GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:40:08

Sequence gi568815579r:47701778_47902983 : 201206 bp : 50.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +     30    638  609  2  0   62   41  1039 0.999  92.80
 1.02 PlyA +   1469   1474    6                              -1.75

 2.00 Prom +   2682   2721   40                              -4.16
 2.01 Init +   5403   5571  169  2  1   81   78   143 0.985  12.31
 2.02 Intr +  11647  11761  115  2  1   49  109    82 0.895   5.91
 2.03 Intr +  14781  15239  459  0  0  122   69  1017 0.920  95.50
 2.04 Intr +  16732  16829   98  1  2  150  101   130 0.997  20.15
 2.05 Intr +  24035  24447  413  0  2  104   72  1140 0.669 107.91
 2.06 Intr +  34592  34756  165  1  0   50   75   295 0.996  24.56
 2.07 Term +  39104  39655  552  1  0   85   52  1283 0.975 118.71
 2.08 PlyA +  41335  41340    6                               1.05

 3.00 Prom +  43290  43329   40                              -8.16
 3.01 Init +  43783  44006  224  0  2  101   87   204 0.971  19.63
 3.02 Intr +  45190  45254   65  1  2  100  100   107 0.963  11.46
 3.03 Intr +  48401  48509  109  0  1  116   70    86 0.997   8.94
 3.04 Intr +  49131  49330  200  0  2   73   79   272 0.982  23.79
 3.05 Intr +  49743  49813   71  1  2  102  100    72 0.974   8.70
 3.06 Intr +  50735  50830   96  1  0   99   86    60 0.956   7.11
 3.07 Intr +  52750  52854  105  0  0   89   99   178 0.999  19.41
 3.08 Intr +  52932  53114  183  2  0  125   93   178 0.995  21.98
 3.09 Intr +  53571  53746  176  2  2  123   52   186 0.999  17.24
 3.10 Intr +  53979  54045   67  0  1  115   42   134 0.838  10.41
 3.11 Intr +  54751  54827   77  0  2  114   80   100 0.999  10.11
 3.12 Intr +  54911  54967   57  2  0   98   81   143 0.582  12.60
 3.13 Intr +  76988  77168  181  2  1   43   31    93 0.053  -1.03
 3.14 Intr +  79087  79140   54  0  0   93   78   106 0.992   9.28
 3.15 Intr +  79331  79405   75  1  0   96   95    32 0.938   4.41
 3.16 Term +  79513  79593   81  0  0  137   38   187 0.999  16.29
 3.17 PlyA +  82883  82888    6                               1.05

 4.02 PlyA -  84285  84280    6                               1.05
 4.01 Sngl -  93125  92778  348  2  0   68   37   373 0.999  26.24
 4.00 Prom -  94119  94080   40                              -4.26

 5.04 PlyA -  94162  94157    6                               1.05
 5.03 Term -  96413  96255  159  2  0  102   43   117 0.446   6.54
 5.02 Intr - 101896 101727  170  2  2  126   41   251 0.629  23.87
 5.01 Init - 117327 117195  133  0  1   78   66   122 0.753   9.30
 5.00 Prom - 128243 128204   40                              -6.26

 6.00 Prom + 128310 128349   40                              -8.56
 6.01 Init + 131994 132024   31  2  1   49   61    50 0.456  -1.69
 6.02 Intr + 132632 132766  135  0  0  111   89   106 0.890  13.54
 6.03 Intr + 134466 134617  152  1  2   84   75   225 0.982  20.68
 6.04 Term + 137543 138190  648  1  0  127   44   372 0.999  30.78
 6.05 PlyA + 139350 139355    6                               1.05

 7.00 Prom + 144955 144994   40                              -6.96
 7.01 Init + 148063 148114   52  0  1   92   46    32 0.275   0.75
 7.02 Intr + 158336 158505  170  0  2  126   41   251 0.999  23.87
 7.03 Term + 159556 159735  180  0  0   43   50   200 0.611   9.31
 7.04 PlyA + 160604 160609    6                               1.05

 8.06 PlyA - 160792 160787    6                               1.05
 8.05 Term - 169790 169678  113  0  2  133   39   136 0.998  11.92
 8.04 Intr - 173057 172880  178  2  1  113   93   120 0.999  14.49
 8.03 Intr - 177353 177259   95  0  2   68   89   115 0.945   9.28
 8.02 Intr - 190047 189893  155  2  2   34   97    30 0.052  -1.78
 8.01 Intr - 194373 194257  117  2  0   98   84    57 0.332   5.88

