GENSCAN 1.0 Date run: 6-Nov-116 Time: 04:01:08 Sequence gi568815580f:46234275_46556633 : 322359 bp : 46.98% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Intr + 5731 5913 183 2 0 95 77 197 0.997 19.06 1.02 Intr + 19423 19549 127 2 1 110 97 122 0.992 15.04 1.03 Term + 28655 28844 190 2 1 111 37 92 0.858 3.32 1.04 PlyA + 32591 32596 6 1.05 2.13 PlyA - 33327 33322 6 1.05 2.12 Term - 43527 43371 157 2 1 89 48 46 0.102 -1.89 2.11 Intr - 44883 44710 174 2 0 77 35 138 0.403 6.45 2.10 Intr - 58765 58696 70 2 1 106 77 16 0.016 0.54 2.09 Intr - 67023 66905 119 2 2 107 81 77 0.802 9.01 2.08 Intr - 74852 74782 71 2 2 112 40 39 0.055 -0.52 2.07 Intr - 78269 78196 74 0 2 112 77 28 0.461 3.23 2.06 Intr - 95719 95571 149 0 2 35 101 80 0.196 3.88 2.05 Intr - 109791 109588 204 2 0 109 43 147 0.517 10.62 2.04 Intr - 112545 112511 35 0 2 66 85 25 0.162 -2.98 2.03 Intr - 121667 121551 117 2 0 83 2 190 0.022 10.56 2.02 Intr - 154432 154260 173 2 2 84 50 35 0.048 -1.04 2.01 Init - 156022 155944 79 1 1 59 66 55 0.081 1.62 2.00 Prom - 156248 156209 40 -3.46 3.00 Prom + 156678 156717 40 -3.06 3.01 Init + 160650 160776 127 2 1 74 80 59 0.170 4.02 3.02 Intr + 176001 176186 186 1 0 120 31 74 0.686 4.56 3.03 Intr + 180865 180947 83 2 2 66 100 65 0.501 4.86 3.04 Intr + 188363 188478 116 1 2 83 42 90 0.214 3.15 3.05 Term + 191196 191367 172 0 1 111 38 62 0.178 0.80 3.06 PlyA + 198042 198047 6 1.05 4.00 Prom + 198355 198394 40 -3.06 4.01 Init + 199056 199231 176 2 2 92 77 253 0.296 21.42 4.02 Intr + 201015 201122 108 0 0 81 105 40 0.583 4.40 4.03 Intr + 213289 213418 130 1 1 84 115 43 0.859 7.30 4.04 Intr + 216079 216126 48 0 0 110 87 11 0.454 2.08 4.05 Intr + 216430 216525 96 0 0 86 98 96 0.993 10.61 4.06 Intr + 221700 221806 107 2 2 92 75 111 0.989 9.21 4.07 Term + 222245 222362 118 2 1 134 55 62 0.979 5.51 4.08 PlyA + 226397 226402 6 1.05 5.10 PlyA - 226419 226414 6 1.05 5.09 Term - 243678 243198 481 2 1 105 55 898 0.951 82.47 5.08 Intr - 249471 249313 159 2 0 90 22 240 0.659 16.70 5.07 Intr - 250877 250745 133 0 1 121 13 153 0.997 10.80 5.06 Intr - 254868 254698 171 1 0 97 47 368 0.999 33.51 5.05 Intr - 271749 271564 186 1 0 82 65 358 0.565 32.56 5.04 Intr - 273438 273264 175 0 1 85 55 281 0.999 24.01 5.03 Intr - 275541 275424 118 2 1 128 60 256 0.999 27.27 5.02 Intr - 276365 276213 153 1 0 39 64 185 0.996 10.39 5.01 Init - 279682 279612 71 1 2 84 56 60 0.945 2.97 5.00 Prom - 281260 281221 40 -5.26 6.00 Prom + 281669 281708 40 -8.36 6.01 Sngl + 282207 282731 525 2 0 48 47 811 0.999 69.06 6.02 PlyA + 283216 283221 6 -3.74 7.16 PlyA - 283427 283422 6 1.05 7.15 Term - 283752 283746 7 2 1 82 54 0 0.691 -6.66 7.14 Intr - 283982 283855 128 2 2 91 82 280 0.973 27.18 7.13 Intr - 285205 285077 129 1 0 48 27 112 0.787 1.99 7.12 Intr - 287008 286823 186 1 0 62 97 237 0.953 21.89 7.11 Intr - 288035 287827 209 0 2 82 38 341 0.917 27.30 7.10 Intr - 290327 290192 136 2 1 79 82 281 0.999 26.74 7.09 Intr - 290643 290434 210 0 0 71 105 436 0.995 42.71 7.08 Intr - 295057 294903 155 2 