GENSCAN 1.0	Date run:  6-Nov-116	Time: 04:59:41

Sequence gi568815588f:123048379_123250120 : 201742 bp : 44.61% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2671   2808  138  0  0   74   83    29 0.422   1.66
 1.02 Intr +   4683   4782  100  2  1   54   27   104 0.392   0.58
 1.03 Term +   5317   5387   71  2  2   90   45    98 0.841   3.80
 1.04 PlyA +   5476   5481    6                               1.05

 2.08 PlyA -   6174   6169    6                               1.05
 2.07 Term -   6793   6771   23  2  2  105   48    16 0.334  -2.23
 2.06 Intr -  14647  14464  184  1  1   32   36   157 0.041   4.26
 2.05 Intr -  25097  24864  234  2  0  -30   72   235 0.058   7.99
 2.04 Intr -  37286  37155  132  2  0   -3   89   178 0.958   9.64
 2.03 Intr -  40676  40524  153  2  0   53  119    52 0.803   5.07
 2.02 Intr -  50598  50518   81  0  0   69   75    81 0.402   4.73
 2.01 Init -  52481  52356  126  2  0   91   42    33 0.296  -0.81
 2.00 Prom -  58688  58649   40                              -1.56

 3.03 PlyA -  58863  58858    6                               1.05
 3.02 Term -  63680  63532  149  0  2   54   38   117 0.539   1.36
 3.01 Init -  69885  69705  181  0  1   83    0   238 0.349  11.85
 3.00 Prom -  75076  75037   40                              -4.26

 4.00 Prom +  79195  79234   40                              -5.86
 4.01 Init +  86055  86637  583  2  1   54   64   310 0.839  20.55
 4.02 Intr +  87572  88072  501  0  0   54   81   484 0.020  37.25
 4.03 Term +  88680  89353  674  1  2   83   54  1200 0.986 110.02
 4.04 PlyA +  92276  92281    6                               1.05

 5.00 Prom +  92354  92393   40                              -5.46
 5.01 Init +  99571  99683  113  0  2   44   58   141 0.121   4.43
 5.02 Intr + 100000 100268  269  1  2   47   82   242 0.139  16.68
 5.03 Term + 101192 101745  554  0  2  116   47   879 0.999  81.08
 5.04 PlyA + 102275 102280    6                               1.05

 6.00 Prom + 103529 103568   40                              -7.16
 6.01 Init + 106369 106738  370  0  1   75   17   498 0.782  36.56
 6.02 Intr + 109351 109502  152  2  2  106  102    29 0.970   5.98
 6.03 Intr + 112029 112187  159  2  0   29   72   160 0.990   8.68
 6.04 Intr + 113858 114035  178  1  1  101  103   103 0.999  12.59
 6.05 Term + 114234 114454  221  1  2   70   48   174 0.540   8.80
 6.06 PlyA + 115493 115498    6                               1.05

 7.03 PlyA - 115529 115524    6                               1.05
 7.02 Term - 123497 123154  344  0  2   32   49   308 0.603  15.97
 7.01 Init - 155200 155083  118  1  1   54   64   103 0.723   4.89
 7.00 Prom - 160475 160436   40                              -1.26

 8.00 Prom + 164280 164319   40                              -5.86
 8.01 Init + 170916 171022  107  2  2   81   37   131 0.154   5.49
 8.02 Term + 177558 177690  133  0  1   56   53   110 0.188   1.86
 8.03 PlyA + 178887 178892    6                               1.05

 9.03 PlyA - 182715 182710    6                               1.05
 9.02 Term - 192226 191990  237  1  0   67   48   279 0.906  17.97
 9.01 Intr - 197190 197117   74  1  2   17  111    64 0.344   0.73

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  11924  11988   65  1  2   37  116    60 0.820   4.32
S.002 Intr -  78880  78752  129  1  0   64  103    83 0.861   8.29
S.003 Term +  86919  87076  158  1  2  112   44    45 0.891   0.60
S.004 Init +  87673  88072  400  0  1  104   81   557 0.967  51.43
S.005 Init + 100001 100268  268  1  1   83   82   233 0.855  19.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_1|102_aa
GLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMG
GVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_1|309_bp
ggcctccaacaccaagtggctcacgtggccacccagctggaagctgcaagattactaaca
tacaatgctgctaggcttttagaagctggaaagccattcataaaagaagcgtcaatggcc
aaatactatgcatcagagattgcaggacaaacaacgagtaaatgtatcgagtggatgggg
ggagtaggctacaccaaagattaccctgtggagaaatacttccgagatgcaaagattggt
acgatatatgaaggagcttccaacatccagttgaacaccattgcaaagcatatcgatgca
gaatactga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_2|310_aa
MTCRRMSGEGSFSLEGLSQNYSQKALETYSQDMPQRSSLSRQSGNDLSILHRHSLAEPRE
THEDVKDSKHQGFSRWALVIFQQQHFPRVAPQSVQQDDGLCPLIVPEGPRPVSWHLKGAL
TGLGAVKKSEDDIIEGDLAVSEIKEEGGCEPDEDPKRMCCQEAQVRQANSLSPPQTVHGT
SRGQGSFLNPLLFVESTCSLGLRHRCGLHGPTEDVPESLDVAVTGECIYSGVFGALPFMD
SKITKHDNEDGGMSRADSVDDQEGGRADNMDTLDKGMIHVLIGTEQNCARFHHATQNDVQ
FKTCMSLSAA