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_1|202_aa
MNGTVDHPPPAAPERKPLGTAPHCPRLPLRKTYRENVGGPGAPEGTPAGRARGGSPAPLP
AKVDEATSGLIRELAAVEDELYQRMLKGPPPEPAASAAQGTGDPDWEAPGLPPAKRRKSE
SPDVDQASFSSDSPQDDTLTEHLQSAIDSILNLQQAPGRTPAPSYPHAASAGTPASPPPL
HRPEAYPPSSHNGGLGARTLTR

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_1|609_bp
atgaacggcacggtggaccacccgccgcctgccgcccccgagcgcaagcccctgggcacc
gccccgcactgcccgcgcctgccactgcgcaagacctaccgcgagaacgtggggggccct
ggcgcgccggaggggacgcccgcaggcagggcacggggaggcagcccggcgccgctgccc
gccaaagtggacgaggccaccagcgggctcatccgcgagctggcggccgtggaggacgag
ctgtaccagcgtatgctgaagggccccccgccagagcccgcagccagcgccgcccaaggc
accggggaccccgactgggaggcgcccgggctgccccctgccaagcggcgcaagtccgag
tcgcccgacgtggaccaggccagcttctccagcgacagcccgcaggatgacacgctcacc
gagcacctgcagagcgccatcgacagcatcctgaacctgcagcaggcccccggccggacg
cccgcgccctcgtacccccacgctgcctcggccggcacccccgcatccccgccgcccctg
cacaggcccgaggcctacccaccctccagtcacaacggtggcctcggcgccaggacgttg
accagataa

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_2|656_aa
MQEKREEATGELSGKSIQGRGNRQCKGPVAGACLECRGTAKKPMRLQPISDGERSGDGSG
RDREHRPLRGRFGSSRDPTLSQPAQPAAAASAPRRQLSICTSLREPRERCAATMFSWLKR
GGARGQQPEAIRTVTSALKELYRTKLLPLEEHYRFGAFHSPALEDADFDGKPMVLVAGQY
STGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGDTEGTVPGNALVVDPDKPFRKLNP
FGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIIL
LFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALMWALGKVVGTP
EVLRVYIGSFWSQPLLVPDNRRLFELEEQDLFRDIQGLPRHAALRKLNDLVKRARLVRVH
AYIISYLKKEMPSVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHD
FTKFHSLKPKLLEALDEMLTHDIAKLMPLLRQEELESTEVGVQGGAFEGTHMGPFVERGP
DEAMEDGEEGSDDEAEWVVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVGTKLPNSVLG
RIWKLSDVDRDGMLDDEEFALASHLIEAKLEGHGLPANLPRRLVPPSKRRHKGSAE

