  1  1   44   80    23 0.147  -3.78
 4.01 Init - 126832 126770   63  1  0   64   93    87 0.304   8.00
 4.00 Prom - 127739 127700   40                              -5.75

 5.04 PlyA - 128566 128561    6                               1.05
 5.03 Term - 139870 139405  466  0  1    5   37   237 0.493   3.80
 5.02 Intr - 146792 146671  122  2  2   89  106    24 0.890   2.67
 5.01 Init - 150364 150197  168  1  0   59  115    75 0.964   6.88
 5.00 Prom - 158124 158085   40                              -6.55

 6.00 Prom + 158649 158688   40                              -5.75
 6.01 Init + 160502 160572   71  1  2   40   81    46 0.439  -0.33
 6.02 Term + 164551 165013  463  1  1  124   55   533 0.705  47.14
 6.03 PlyA + 165910 165915    6                               1.05

 7.14 PlyA - 166863 166858    6                               1.05
 7.13 Term - 177900 177650  251  1  2   73   45   163 0.989   5.38
 7.12 Intr - 179272 179180   93  2  0  105   97    36 0.972   5.22
 7.11 Intr - 181609 181438  172  1  1  105   72    90 0.886   7.69
 7.10 Intr - 186138 186035  104  1  2   51  121    42 0.618   2.77
 7.09 Intr - 193232 193115  118  2  1  102  116   -34 0.187  -0.08
 7.08 Intr - 199318 199239   80  2  2   51   91    95 0.365   4.45
 7.07 Intr - 209088 208953  136  0  1   75   63    56 0.397   1.02
 7.06 Intr - 211166 211124   43  1  1   93   69    36 0.668  -0.48
 7.05 Intr - 213658 213605   54  0  0   66   98   102 0.282   6.18
 7.04 Intr - 220633 220575   59  1  2   50  108    41 0.027  -0.94
 7.03 Intr - 230351 230293   59  0  2   80   89    39 0.091   0.88
 7.02 Intr - 236220 236142   79  0  1   95   95    46 0.266   4.21
 7.01 Intr - 246460 246350  111  1  0   28   75   128 0.672   5.16

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  12704  12450  255  2  0   64   55   182 0.889   7.36
S.002 Init -  34591  34529   63  1  0   37  121    62 0.851   5.60


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_1|180_aa
MVTWKLNEEGVARKWKWSTVILPRGQMRCGQGFSPGRIIEWHPLVTMTALGGEAWGAGIE
KVTVEILLRNLPLKGKECGEHWGINVEEKEKMQYHKANNRASDPLTIIRITAKTPPLFRS
VEASDSQEPVVNCACEASRLRTPYENLMPDDLSLSPIPPHMGPSSCRKTSTGLPLIVHYX

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_1|540_bp
atggtgacttggaagttaaatgaagaaggagtggcaagaaagtggaagtggtcaactgtc
atactgccaagaggtcagatgagatgcgggcagggatttagtcctggccgtattatagaa
tggcatcccctggtgaccatgacagccctgggtggagaagcctggggggctggtatagaa
aaggtgactgtggagatccttttgaggaatctgcctctgaaaggcaaagaatgtggtgaa
cactgggggataaatgtagaggaaaaggaaaagatgcagtaccacaaagctaacaataga
gcaagtgatccactcaccatcattcgcattaccgccaaaactccgcctcttttcagatca
gtggaggcatcagattctcaggagcctgttgtgaactgtgcatgtgaggcatctaggttg
cgtactccttatgagaatctaatgcctgatgatctgtcactgtctcccattcccccccat
atgggaccatctagttgcagaaaaacaagcacagggctcccattgattgtacattatgnn

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_2|565_aa
MDTRLRTLEFILGRQCEFLNRKVSSWVRSSRQKDHCGCSKAENQVAASWPAGQAKARSVA
LAPAGGTLKGQTPTPAPVLAALLRCAALGTRLARLDAPLSVFAYSARTRLVRHVRRGVRL
LRAEEGSEKKPLRLRQGAPVGAFLLLHREPENPERTSPARQRMLSSEQVQFASRKLQRYT
GGGGGGGGRGGTSGQPDSPTTTSGPSPSPRDLRPSSAPPGALAFRSPNYAERAPRPERPS
TRPPPAASSAAGPDRARECSPGGRAAAAAEGSPGRRRRAGEGRGAWPRGGGAGCRRLRAA
SVLHGWYLCRRRPGGTMQAQQLPYEFFSEENAPKWRGLLVPALKKDGAHGEAPLIRLALG
VDIHRVCGNAAGSRGEFIRIIQPLRGQQQLEEPQFSAEVKAGHFSVFLVLARSCCQPTVL
GVQYAGFSGLRMPWPQSGLLLFLNMAGMSHCICFTASMSLSPILSIAQIYHAYYRPGIAL
DTQAKKSEEKESSKDFRRNNEVWELLLWSVEEPTSALERNCKPGAVAHACNSSTWEPECD
ASRGAFVIVLVQDLLEADAKMGLST

