GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:37:58

Sequence gi568815588r:71997337_72313298 : 315962 bp : 46.87% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3592   3718  127  0  1   73   94    60 0.219   5.42
 1.02 Intr +   8457   8646  190  1  1   17  100   116 0.193   4.34
 1.03 Term +   9836  11135 1300  2  1  143   50  2911 0.993 283.87
 1.04 PlyA +  14716  14721    6                               1.05

 2.00 Prom +  30504  30543   40                              -3.06
 2.01 Init +  47140  47434  295  0  1   95   82   108 0.678   8.49
 2.02 Term +  58657  58883  227  2  2   89   52    97 0.639   3.14
 2.03 PlyA +  60509  60514    6                               1.05

 3.11 PlyA -  61719  61714    6                               1.05
 3.10 Term -  65569  65424  146  2  2  105   42   269 0.238  22.07
 3.09 Intr -  65826  65689  138  1  0  106   64   255 0.999  25.34
 3.08 Intr -  66904  66842   63  2  0   94   94   134 0.801  13.29
 3.07 Intr -  69784  69566  219  2  0   65   70   363 0.998  30.47
 3.06 Intr -  70396  70277  120  2  0  107   58   131 0.999  12.47
 3.05 Intr -  70965  70851  115  0  1   86   94   144 0.999  14.82
 3.04 Intr -  73090  72976  115  0  1   89   65    77 0.865   5.95
 3.03 Intr -  74922  74808  115  1  1  112   94   217 0.999  24.21
 3.02 Intr -  75212  75167   46  2  1  140   87    49 0.918   7.98
 3.01 Init -  90992  90804  189  2  0   85   86   589 0.968  55.41
 3.00 Prom -  95243  95204   40                              -6.46

 4.12 PlyA -  95949  95944    6                               1.05
 4.11 Term - 100114  99998  117  1  0   94   51   126 0.946   8.04
 4.10 Intr - 130831 130746   86  2  2   40   86    45 0.010  -0.96
 4.09 Intr - 135845 135721  125  1  2   73  115    47 0.098   6.13
 4.08 Intr - 155652 155533  120  2  0   86   76   102 0.656   8.41
 4.07 Intr - 164338 164202  137  1  2   72   78    99 0.643   6.67
 4.06 Intr - 199653 199475  179  1  2  106  115   171 0.999  21.24
 4.05 Intr - 206188 206091   98  0  2   90   77     8 0.421  -0.45
 4.04 Intr - 213495 213396  100  1  1   55   78   123 0.555   7.17
 4.03 Intr - 215995 215851  145  1  1   34   84   152 0.043   9.26
 4.02 Intr - 226688 226512  177  2  0   32   44   117 0.006   1.82
 4.01 Init - 229295 229254   42  2  0   62   66    38 0.008  -2.58
 4.00 Prom - 229783 229744   40                              -4.76

 5.00 Prom + 229834 229873   40                              -5.16
 5.01 Init + 230777 230825   49  1  1   67   70    -3 0.180  -3.09
 5.02 Intr + 233030 233104   75  0  0  101  103    33 0.972   5.59
 5.03 Term + 235665 235780  116  1  2   96   43   175 0.966  12.53
 5.04 PlyA + 236388 236393    6                               1.05

 6.00 Prom + 240057 240096   40                              -2.96
 6.01 Init + 246404 246583  180  1  0   84   32    75 0.037   0.68
 6.02 Intr + 263471 263605  135  1  0  157   47    13 0.060   4.86
 6.03 Intr + 276821 277085  265  1  1  112  105   298 0.994  30.99
 6.04 Term + 277359 277852  494  1  2  112   43   799 0.999  72.57
 6.05 PlyA + 278679 278684    6                               1.05

 7.00 Prom + 281500 281539   40                              -4.76
 7.01 Init + 283347 283424   78  2  0   96   73   107 0.563  11.07
 7.02 Intr + 288398 288452   55  1  1   48  103    31 0.353  -0.85
 7.03 Intr + 294555 294623   69  1  0  101   94    60 0.707   7.05
 7.04 Intr + 297051 297088   38  1  2  118   53     3 0.421  -2.22
 7.05 Term + 298564 298854  291  0  0  115   47   156 0.892   9.54
 7.06 PlyA + 299662 299667    6                              -0.45