2 41 72 258 0.978 19.29 7.07 Intr - 299050 298888 163 1 1 99 98 192 0.863 20.85 7.06 Intr - 300177 300061 117 0 0 72 86 129 0.989 11.76 7.05 Intr - 304063 303882 182 2 2 46 65 331 0.742 26.19 7.04 Intr - 307666 307502 165 2 0 113 16 80 0.901 3.23 7.03 Intr - 308581 308453 129 2 0 67 64 173 0.994 13.47 7.02 Intr - 311147 311043 105 0 0 74 99 118 0.961 11.69 7.01 Intr - 312784 312675 110 0 2 101 49 122 0.600 9.53 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Intr + 118318 118400 83 1 2 116 72 23 0.827 2.78 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_1|166_aa XGPPVVAHYDMSDTNSDPEVVNVDNLLAAAVVQEHSNSVGGQDTGATWRTSGLLEELNAE AGHLDPGFLASDKTSAGNAPLNEEINIASSDSEVEIVGVQEHARCVHPRGGVIQSVSSWK HGSGTQYVSTRQTQSWTAVTPQQTWASPAEVVDLTLDEDSRRKYLL >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_1|501_bp natggacctccagttgtagctcattatgatatgtctgacaccaactctgacccagaagtg gtaaatgtggacaatttattggcggctgcagtagttcaagagcacagtaattctgtaggc ggccaggacacaggagctacctggaggaccagcgggcttctagaggagctgaatgcagag gcaggtcatttggatccaggattcctagcaagtgacaaaacatctgctggcaatgcgcca ctcaatgaagaaattaacattgcgtcttcagatagtgaagtagagattgtgggagttcag gaacatgcaaggtgtgttcatcctcgaggtggtgtgattcagagtgtttcttcatggaag catggctcgggcacgcagtatgttagcaccaggcaaacacagtcatggactgctgtgact ccccagcagacttgggcttcaccagcagaagttgttgaccttaccttggatgaggatagc aggcgtaaatacctactgtaa >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_2|473_aa MAVRLLHHLERWGDLDSDGKEEQDILGLVSKPMPSPKPLLHVLRNLNLPSEKKSQRSIAP QIPIEGSLVQCQPRVLPAPLIMAKRPICIIIIIIITIVVIIHGSHIPNMAGPYWIFKGPP GTGTPKTVPGLNKQREDFLEGSAAHSGTPRHVSRKGQQEEAAASGGMSRSVAQQEQQHQT YASLELGVKEPCVCASRFSPCPGPVLNVAGDSRCGLLQKEPWPQALMAAGEPGHKHKKVK SNQDRLPITKDDGLSSIVMHYITDRDVDTLKLSDLPKKTPKAPSSPHDKVSERPFMQEAS GLPCALPLAKLQPLERVENSSSVCQATLTTITALADGTHTGVRDDRTINRIISLILPGRG FKASSWKESVLIFIDCLQGTGFCPMVLSSMGNNWFLLPMAPAALPAGPSGYVKPAFTASL SCIWAVPGCLPDGLTLIDIPGGLSPQVTSLFQAMLATRAHGTKRHSPGFQTYS >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_2|1422_bp atggctgtgaggcttcttcaccacctggaaagatggggtgatttagacagtgatgggaag gaggagcaggacatcctaggattggtgagtaaacccatgcccagccccaagccccttctt catgtcttgaggaacctaaacctcccgagtgaaaagaagtcacagaggtccatcgctccc cagatcccaattgagggcagcttggttcagtgccaaccccgtgtgcttcctgcgcccttg atcatggccaagaggcccatctgcatcatcatcatcatcatcatcaccattgtcgtcatc atccacggcagtcacatacccaacatggcagggccatactggatatttaagggtcctcca ggcacagggacccctaaaactgtcccaggcctgaacaagcagagggaggacttcctggag ggctcagctgcacacagcggcacacccaggcatgtttcaaggaaaggacagcaggaggaa gcagcagcatccgggggaatgtcccgctcagtggcccaacaagagcagcagcaccagact tatgccagccttgagctcggggtcaaggagccctgtgtctgtgcttccaggtttagccca tgccctggccctgtgctgaacgtggcaggggattctagatgcggtctgctgcagaaagag ccgtggccccaggcactgatggccgctggggagccagggcataaacacaagaaagtaaag agtaatcaggacaggctgcccataacgaaggatgatggattgagttctattgtcatgcac tatattacagacagggacgttgacaccctgaagttaagtgacttgcccaagaaaacacca aaggctccttctagcccacatgataaagtcagtgagagacctttcatgcaggaagcatct gggctcccttgtgccctccccctggccaagctacagcccctggaacgcgtggagaacagc tcttctgtttgccaagccacactcaccaccatcaccgcactagcagatggcacacacact