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_2|1971_bp
atgcaggaaaagagggaggaagccacaggagagctctcagggaagagcatccaaggcaga
gggaaccgccagtgcaaaggccctgtggcaggagcctgcctggagtgtcgaggaacagcg
aaaaagccaatgcggctgcagcccataagtgatggggagaggtctggagacggctccgga
cgggaccgcgagcacaggccgctccgcgggcgcttcggatcctcgcgggaccccaccctc
tcccagcctgcccagcccgctgcagccgccagcgcgccccgtcggcagctctccatctgc
acgtctctccgtgaaccccgtgagcggtgtgcagccaccatgttcagctggctgaagcgg
ggcggggcacggggccagcagcccgaggccatccgcacggtgacctcggccctcaaggag
ctgtaccgcacgaagctgctgccgctggaggagcactaccgctttggggccttccactcg
ccggccctggaggacgcagacttcgacggcaagcccatggtgctggtggccggccagtac
agcacgggcaagaccagcttcatccagtacctgctggagcaggaggtgcccggctcccgc
gtggggcctgagcccaccaccgactgctttgtggccgtcatgcacggggacactgagggc
accgtgcccggcaacgccctcgtcgtggacccggacaagcccttccgcaaactcaaccct
ttcggaaacaccttcctcaacaggttcatgtgtgcccagctccctaatcaggtcctggag
agcatcagcatcatcgacaccccgggtatcctgtcgggtgccaagcagagagtgagccgc
ggctacgacttcccggccgtgctgcgctggttcgcggagcgcgtggacctcatcatcctg
ctctttgatgcgcacaagctggagatctcggacgagttctcagaggccatcggcgcgttg
cggggccatgaggacaagatccgcgtggtgctcaacaaggccgacatggtggagacgcag
cagctgatgcgcgtctacggcgcgctcatgtgggcgctgggcaaggtggtgggcacgccc
gaggtgctgcgcgtctacatcggctccttctggtcccagcccctcctcgtgcccgacaac
cggcgcctcttcgagctggaggagcaggacctcttccgcgacatccagggcctgccccgg
cacgcagccttgcgcaagctcaacgacctggtgaagagggcccggctggtgcgagttcac
gcttacatcatcagctacctgaagaaggagatgccctctgtgtttgggaaggagaacaag
aagaagcagctgatcctcaaactgcccgtcatctttgcgaagattcagctggaacatcac
atctcccctggggactttcctgattgccagaaaatgcaggagctgctgatggcgcacgac
ttcaccaagtttcactcgctgaagccgaagctgctagaggcactggacgagatgctgacg
cacgacatcgccaagctcatgcccctgctgcggcaggaggagctggagagcaccgaggtg
ggcgtgcaggggggcgcttttgagggcacccacatgggcccgtttgtggagcggggacct
gacgaggccatggaggacggcgaggagggctcggacgacgaggccgagtgggtggtgacc
aaggacaagtccaaatacgacgagatcttctacaacctggcgcctgccgacggcaagctg
agcggctccaaggccaagacctggatggtggggaccaagctccccaactcagtgctgggg
cgcatctggaagctcagcgatgtggaccgcgacggcatgctggatgatgaggagttcgcg
ctggccagccacctcatcgaggccaagctggaaggccacgggctgcccgccaacctgccc
cgtcgcctggtgccaccctccaagcgacgccacaagggctccgccgagtga

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_3|606_aa
MAAGGSGVGGKRSSKSDADSGFLGLRPTSVDPALRRRRRGPRNKKRGWRRLAQEPLGLEV
DQFLEDVRLQERTSGGLLSEAPNEKLFFVDTGSKEKGLTKKRTKVQKKSLLLKKPLRVDL
ILENTSKVPAPKDVLAHQVPNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRA
KPGPQDTVERPFYDLWASDNPLDRPLVGQDEFFLEQTKKKGVKRPARLHTKPSQAPAVEV
APAGASYNPSFEDHQTLLSAAHEVELQRQKEAEKLERQLALPATEQAATQESTFQELCEG
LLEESDGEGEPGQGEGPEAGDAEVCPTPARLATTEKKTEQQRRREKAVHRLRVQQAALRA
ARLRHQELFRLRGIKAQVALRLAELARRQRRRQARREAEADKPRRLGRLKYQAPDIDVQL
SSELTDSLRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVKLVEKRAFREIHGCG
SPEPWLSPSESFIGKPSGQRPPSPTPAGTRFSEPGSGSPGERTHGSPCMGKGSPCMWYLQ
LKKKLEDEFPGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTESKFLKLVAAIK
AALAQG