 8.02 PlyA - 299757 299752    6                               1.05
 8.01 Sngl - 303535 303020  516  1  0   88   43   235 0.926  13.11

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  53477  53627  151  1  1   99   82    41 0.908   4.80
S.002 Init - 215962 215851  112  1  1   56   84   115 0.902   8.27
S.003 Sngl + 218306 218551  246  1  0   53   48   197 0.829   7.28
S.004 Term + 263471 263538   68  0  2  157   49    29 0.811   4.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_1|538_aa
MEDEKPTPATLGPQEIVDAVGSIIRWRGAGQKPDETAGRWQAAECPRLARGAPTAPPFPM
EKGLTLPQDCRDFVHSLKMRSKYALFLVFVVIVFVFIEKENKIISRVSDKLKQIPQALAD
ANSTDPALILAENASLLSLSELDSAFSQLQSRLRNLSLQLGVEPAMEAAGEEEEEQRKEE
EPPRPAVAGPRRHVLLMATTRTGSSFVGEFFNQQGNIFYLFEPLWHIERTVSFEPGGANA
AGSALVYRDVLKQLFLCDLYVLEHFITPLPEDHLTQFMFRRGSSRSLCEDPVCTPFVKKV
FEKYHCKNRRCGPLNVTLAAEACRRKEHMALKAVRIRQLEFLQPLAEDPRLDLRVIQLVR
DPRAVLASRMVAFAGKYKTWKKWLDDEGQDGLREEEVQRLRGNCESIRLSAELGLRQPAW
LRGRYMLVRYEDVARGPLQKAREMYRFAGIPLTPQVEDWIQKNTQAAHDGSGIYSTQKNS
SEQFEKWRFSMPFKLAQVVQAACGPAMRLFGYKLARDAAALTNRSVSLLEERGTFWVT

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_1|1617_bp
atggaagatgagaagcccacaccagccacactaggcccccaggagattgtggacgccgtc
gggagcattattcggtggaggggtgcggggcagaagccagatgagacagctgggaggtgg
caggcagctgagtgtccaaggctggcccgaggagcccccacggccccacctttccccatg
gagaaaggactcactttgccccaggactgccgggactttgtgcacagcctgaagatgaga
agcaaatacgcccttttcttggtttttgtggtgatagtttttgtcttcatcgaaaaggaa
aataaaatcatatcaagggtctcagacaagctgaagcagattccccaagctctagcagat
gccaacagcaccgacccagccctgatcttagctgagaacgcatctctcttgtccctgagc
gagctcgattcagccttctcccagcttcagagccgtctccgcaacctcagcttgcagctg
ggcgtggagccagccatggaggccgcaggggaggaagaggaagagcagagaaaggaggag
gagccgcccagaccggccgtggcggggccccggcgccacgtgctgctcatggccaccacg
cgcaccggctcctcgttcgtgggcgagttcttcaaccagcagggcaacatcttctacctc
ttcgagccgctgtggcacatcgagcgcacagtgtccttcgagccggggggcgccaacgcc
gcgggctcggccctggtgtaccgcgacgtgctcaagcagctcttcctgtgcgacctgtac
gtgctggagcacttcatcacgccgctgcccgaggaccacctgactcagttcatgttccgc
cggggctccagccgctccctgtgcgaggaccccgtctgtacgcccttcgtcaagaaggtc
ttcgagaagtaccactgcaagaaccgccgctgcggccccctcaacgtgacgctggccgca
gaggcctgccgccgcaaggagcacatggccctcaaggcggtgcgcatccggcagctggag
ttcctgcagccgctggccgaggacccccgcctggacctgcgcgtcatccagctggtgcgc
gacccccgggccgtgctggcctcgcgcatggtggccttcgccggcaagtataagacctgg
aagaagtggctggacgacgagggccaggacggcctgagggaagaggaggtgcagcggctg
cggggcaactgcgagagcatccgcctgtccgcggagctggggctgcggcagcccgcctgg
ctgcggggccgctacatgctggtgcgctacgaggacgtggcacgcgggccgctgcagaag
gcccgcgagatgtaccgcttcgccggcatccccctgaccccgcaggtggaagactggatc
caaaagaacacgcaggcggcccacgacggcagcggcatctactccacgcagaagaactcc
tcggagcagttcgagaagtggcgcttcagcatgcccttcaagctggcccaggtggtgcag
gccgcctgcggccctgccatgcgcctcttcggctacaaactggcgcgggacgccgccgcc
ctcaccaaccgctcagtcagcctgctggaggagaggggcaccttctgggtcacgtag