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_2|1698_bp
atggataccaggttaaggactttggaatttatcctgggacgccagtgtgagttcttgaac
agaaaagtaagtagctgggtccgaagttcgcgtcagaaggatcactgtggctgcagcaag
gcagagaaccaggtggccgcgtcctggccagcagggcaggcaaaggcgcggagcgttgca
cttgcacctgcagggggcacactgaagggccaaacgcccacccccgcccccgtcctcgcc
gccctactccgatgcgccgcgctcggaactcggctagcccgcctggacgcgcccctctcg
gtcttcgcctattccgcccggacgcgcctcgtgcgtcacgtccgccgtggcgtgaggctc
cttagagctgaggagggaagcgaaaagaagcctctgcgcctgcgccagggcgcacccgtc
ggcgctttcctcctccttcaccgggagccggaaaacccggagcgaaccagcccagcacgg
cagcgcatgctcagtagcgagcaggttcagttcgctagtaggaagctccagcgctacacc
ggcggcggcggtggcggcggcggccgcggcggcacctcagggcagccagattccccaaca
acgacctccggtccttccccttccccgcgagacctccgccccagctccgccccgcccggg
gctcttgcgtttcggagtcccaactacgcggagcgggcgccgcggccggagcgtccctcc
acacgtcctcccccagccgccagctccgccgcggggccagaccgggcccgggagtgcagc
cccggcgggcgggcggcggccgcggcagagggcagcccggggcggcgccggcgggccggg
gaggggcggggggcctggccccggggcggtggtgcgggatgccgccgcctccgggccgcg
tccgttctccacggctggtacctgtgtcggaggcgccccgggggcaccatgcaggcgcag
cagctgccctacgagtttttcagcgaagagaacgcgcccaagtggcggggactactggtg
cctgcgctgaaaaaggacggcgcacacggagaggcccccctcatacggctggctctcggt
gttgacatccaccgggtgtgtgggaatgccgcagggagccggggggagtttatccggata
atccaacccctgagaggacaacaacagttggaggagcctcagttttcagcggaggtcaaa
gcaggccacttttccgtcttcttggtcttagcccggagctgctgtcagcctaccgtttta
ggtgtccagtacgctggttttagtggcttgagaatgccctggccccagtccggactgcta
cttttcctgaatatggctggaatgtcccactgtatctgtttcaccgcatctatgagtcta
agtcctatcttatctattgcacaaatatatcatgcctactatagaccaggtattgccctt
gacactcaggctaaaaagagtgaagaaaaggaaagtagtaaggactttagaaggaataat
gaagtctgggaattgctgctgtggagtgtagaggagccaaccagtgccttagaaaggaat
tgcaagccaggtgcggtggctcatgcctgcaattccagcacttgggagcctgagtgtgat
gcttcaaggggagcctttgtcattgtattagtccaggacctcttagaagcagatgccaag
atgggattaagcacataa

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_3|44_aa
MRELQVDDFDLLNKVKVKVRNKRQVEIDGEKRPSVNMTVTAHIG

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_3|135_bp
atgagggagctccaggttgatgattttgatttactcaataaagtaaaagtcaaggtcagg
aacaaaaggcaggtggaaatagatggggaaaaaaggccctcggtgaacatgacggtgact
gcccacattggatga

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_4|526_aa
MDSDSIVGRLRSVADRSRLAPKNNQIMILQCIHRDIKPENILITKQGIIKICDFGFAQIL
SWTSSFSGASLIGLIVDLLNSFSANSEIFLLAWIHCWDGASSEPNCIDCYFSSGSSHPEK
LPGSGLVLGSVCKESRDVIHCQIFQLWIPAPALVECLWGYLTTLLRRIAHYLISASRAAF
QLFLLCNAFVQLLIVQGPVMILGLASTHLEAVPGDAYTDYVATRWYRAPELLVGDTQYGS
SVDIWAIGCVFAELLTGQPLWPGKSDVDQLYLIIRTLGKLIPRHQSIFKSNGFFHGISIP
EPEDMETLEEKFSDVHPVALNFMKGCLKMNPDDRLTCSQLLESSYFDSFQEAQIKRKARN
EGRNRRRQQQAPKSAFPRLFLKTKICQVQRNETQTSGNQILPNGPILQNSMVTVMTNINS
AVYQFLPDAVQILRHHGLLQIELRGQRLCLAAAALLQAALRIDFECLLIQGPRPKEQLIW
EICPSHGRGHRKLEIPLKCSVQECSWNLGIDILELEQEVGDLTEED