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_3|1821_bp
atggcggcaggaggcagtggcgttggtgggaagcgcagctcgaaaagcgatgccgattct
ggtttcctggggctgcggcccacttcggtggacccagcgctgaggcggcggcggcgaggc
ccaagaaataagaagcggggctggcggcggcttgctcaggagccgctggggctggaggtt
gaccagttcctggaagacgtgcggctacaggagcgcacgagcggtggcttgttgtcagag
gccccaaatgaaaaactcttcttcgtggacactggctccaaggaaaaagggctgacaaag
aagagaaccaaagtccagaagaagtcactgcttctcaagaaaccccttcgggttgacctc
atcctcgagaacacatccaaagtccctgcccccaaagacgtcctcgcccaccaggtcccc
aacgccaagaagctcaggcggaaggagcagctatgggagaagctggccaagcagggcgag
ctgccccgggaggtgcgcagggcccaggcccggctcctcaacccttctgcaacaagggcc
aagcccgggccccaggacaccgtagagcggcccttctacgacctctgggcctcagacaac
cccctggacaggccgttggttggccaggatgagtttttcctggagcagaccaagaagaaa
ggagtgaagcggccagcacgcctgcacaccaagccgtcccaggcacccgccgtggaggtg
gcgcctgccggagcttcctacaatccatcctttgaagaccaccagaccctgctctcagcg
gcccacgaggtggagttgcagcggcagaaggaggcggagaagctggagcggcagctggcc
ctgcccgccacggagcaggccgccacccaggagtccacattccaggagctgtgcgagggg
ctgctggaggagtcggatggtgagggggagccaggccagggcgaggggccggaggctggg
gatgccgaggtctgtcccacgcccgcccgcctggccaccacagagaagaagacggagcag
cagcggcggcgggagaaggctgtgcacaggctgcgggtacagcaggccgcgttgcgggcc
gcccggctccggcaccaggagctgttccggctgcgcgggatcaaggcccaggtggccctg
aggctggcggagctggcgcggcggcagaggcggcggcaggcgcggcgggaggctgaggct
gacaagccccgaaggctggggcggctcaagtaccaggcacctgacatcgacgtgcagctg
agctcggagctgacagactcgctcaggaccctgaagcccgagggcaacatccttcgagac
cggttcaagagcttccagaggaggaatatgatcgagcctcgagagagagccaagttcaaa
cgcaagtacaaggtgaagctggtggagaagcgggcgttccgtgagatccacggatgtggc
agccccgagccatggctctcgccgtccgagtcgtttattggtaagcccagcggccagcgg
cccccgtccccgacccccgccgggacccgattctcggagccggggtcagggagccccggg
gagaggacccatgggagcccttgtatgggaaaagggagcccctgtatgtggtatcttcag
ctcaagaagaagttagaagatgagttccccggccgcctggacatctgcggcgagggaact
ccccaggccaccgggttctttgaagtgatggtagccgggaagttgattcactctaagaag
aaaggcgatggctacgtggacacagaaagcaagtttctgaagttggtggccgccatcaaa
gccgccttggctcagggctaa

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_4|115_aa
MLPKAKEAPASPKAQAKPKALKAKKAVLKAVHSHTEEKIRRSPTFRRPKTARLRREPKYP
QKSAPWRNKLGHSAIITFPPTTESAMKKTDDNNTLAFIIDVKAKEHQIKQAVKKL

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_4|348_bp
atgctgccgaaagcgaaggaagctcctgcctctcctaaagcccaagccaaaccgaaggct
ttaaaggccaagaaagcagtgttgaaagccgtccacagccacacagaagagaagatccgc
aggtcacccaccttcaggcggcccaagacagcgcgactccggagggagcccaaatatcct
cagaagagcgccccctggagaaacaagcttggccactctgcgatcatcacgtttccgccg
accactgagtccgccatgaagaagacagacgacaacaacacacttgccttcattatagat
gttaaagccaaggagcaccagatcaaacaggctgtgaagaagctctga

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_5|153_aa
MEYYAAIKKDEFMSYAGTWMKLETIILSKLSQGQKTKHRMLSLIGPPLALDPPRRQRQER
TVYTESQQKVLEFYFQKDQYPNYDQRLNLAEMLSLREQQLQSPVRRHLQNLSRVTEELKG
RWDILVDDVKTLLKPVLAPSHASLLAVRLQLQQ

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_5|462_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctatgcagggacatggatg
aagctggaaaccatcattctgagcaaactatcacaaggacagaaaaccaaacaccgcatg
ctctcgctcataggccctcccctggccctggaccctccaaggagacagcggcaggagcgc
acggtctacactgaaagccagcagaaagtgctagaattttactttcagaaggaccagtac
ccgaactacgaccagcgactgaatctggcggagatgctcagcctcagggagcaacagctg
cagagcccggtgaggcggcatctgcagaatctcagccgggtcacagaagagttgaagggg
agatgggacatattggtggatgatgtcaaaacccttctcaagcccgtgctggcaccttct
catgcctccttactggccgtgagacttcagttacagcagtag

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_6|321_aa
MVKKEGILDEGPLTWASVSPKIMMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRK
QRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQR
QQQKQQQQPPGGQAKARPAKRKAGTSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVA
TVSIWSPASESPLPEAQRAGLVASGPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGL
DPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQSYGAYSPVDSLEFKDPTGTWKF
TYNPMDPLDYKDQSAWKFQIL