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_2|933_bp
atgacctgcaggagaatgagtggagagggctctttctctctcgaggggctttcacagaac
tactcccagaaggccctggagacctactctcaggacatgcctcagcggtcaagtctttcc
agacagagtggcaatgatcttagcatccttcaccggcacagccttgccgagcccagggag
acgcatgaagacgtgaaggactccaagcatcaaggcttctctcggtgggccctggtcata
ttccaacagcagcatttccccagagtggctccccagagtgttcaacaggacgatggcctg
tgtcccctcattgttccagaaggccccaggcccgtctcatggcatctgaagggggctctg
actgggttaggagcagtgaagaagagtgaggatgatatcatagagggtgacttggcagtt
agtgagatcaaggaggagggtggctgcgagccagatgaggaccccaagaggatgtgctgc
caggaagcacaggtaagacaagcaaacagcctgagtcccccacaaacagtgcatggaacc
agcagaggccagggctccttcctcaaccccttgctcttcgtggagtccacctgctccctg
ggcctcagacacagatgtggcctgcatgggcccacggaggacgttccagagtccctcgat
gtggccgtcacaggggagtgcatctactcaggagtgtttggggcattacccttcatggat
tcaaagatcaccaagcatgacaatgaagatggcgggatgtcaagagcagacagtgttgat
gaccaagaagggggtagagcagacaacatggatacgctggacaaagggatgattcacgtt
cttattgggacggagcagaattgtgcaagatttcatcatgctactcagaacgacgtgcaa
tttaaaacttgtatgtctttatcagcagcgtga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_3|109_aa
MVSAVQLGACLPARAGGRLAAVLLPVQALGGGSGGEAVTDFECPDPSNTPFGACFRCSRI
ARIVKLFDFSQPGTSGGVESASGKSAIGFLFREAKIHATQHNLSIFISI

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_3|330_bp
atggtttcggccgtccagcttggggcctgcctgccagctcgggcgggtggccgacttgct
gcagtgctgctcccagtccaggcactgggtggcggctctggtggtgaagcagtcactgac
ttcgaatgtcccgatccatccaacactccgtttggggcgtgcttccggtgttcccgcata
gctaggattgtcaagctctttgattttagccaaccaggtacaagtggaggtgttgaaagc
gcctctggaaagtctgctataggatttctgttccgtgaagccaaaattcatgctacccag
cacaaccttagtatcttcatctctatttaa