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_4|1581_bp
atggattctgacagcatcgtgggccgtctcaggagtgttgctgatcgttccaggttagct
ccgaaaaataatcaaataatgatcttacagtgtattcacagagatataaaacctgaaaat
attctaataactaagcaaggaataatcaagatttgtgacttcgggtttgcacaaattctg
agttggacttcatctttctctggtgcctccttgattggcttaatagttgaccttctgaat
tctttttctgccaattcagagatttttctcctggcttggatccattgctgggatggggct
tcctcagagccaaactgcattgattgttatttctcttctggatctagccacccagagaag
ctaccaggctctgggctggtactaggaagtgtctgcaaagagtcccgtgatgtgatccat
tgtcagatctttcagctatggataccagcacctgctctggtagagtgtctttggggctac
ctgacgactttactaaggagaattgcccattacctcatctctgcaagtcgggctgctttc
caattgttcctcctctgtaatgcatttgtacagctcctgatcgttcagggtcctgtgatg
attctgggattggcttccacccacttggaggcagttccaggagatgcctacaccgattat
gtagctacgagatggtaccgagctcctgaacttcttgtgggagatactcagtatggttct
tcagtcgatatatgggctattggttgtgtttttgcagagctcctgacaggccagccactg
tggcctggaaaatcagatgtggaccaactttatctgataatcagaacactaggaaaatta
atcccaagacatcaatcaatctttaaaagtaacgggtttttccatggcatcagtatacct
gagccagaagacatggaaactcttgaggaaaagttctcagatgttcatcctgtggctctg
aacttcatgaaggggtgtctgaagatgaatccagatgacagattaacctgttcccaactc
ctggagagctcctactttgattcttttcaagaggcccaaattaaaagaaaagcacgtaat
gaaggaagaaacagaagacgccaacagcaggcacctaagtctgcctttcctaggcttttt
ctcaaaaccaagatctgccaggtacaaaggaatgaaacccagacatctgggaaccaaatt
ctacccaatgggccaatattgcagaacagtatggtgactgttatgacaaacattaattct
gcagtttatcagttccttcctgatgctgtccaaatactgcgccatcatggtctgttgcag
attgaattgagaggtcagaggctgtgtttggctgctgcagctctgctccaggctgcattg
agaatcgatttcgagtgtcttctcattcagggacccaggccaaaggagcagctcatatgg
gaaatatgcccttctcatggcagagggcacaggaaacttgaaatacccttaaaatgttct
gttcaggagtgttcttggaatttggggattgatattctggaacttgagcaggaagtgggt
gacctgacagaagaagattaa

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_5|251_aa
MEKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQLKH
PNLVNLIEVFRRKRKMHLVFEYCDHTLLNELERNPNGPTIKKSYESLKKNKAQCGVRECP
GGVLVKVLQRNKTSGIHRGTDNRKFIIGIDSCDYGGREVPQSAICKLENQESRWSNSGQV
LRPQRTESFKVQRPESQELPHPRAGEDGRPSSRREKQPFPYRFVVSRPSTGLMMPACLPS
PLWVGLLYAVY

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_5|756_bp
atggaaaagtatgaaaaattagctaagactggagaagggtcttatggggttgtattcaaa
tgcagaaacaaaacctctggacaagtagtagctgttaaaaaatttgtggaatctgaagat
gatcctgttgttaagaaaatagcactaagagaaatacgtatgttgaagcaattaaaacat
ccaaatcttgtgaacctcatcgaggtgttcaggagaaaaaggaaaatgcatttagttttt
gaatactgtgatcatacacttttaaatgagctggaaagaaacccaaatggtccaacaata
aagaagagttatgagtctttgaagaaaaataaagcacagtgtggagttagagaatgccca
ggaggtgtattagtcaaggttcttcagagaaacaaaaccagtgggatacatagaggtact
gataacaggaaatttattattggtattgactcatgtgattatggagggagagaagttcca
caatctgccatctgcaagctagagaaccaggaaagccgatggtctaattcaggccaagtc
ctaaggccccagaggacagagagtttcaaagtccaaaggcctgagagccaggagcttcca
catccaagggcaggagaagatggacgtcccagctcaaggagagagaagcagcccttcccc
taccgttttgttgtatccaggccttcaacgggtttgatgatgcctgcctgcctgccctca
cctttgtgggtgggtcttctttacgcggtctactga