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_2|173_aa
MPGRPGAAPAGHFPGRTVLASSLQSSSRPPLAIKAPFSGGCLCWALPTSTGSLQTLLAGT
RTQSLPAAEGPPLWTHEPAGWCTLALGSQLLPPPAHPGDGETEAHGEVLTQVQKQVLEES
PCLTFFCTSPVPTLPSTFNHDLLMKTQDFPPWALSQCGRHARSGYSPGQLNLQ

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_2|522_bp
atgccaggacggcctggagcagcacctgctggccacttccctggccgcacggtgctggca
tcctccctgcagtccagcagccgtcctccactggccataaaggcccctttctctggtggc
tgtttgtgttgggccctacccacctccacgggcagcctccagacactgctggcaggcacg
aggacacagtccctgcccgctgctgaagggccgcctttgtggacacatgaaccagccggc
tggtgcaccctggcccttggaagccagctgcttccccctcctgctcatccaggagatggg
gaaactgaggcccatggagaggtgctgacccaagttcagaagcaggtcctggaagaatct
ccatgtcttaccttcttctgtacttccccagtacccacgctcccatccacattcaaccat
gacttactgatgaaaacacaggattttccaccttgggcattatctcagtgcgggaggcat
gccaggagtggctacagccctgggcagctgaacttgcagtga

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_3|421_aa
MRAPGCGRLVLPLLLLAAAALAEGDAKGLKEGETPGNFMEDEQWLSSISQYSGKIKHWNR
FRDDDYIKSWEDNQQGDEALDTTKDPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQ
PTVKLHGNKDSICKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLAVRCEGPCPCP
TEQAATSTADGKPETCTGQDLADLGDRLRDWFQLLHENSKQNGSASSVAGPASGLDKSLG
ASCKDSIGWMFSKLDTSADLFLDQTELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEWC
FCFWREKPPCLAELERIQIQEAAKKKPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGL
ELTGTRTHGSPDCDDIVGFSGDFGSGVGWEDEEEKETEEAGEEAEEEEGEAGEADDGGYI
W

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_3|1266_bp
atgcgcgccccgggctgcgggcggctggtgctgccgctgctgctcctggccgcggcagcc
ctggccgaaggcgacgccaaggggctcaaggagggcgagacccccggcaatttcatggag
gacgagcaatggctgtcgtccatctcgcagtacagcggcaagatcaagcactggaaccgc
ttccgagacgatgactatatcaagagctgggaggacaatcagcaaggagatgaagccctg
gataccaccaaggacccctgccagaaggtgaagtgcagccgccacaaggtgtgcattgcc
cagggctaccagcgggccatgtgcatcagtcgcaagaagctggagcacaggatcaagcag
ccgaccgtgaaactccatggaaacaaagactccatctgcaagccctgccacatggcccag
cttgcctctgtctgcggctcagatggccacacttacagctctgtgtgtaagctggagcaa
caggcgtgcctgagcagcaagcagctggcggtgcgatgcgagggcccctgcccctgcccc
acggagcaggctgccacctccaccgccgatggcaaaccagagacttgcaccggtcaggac
ctggctgacctgggagatcggctgcgggactggttccagctccttcatgagaactccaag
cagaatggctcagccagcagtgtagccggcccggccagcgggctggacaagagcctgggg
gccagctgcaaggactccattggctggatgttctccaagctggacaccagtgctgacctc
ttcctggaccagacggagctggccgccatcaacctggacaagtacgaggtctgcatccgt
cccttcttcaactcctgtgacacctacaaggatggccgggtctctactgctgagtggtgc
ttctgcttctggagggagaagcccccctgcctggcagagctggagcgcatccagatccag
gaggccgccaagaagaagccaggcatcttcatcccgagctgcgacgaggatggctactac
cggaagatgcagtgtgaccagagcagcggtgactgctggtgtgtggaccagctgggcctg
gagctgactggcacgcgcacgcatgggagccccgactgcgatgacatcgtgggcttctcg
ggggactttggaagcggtgtcggctgggaggatgaggaggagaaggagacggaggaagca
ggcgaggaggccgaggaggaggagggcgaggcaggcgaggctgacgacgggggctacatc
tggtag