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_6|966_bp
atggtcaagaaagaagggatcttggatgagggccccctgacttgggcctcagtgtccccg
aagatcatgatggcgtatatgaacccggggccccactattctgtcaacgccttggcccta
agtggccccagtgtggatctgatgcaccaggctgtgccctacccaagcgcccccaggaag
cagcggcgggagcgcaccaccttcacccggagccaactggaggagctggaggcactgttt
gccaagacccagtacccagacgtctatgcccgtgaggaggtggctctgaagatcaatctg
cctgagtccagggttcaggtttggttcaagaaccggagggctaaatgcaggcagcagcga
cagcagcagaaacagcagcagcagcccccagggggccaggccaaggcccggcctgccaag
aggaaggcgggcacgtccccaagaccctccacagatgtgtgtccagaccctctgggcatc
tcagattcctacagtccccctctgcccggcccctcaggctccccaaccacggcagtggcc
actgtgtccatctggagcccagcctcagagtcccctttgcctgaggcgcagcgggctggg
ctggtggcctcagggccgtctctgacctccgccccctatgccatgacctacgccccggcc
tccgctttctgctcttccccctccgcctatgggtctccgagctcctatttcagcggccta
gacccctacctttctcccatggtgccccagctagggggcccggctcttagccccctctct
ggcccctccgtgggaccttccctggcccagtcccccacctccctatcaggccagagctat
ggcgcctacagccccgtggatagcttggaattcaaggaccccacgggcacctggaaattc
acctacaatcccatggaccctctggactacaaggatcagagtgcctggaagtttcagatc
ttgtag

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_7|133_aa
MGIQLLTCTWGAGKDNDCPPLALDPPRRQRQERTVYTESQQKVLEFYFQKDQYPNYDQRL
NLAEMLSLREQQLQSPYASNLSPDTQLYPDFTKLLPLLDRFEESSLSTTTSQYKEEDGFV
DKNHSVPRSLLDL

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_7|402_bp
atgggaatccagctcctgacatgcacctggggcgctgggaaagacaatgactgccctccc
ctggccctggaccctccaaggagacagcggcaggagcgcacggtctacactgaaagccag
cagaaagtgctagaattttactttcagaaggaccagtacccgaactacgaccagcgactg
aatctggcggagatgctcagcctcagggagcaacagctgcagagcccctatgcctccaac
ttgtcgccagacacccagttataccctgacttcaccaagctgctcccgctcctagaccgg
ttcgaggaatcctcactctccaccacgacgtctcagtacaaagaggaggatggcttcgtg
gacaaaaatcactcagtccccaggtcattactggatttatag

>gi568815579r:47701778_47902983|GENSCAN_predicted_peptide_8|219_aa
XNRNGGNKRNWNRSMRGIFKIQMSNQPEAVPTFRAQVQAIDYCQTWKEPKPDAGDKISGA
HPSQSASAHVEPCLGFIYSFYNEMSHTYRKAVLYGSWFDHIHGWMPMREEKNFLLLSYEE
LKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKENKMSNYSLLSVDYVVDKAQLL
RKGVSGDWKNHFTVAQAEDFDKLFQEKMADLPRELFPWE

>gi568815579r:47701778_47902983|GENSCAN_predicted_CDS_8|660_bp
nnaaatcggaatggggggaataaaagaaattggaataggagtatgagaggcatctttaag
atacagatgtccaaccagcccgaagctgttccaaccttcagagcccaggtgcaagccata
gattactgccagacatggaaagaacccaaaccagatgctggagataagatctcaggagct
catcccagccaatctgccagtgcccacgtggagccatgtttaggttttatctattcattt
tataatgaaatgtctcacacatatagaaaagcagtgctatatgggtcatggtttgaccac
attcatggctggatgcccatgagagaggagaaaaacttcctgttactgagttatgaggag
ctgaaacaggacacaggaagaaccatagagaagatctgtcaattcctgggaaagacgtta
gaacccgaagaactgaacttaattctcaagaacagctcctttcagagcatgaaagaaaac
aagatgtccaattattccctcctgagtgttgattatgtagtggacaaagcacaacttctg
agaaaaggtgtatctggggactggaaaaatcacttcacagtggcccaagctgaagacttt
gataaattgttccaagagaagatggcagatcttcctcgagagctgttcccatgggaataa