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_4|585_aa
MSLKCLPHGLLVRTGELFLKPVEWNVLSLSRSAKVQCGSLRTSLPSRRAADAAACRGGGS
YAAAPSVHLAPIKALVRQLQTPAGRRDFLGESAVVGVTDSELIREPWAPAARAEGCPSES
SRRCREAVAPAAPPSDARVLAGSARIRTQAHPLLVPGEGSLFGFPGLKAKATRISESEDA
VRGLTPGFPYYRLDVEFRLWSDFRPLACSPRRPPVPLPPSRGPGGEGTMPEPGPDAAGTA
SAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAA
AKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRP
EASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAA
PGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYL
SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE
NSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_4|1758_bp
atgagtcttaaatgtctgcctcatgggcttctcgtgcgaaccggggagctgtttttaaag
ccagtggagtggaatgtcctttcactaagccgttctgcaaaggtccagtgtggttctcta
aggacttcgctgccgtcgagacgcgcagcggatgccgctgcttgccgcggcggaggaagc
tacgccgctgcgccttcggttcaccttgcccccattaaagcgttagttagacagctccaa
acgccagctggccggagagacttcctgggagaaagtgctgtcgtcggggtcacagactcg
gagttgatccgcgagccttgggcaccggcggccagagcagaggggtgcccttccgagagc
agccgtcggtgccgagaagctgttgccccagcagccccaccgagtgacgcgcgggttttg
gccgggtcagcgcgcatacgcacacaggcacacccactcctggtcccgggggaaggctca
ctcttcggttttccagggctaaaggccaaggccacgcggatttctgagtccgaagacgca
gtgcgaggacttacacctggattcccttactatcggctggatgttgagttccgtttatgg
tctgatttccggcctctcgcctgctcgccccgccgcccgcctgtcccgctccctccctcc
cggggacccggaggagaggggaccatgccggaacccgggccggacgctgccggcaccgcc
agcgcacagccccaaccgccgccgccccccccacccgctcccaaggagtccccgttctcc
atcaagaacctgctcaacggagaccaccaccggccgccccctaagcctcagccgccccca
cggacgctcttcgcgccagcctcggctgccgccgccgccgccgctgccgctgccgcggcg
gccaagggggccctggagggcgccgcgggcttcgcgctctcgcaggtgggcgacctggct
ttccctcgctttgagatcccggcgcagaggtttgccctgcccgcgcactacctggagcgc
tccccagcctggtggtacccctacaccctgacccccgccggcggccacctcccgcgacct
gaagcctcggagaaggccttgctgagagactcctcccccgcctccggcacagaccgcgac
tctccggagccactgctcaaggccgaccccgatcacaaggagctggactccaagagcccg
gacgagatcattctggaggagagcgactccgaggaaagcaaaaaggaaggcgaagcggcg
ccaggcgcggccggggcgagcgtaggggcggcggcggccactccgggcgcagaagactgg
aagaagggcgctgaaagtccagagaagaagccggcgtgccgcaagaagaagacgcgcaca
gtcttctcgcgcagccaggtcttccagctcgagtccaccttcgacatgaagcgctatctg
agcagctcggagcgagccggcctggccgcgtccctgcacctcaccgagacgcaggtcaag
atctggttccagaaccgccgcaacaagtggaagcggcagctggcggcggagctggaggcg
gccaacctgagccatgccgcggcgcagcgcatcgtgcgggtgcccatcctctaccacgag
aactcggcggccgagggcgcggcggctgcagccgcgggggccccggtgccagtcagccag
ccgctgctcaccttcccgcaccccgtctactactcgcacccggtggtctcttccgtgccg
ctgctacggccggtctga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_5|311_aa
MPARPSARSGGAPVLCAWPERFEIFRGRSAALRLAAFGMGSKEDAGKGCPAAGGVSSFTI
QSILGGGPSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQGPKHHP
PIPFPCLGTPKGSGGSGPGGLERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAE
RQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRN
KWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSAL
PLYNLYNKLDY

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_5|936_bp
atgcccgccaggccctcggcgcgctctgggggcgcaccggtgctgtgtgcctggccggag
cgttttgaaattttccggggccgctcggcggcgctgcgattggccgcgttcgggatgggc
agcaaagaagatgcgggcaaggggtgtccggcggccggtggcgtctccagcttcaccatc
cagtccatcctgggcgggggcccctcggaggcaccgcgggagcccgtcggctggccagcc
aggaagcgcagcctgtccgtgtcctcggaggaggaggagccggacgacggctggaaggcg
cccgcctgcttctgcccagaccagcacggccctaaggagcagggccccaagcaccatccc
cccatcccttttccttgcctgggtacccccaagggcagcggaggctcgggcccgggcggc
ttggagcgcacgcctttcctctctccttcgcactcggactttaaagaagagaaagagagg
ctcctgcccgcgggctcgccctcgccggggtccgagcggccgcgggacggcggcgctgag
cggcaggccggcgcggccaagaagaagacgcgcaccgtcttttcgcgcagccaggtgtac
cagctcgagtccaccttcgacatgaagcgctacctgagcagctcggagcgcgcctgcctc
gcctccagcctgcagctcacggagacccaggtaaagacttggttccagaaccgccgcaac
aagtggaagcggcagctctcggctgagctggaggcggccaacatggcgcacgcgtcggcg
cagactctggtgagcatgccgctggtgttccgggacagttcgctgctgcgcgtgccggtg
ccgcgctcgctcgcctttcccgcgccgctctactacccgggaagcaacctctcggcctta
cctctctacaacctatacaacaagctcgactactga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_6|359_aa
MGRVRTLAGECSAQAQAQSLLAVVLSAPPSGGTPSARLSVRSPSPRDPWGLWAPVLQMTG
SNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCA
FYVENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSV
SGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAV
EYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAISFHNIHNTFATGGSDGFVNIWDPFN
KKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETKPK

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_6|1080_bp
atggggcgagtccggaccttggcgggcgagtgctcggcgcaggcgcaagcgcagagtctc
ctcgcggtcgtcctctcggcccctccctctggggggacccccagtgccaggctgtcagtg
cgcagccccagcccgcgggacccctggggactctgggcgcctgttctgcagatgaccggt
tctaacgagttcaagctgaaccagccacccgaggatggcatctcctccgtgaagttcagc
cccaacacctcccagttcctgcttgtctcctcctgggacacgtccgtgcgtctctacgat
gtgccggccaactccatgcggctcaagtaccagcacaccggcgccgtcctggactgcgcc
ttctacgtagaaaatcttgttgggacccatgatgcccctatcagatgtgttgaatactgt
ccagaagtgaatgtgatggtcactggaagttgggatcagacagttaaactgtgggatccc
agaactccttgtaatgctgggaccttctctcagcctgaaaaggtatataccctctcagtg
tctggagaccggctgattgtgggaacagcaggccgcagagtgttggtgtgggacttacgg
aacatgggttacgtgcagcagcgcagggagtccagcctgaaataccagactcgctgcata
cgagcgtttccaaacaagcagggttatgtattaagctctattgaaggccgagtggcagtt
gagtatttggacccaagccctgaggtacagaagaagaagtatgccttcaaatgtcacaga
ctaaaagaaaataatattgagcagatttacccagtcaatgccatttcttttcacaatatc
cacaatacatttgccacaggtggttctgatggctttgtaaatatttgggatccatttaac
aaaaagcgactgtgccaattccatcggtaccccacgagcatcgcatcacttgccttcagt
aatgatgggactacgcttgcaatagcgtcatcatatatgtatgaaatggatgacacagaa
catcctgaagatggtatcttcattcgccaagtgacagatgcagaaacaaaacccaagtga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_7|153_aa
MIPDSKTDSGPWMLGYLLPRALLICHSLGLQFVLSFRNGNDKRRNNGRAKKGHGHVQPIC
CTNCAQCVPKDKAIKKFVIRNIVEAAAVRDISEAGIFDAYVLPKLYVKLHYCVSCAIHNK
VVRNQSCEARKDRTPPPRFRPAGAAPPPLPKPI

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_7|462_bp
atgatacctgattccaagaccgactctggtccctggatgctgggctacctccttcctagg
gccctgctgatctgccactcactgggcttgcagtttgtgctgtccttccgtaatgggaat
gacaaaagaaggaacaacggtcgtgccaaaaagggccatggccacgtgcagcctatttgc
tgcactaactgtgcccaatgcgtgcccaaggacaaggccattaagaaattcgtcattcga
aacatagtggaggccgcagcagtcagggacatttctgaagcgggcatcttcgatgcctat
gtgcttcccaagctgtatgtgaagctacattactgtgtgagttgtgcaattcacaacaaa
gtagtcaggaatcaatcttgtgaagcccgcaaggaccgaacacccccaccccgatttaga
cctgcgggtgctgccccacctcccctaccaaagcccatataa

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_8|79_aa
MMFFLFAMEVGWSCRFCSLILDHGSTLVLVLTSLQGFPKSSPSSSKFYKSPGQGQNATSR
FAKTARVTFTPVHKFLISI

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_8|240_bp
atgatgttctttctcttcgcaatggaagtaggatggagctgccgattctgctccctgatc
ctggaccacggctccacccttgtcctggtgttgacatcccttcagggattccctaaatca
tctccctcaagttcaaagttctacaaatctccagggcaggggcaaaatgccaccagtcgc
tttgctaaaacagcaagagtcacctttactccagttcacaagttcctcatctccatctga

>gi568815588f:123048379_123250120|GENSCAN_predicted_peptide_9|103_aa
XRLTVELEKPFGQAELYKMSSFLMQVIHTARQIPGGPSKGPRAKVIPVEISGTWIHKIPL
EILSLAFDDDDDDDDDDDDAETWGLPRLYLLGILGKGAHQNIF

>gi568815588f:123048379_123250120|GENSCAN_predicted_CDS_9|312_bp
ntgcgcctcaccgtggagctggagaagccctttgggcaggcagaactctacaaaatgagc
tcttttctgatgcaggtgatacacacagccagacaaatcccaggtggcccatccaaagga
ccaagagcaaaagttattccagttgagatcagtggaacttggattcacaaaatccccctg
gagatcctctctctggcctttgatgatgatgatgatgatgatgatgatgatgatgacgca
gaaacatgggggcttccaaggctgtacctcctaggcatcctggggaaaggagcccatcag
aacatcttctag