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_6|177_aa
MTKIQRLTISSVDKMETGTHTNHWGHRSGRRSRFSFGELFLVPATGIRSLDLAAHPINPA
RCPQFPRHRQNPHLLHPQGDGDEASSSAEQPQPQLPRVSLGGGAVYPATSEPAEPPQRLP
GNRNARARGALRLPERVPLALAAPALILLRGDSVLAVLTALARSRRLLCLGSHFGGT

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_6|534_bp
atgactaaaatccaaagactgacaatatcaagtgttgataagatggaaactggaactcac
acaaatcactggggccaccgaagcggaaggcggtcccgcttttctttcggggaacttttc
ttggttcctgcaactgggatccgcagtctagacctcgcggctcaccccatcaaccccgca
cgctgcccgcagttcccccgccaccggcagaatccgcacttactgcacccacagggcgac
ggtgacgaagcttcgagcagcgccgaacagccccagccccagctcccgcgcgtgtcgctc
ggaggaggcgccgtgtacccagcgacttcggagccagcggaaccgccgcagcgtctcccg
ggcaaccggaacgctagggcgcgcggggcactgcggcttccggagcgggttcccctggcg
ctggcagccccagccctgatccttctgagaggtgacagcgtgctggcagtcctcacagcc
ctcgctcggtctcgacgcctcctatgcctgggctcccactttggcggcacttga

>gi568815596r:39079169_39329532|GENSCAN_predicted_peptide_7|452_aa
HPFVTQHLTRSLAIELLDKVNNPDHSTYHDFDDDDPEPLVAVPHRIHSTSRNVREEKTRS
EITFGQVKFDPPLRKETEPHHELDLQLEYGQGHQGGYFLGANKGHVAHLEDDEGDDDESK
HSTLKAKIPPPLPPKEMHSTEDENQGTIKRCPMSGSPAKPSQVPPRPPPPRLPPHKPVAL
DQYLIFGAEEGIYTLNLNELHETSMEQVKLLSFIPIIYQGFLIMQDKCKSYLLLFQHTNS
LTEYCQVRNPYTGHKYLCGALQTSIVLLEWVEPMQKFMLIKHIDFPIPCPLRMFEMLVVP
EQEYPLVCVGVSRGRDFNQVVRFETVNPNSTSSWFTESGCIKIVNLQGRLKSSRKLSSEL
TFDFQIESIECHSSNKQMIIISQFRGISDQDVKMESAFKDIARVKKQDQQQNLKAVYRSE
ANRPAGLQLQKYPTGDGEPQPSSLLVVPDNQA

>gi568815596r:39079169_39329532|GENSCAN_predicted_CDS_7|1359_bp
catccttttgtaacacaacatttgacacggtctttggcaatcgagctgttggataaagta
aataatccagatcattccacttaccatgatttcgatgatgatgatcctgagcctcttgtt
gctgtaccacatagaattcactcaacaagtagaaacgtgagagaagaaaaaacacgctca
gagataacctttggccaagtgaaatttgatccacccttaagaaaggagacagaaccacat
catgaacttgatctgcaactggaatatggacaaggacaccaaggtggttactttttaggt
gcaaacaaaggacacgtcgcacatttagaagatgatgaaggagatgatgatgaatctaaa
cactcaactctgaaagcaaaaattccacctcctttgccaccaaaggaaatgcattctact
gaggatgaaaatcaaggaacaatcaagagatgtcccatgtcagggagcccagcaaagcca
tcccaagttccacctagaccaccacctcccagattacccccacacaaacctgttgcctta
gatcagtacttgatatttggtgccgaagaagggatttataccctcaatcttaatgaactt
catgaaacatcaatggaacaggtaaagcttctcagctttattcccataatttaccagggc
tttttgattatgcaagacaaatgcaaaagttacctgttgctattccagcacacaaactcc
ctgacagaatactgccaagtaagaaatccttacacgggccataaatacctatgtggagca
cttcagactagcattgttctattagaatgggttgaaccaatgcagaaatttatgttaatt
aagcacatagattttcctataccatgtccacttagaatgtttgaaatgctggtagttcct
gaacaggagtaccctttagtttgtgttggtgtcagtagaggtagagacttcaaccaagtg
gttcgatttgagacggtcaatccaaattctacctcttcatggtttacagaatcaggttgt
ataaaaatagtaaatctccaaggaagattaaaatctagcaggaaattgtcatcagaactc
acctttgatttccagattgaatcaatagaatgtcattcatccaacaaacaaatgattata
ataagtcagtttcgagggatatctgatcaagatgttaaaatggaatccgctttcaaagac
atagccagggtcaaaaagcaagatcaacaacagaatctcaaagcagtatacaggtctgaa
gctaacaggcctgctgggctccagttacaaaagtatcccacaggagatggagaaccacag
ccaagttcattgcttgtggtacctgataatcaggcatga