ggtgtcagggacgaccgaacaattaacaggatcatctctttaattctccctggaagaggg ttcaaggcaagctcctggaaagagtctgtactcatcttcatcgactgccttcaaggcact ggcttctgccccatggtgctgagctcaatgggcaataattggttcttacttcccatggcc cctgcagcactgcctgctggcccctctggctatgtgaaaccagctttcacagcatcactc tcatgcatttgggctgttccaggttgcttgcctgatgggttgacacttattgatatccct gggggtctgagccctcaggtgacttcgctttttcaggccatgcttgctacaagggcccat ggcaccaagagacattctcctggatttcagacctattcttga >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_3|227_aa MNFHVCGALLRMCYNVHAKPHVACGDSFFRTKNLPETQKCHTAIPNKRERKLETENVFQV LNVLLVLCLQLSSFQLLCTHTWLPTVKVEEEAASQLCEGLNPLGCLHDLCQSLTDTHRNV NTHVSPKAVTLPMVTVQFGNFNYDQAKRRVDVAGNLHHLLVGQKGPWKYSSPLFLGGLEG SASQPWSLEDETPLSSRASPGAGASGPPARESVFPEEALLPSTVPGI >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_3|684_bp atgaactttcacgtatgtggggctttgctccgaatgtgctataatgtccatgcaaagcct catgtagcctgtggagacagcttctttcggaccaagaatctgccagaaactcagaagtgt catacagctatccctaataagagagagagaaagctagagacagagaatgtgttccaggtg ctcaatgtcttactggtgctgtgcctgcaactatcatcattccagcttctgtgtacacac acctggcttcccacagttaaggtggaggaggaggcagccagccagctgtgtgaaggactg aacccgttaggctgcctacatgacctctgccagagtttgactgacactcatcgaaatgtg aatacccacgtgagccccaaggcagtgaccttaccaatggtgactgtccagtttggcaac tttaactatgatcaggccaaaaggagggtagatgttgcagggaatttgcatcatctcctg gtgggccaaaaagggccctggaagtactccagcccccttttccttggaggactggaaggc agtgcctctcagccctggagtcttgaggatgaaactccactttcctccagagcaagtcct ggggctggagcatcaggacctccagctcgggagtcagtcttccctgaagaagccttgctg ccttccacggtccctggcatctga >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_4|260_aa MAPAHQHSGALHQSLTPLPTLQFQDVTGPSFLPQALHQQYLLQQQLLEAQHRRLVSHPRR SQERVSVHPHRLHPSFDFGQLQTPQPRYLAEGTDWDLSVDAGLSPAQFQVRPIPQHYQHY LATPRMHHFPRNSSSTQMGLNPSRHTSAVRESYEELLQLEDRLGNVTRGAVQNTIERFTF PHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLA MSKKCPICRVDIETQLGADS >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_4|783_bp atggccccggcccaccagcacagcggcgccctgcaccagtcgctgaccccgctgcccacc ctgcagttccaggacgtcacaggtccctccttcctacctcaggccctgcaccagcaatac ctcctgcagcagcagctcctggaagcccagcaccgcaggctggtctcgcaccccaggcgg agtcaggagcgtgtatctgtccacccccaccgcctccatcccagcttcgacttcggccaa ctgcagacacctcagcccaggtatttggctgagggcactgactgggatctcagtgtggat gctggcttgagtcctgctcagttccaggtgcggcccatccctcagcactatcagcattac ctagccactcctcgaatgcaccactttcccagaaactcctcctccacacagatgggacta aatcccagcagacacacctccgccgtacgggagagctatgaggagctgctgcagctcgag gacaggttgggtaatgtgactcggggagctgtacagaacaccattgagaggttcaccttc ccccacaagtataagaagcgaagaccccaggatggcaagggcaagaaggatgagggggag gagtcagacacagatgagaaatgcacaatttgtctgtctatgctggaagatggagaagat gtgagacgcctaccctgtatgcatctctttcaccaactgtgcgtggaccagtggctcgcc atgagcaagaaatgccccatctgccgagtggacattgagacacaactgggagccgacagc tga >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_5|548_aa MDTYIITEANSLLLTSPRLGIFSVKHDDCHAEPHLQCHLHYPEGLISSIIWNQSAVKQSV SIEGRIVHAALWEEQFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNM NTGDLTMFYYGDWLSQRKGKKTLVCEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANV FIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGW HLSYVDVKDNSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKICDELEETTYEIVIETG NGGETRENVWLILEGRKNRSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASLCVGHL AREDRFIPKRELAWHVKTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTTESFA SKVQSLVPVKYEVIVTTGYEPGAGTDANVFVTIFGANGDTGKRELKQKMRNLFERGSTDR FFLETLELGELRKVRLEHDSSGYCSGWLVEKVEVTNTSTGVATIFNCGRWLDKKRGDGLT WRDLFPSV >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_5|1647_bp atggacacttacatcatcactgaagccaactccctgctgctcaccagccccaggcttgga attttctctgtgaagcacgacgattgccatgcagagccacatctccagtgccacctgcat taccccgagggccttatcagcagtatcatctggaatcagtcagcagtcaagcaatcagtc agcattgaaggtcgaattgtacatgcggcactgtgggaagagcagtttgagcgggagcag aacgacaccttcatcatggagatcctagacattgctccattcaccaagatgcggatccgg attgatggcctgggcagtcggccggagtggttcctggagaggatcctactgaagaacatg aacactggagacctgaccatgttctactatggagactggctgtcccagcggaagggcaag aagaccctggtgtgtgaaatgtgtgccgttatcgatgaggaagaaatgatggagtggacc tcctacaccgtcgcagttaagaccagcgacatcctgggagcaggcactgatgccaacgtg ttcatcatcatcttcggggagaacggggatagtgggacactggccctgaagcagtcggca aactggaacaagtttgagcggaacaacacggacacattcaacttccctgacatgctgagc ttgggccacctctgcaagctgagggtctggcacgacaacaaagggatatttcctggctgg catctgagctatgtcgatgtgaaggacaactcccgcgacgagaccttccacttccagtgt gactgctggctctccaagagtgagggtgacgggcagacggtccgcgactttgcctgtgcc aacaacaagatctgtgatgagctggaagagaccacctacgagatcgtcatagaaacgggc aacggaggcgaaaccagggagaacgtctggctcatcctggagggcaggaagaaccgatcc aaagagtttctcatggaaaattcttctaggcagcgggcctttaggaaggggaccacagac acgtttgagtttgacagcatctacttgggggacattgcctccctctgtgtgggccacctt gccagggaagaccggtttatccccaagagagaacttgcctggcatgtcaagaccatcacc atcaccgagatggagtacggcaatgtgtacttctttaactgtgactgcctcatccccctc aagaggaagaggaagtacttcaaggtattcgaggttaccaagacgacagagagctttgcc agcaaggtccagagcctggtgcccgtcaagtacgaagtcatcgtgacaacaggctatgag ccaggggcaggcactgatgccaacgtcttcgtgaccatctttggggccaacggagacaca ggcaagcgggagctgaagcagaaaatgcgcaacctcttcgagcggggcagcacagaccgc ttcttcctggagacgctggagctgggtgagctgcgcaaggtgcgcctggagcacgacagc agtggctactgctcaggctggctggtggagaaggtggaggtcaccaacaccagcaccggc gtggccaccatcttcaactgtggcaggtggctggacaagaagcggggggatggactcacc tggagagacctcttcccttctgtctga >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_6|174_aa MGKAPACTSCSVHEKKCCLVLKSFSSHILIITNTTFITIIIPTIITFIPITTATIIIIII ITITIIIPTIITFIPITALIIIITIITIIIIIITIITIIISTITFTPITTTIIIIIPTII NIIIPTITFIPITIITTIIPVIIPTIQHHQYHHPHLSSTMSSSPPQSRSIECLL >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_6|525_bp atgggcaaagctccagcttgcacgagctgctccgtccatgaaaagaaatgctgcctggtc ctcaaaagcttcagtagccacatcctcatcatcaccaacaccaccttcatcacaattatc atccctaccatcatcaccttcatccctatcaccactgccaccatcataatcatcatcatc atcaccatcacaattatcatccctaccatcatcaccttcatccctatcactgccctcatc atcataatcaccatcatcaccatcattatcatcatcatcaccatcatcacaattatcatt tctaccatcaccttcacccctattaccaccaccatcatcatcatcatccctaccatcatc aacatcatcatccctaccatcaccttcatccctatcaccatcatcactaccatcatccca gtcatcatccctaccattcagcaccatcaatatcaccatcctcacttatcatccacaatg tcctcatcaccaccccaatccagaagtattgagtgcctactataa >gi568815580f:46234275_46556633|GENSCAN_predicted_peptide_7|710_aa XYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEDKSTTFSVTIKTGVKKNAGTDAN VFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPG WFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYT SDVFAAGTDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIE KIRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIRELVPYD IFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGER YLGKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNED EFLFLCGRWLSLKKEDGRLERLFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVT GPMADYVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFS RGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKD RGDGITSRVFDLLDAMVVNIGVKACTEYFKPHSVLAEILDAARKACNPHQDNDGNMTAVI NSSGLEVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQLDKKKARP >gi568815580f:46234275_46556633|GENSCAN_predicted_CDS_7|2133_bp nngtactactttccatgccaacgttggctggcagtggaggaagatgatggccagctgtcc agggagctgttgccagtggatgagtcctatgtgctgccacagagcgaggaggataaatct accacattctcagtgaccataaagactggggttaagaagaatgcgggcacagatgctaat gtcttcatcacactctttggcacacaggatgacactggaatgaccctcctgaagtcctcc aagacaaacagcgataagtttgagagggacagcattgaaatcttcacggtggagacgctg gatctgggagacctgtggaaagtccggcttggccatgacaacacaggcaaggccccaggc tggtttgtagactgggtagaggtggatgccccatctcttgggaagtgcatgacgtttccc tgtggccgctggctggccaaaaacgaagacgacgggtccatcatcagagacctcttccat gcagagcttcagacgaggctgtacacaccatttgttccttacgagatcaccctctacacc agtgatgtctttgctgctgggacagatgccaacatcttcatcatcatctatggctgcgat gccgtgtgcacccagcagaagtatctgtgtaccaacaagagggaacagaagcagttcttt gagaggaagtctgcctcccgcttcatcgtagagttagaagatgtgggagaaatcattgaa aaaattcggattggccataataacacgggcatgaatcctgggtggcactgctctcacgtg gacatccgcaggctcctcccggataaagacggtgcagagaccttgactttcccatgcgat cggtggcttgccacctctgaggatgacaaaaagaccattcgagaactggttccatatgac atcttcactgagaaatacatgaaagatgggtccttacggcaagtctacaaggaagtagaa gagcctctggacattgtgctgtactcggtgcagatcttcacagggaacattcctggggca gggacggatgccaaggtgtacatcaccatctatggagacctcggggacactggggagcga taccttggcaagtcagagaaccggaccaacaagttcgagagaggaacggctgacaccttc atcatcgaggccgctgacctaggcgtcatctacaagatcaagctccgccatgacaactcc aagtggtgcgcagactggtacgtggagaaggtggagatctggaatgacaccaacgaggac gagttcctgttcctatgcgggcgctggctctccctgaagaaggaggatgggcgactcgag aggctcttttacgagaaggagtacactggggaccgcagcagcaactgcagcagccctgct gacttctgggagatcgccctgagctccaagatggccgatgtcgacatcagcacagtgacc gggcccatggctgactacgttcaagagggcccaattattccctactatgtgtcagtcacc actgggaagcacaaggacgcggccactgacagccgagccttcatctttctcatcggggag gatgatgaacgtagtaagcgcatctggttggactacccccgagggaagaggggcttcagc cgtggctctgtggaggagttctacgtcgcaggcttggatgtgggcatcatcaagaaaata gagctgggccatgacggggcctcccctgagagctgctggctggtggaagagttgtgtttg gcagtgcccacccagggcaccaagtacatgttgaactgtaactgctggctggccaaggac agaggcgacggcatcacctcccgtgtcttcgacctcttggatgccatggtggtgaacatt ggggtgaaggcctgcacagaatacttcaaacctcacagtgtcctggcagagattctagat gctgccagaaaagcatgcaacccccaccaggacaatgatgggaacatgaccgctgtgatt aatagctccggtttggaggttctctatgaaatgacggtgtggacaggggatgtggttggc gggggcactgactccaacatcttcatgaccctctacggcatcaacgggagcacagaggag atgcagctggacaaaaagaaagccagaccatga