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_4|441_aa
MRSQLTAASTSQAQVKRAFRGGARSETLKPDPVTELPLTPPAEEDDDEAAISSLAEFLLH
YRERKTAIGKFMEGIIGISFGESVMEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFY
QGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPK
PGQDGEIVITGQHRNGVISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEE
VLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKP
LEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKL
HATVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHI
SQRFTVDSFGNYASCGQIDFS

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_4|1326_bp
atgcgatcacagctcactgcagcctccacctcccaggctcaggtgaaaagggctttccgt
ggtggggcaaggtctgagacactgaaaccagatccagtgacagaacttccactgacccca
ccagctgaggaggatgatgatgaagcagccatttcctctctagcagagttcttacttcac
tacagagaaagaaaaacagcaattggcaagtttatggaaggcataattggaatatcattt
ggagaaagtgtcatggaagttctgcgtccacagcttataagaattgatggccggaattac
aggaagaatccagtccaagaacagacctatcaacatgaagaagatgaagaggacttctat
caaggctccatggagtgtgctgatgagccctgtgatgcctacgaggtggagcagacccca
caaggattccggtctactttgagggcccccagcttgctctataagcatatagttggaaag
agaggggacactaggaagaaaatagaaatggagaccaaaacttctattagcattcctaaa
cctggacaagacggggaaattgtaatcactggccagcatcgaaatggtgtaatttcagcc
cgaacacggattgatgttcttttggacacttttcgaagaaagcagcccttcactcacttc
cttgcctttttcctcaatgaagttgaggttcaggaaggattcctgagattccaggaggaa
gtactggcgaagtgctccatggatcatggggttgacagcagcattttccagaatcctaaa
aagcttcatctaactattgggatgttggtgcttttgagtgaggaagagatccagcagaca
tgtgagatgctacagcagtgtaaagaggaattcattaatgatatttctgggggtaaaccc
ctagaagtggagatggcagggatagaatacatgaatgatgatcctggcatggtggatgtt
ctttacgccaaagtccatatgaaagatggctccaacaggctacaagaattagttgatcga
gtgctggaacgttttcaggcatctggactaatagtgaaagagtggaatagtgtgaaactg
catgctacagttatgaatacactattcaggaaagaccccaatgctgaaggcaggtacaat
ctctacacagcggaaggcaaatatatcttcaaggaaagagaatcatttgatggccgaaat
attttaaagttgtttgagaacttctactttggctccctaaagctgaattcaattcacatc
tctcagaggttcaccgtagacagctttggaaactacgcttcctgtggacaaattgacttc
tcctga

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_5|79_aa
MDAVFNLKRFNLMLHPYGSERFLCESVFSYQVASTLKQVKHDQQVARMEKLAGLVEELEA
DEWRFKPIEQLLGFTPSSG

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_5|240_bp
atggatgctgtttttaatctcaaaaggttcaacttgatgttacatccttatggctctgag
agattcctctgcgaatctgtttttagctatcaagtggcatccacgcttaaacaggtgaaa
catgatcagcaagttgctcggatggaaaaactagctggtttggtagaagagctggaggct
gacgagtggcggtttaagcccatcgagcagctgctgggattcaccccctcttcaggttga

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_6|357_aa
MEAKRTWEWECRGDDKEPFLEKASLLLNMMMRDSAPHTKGKMPKKRSTHREQHVQSQELQ
GSHQKGANPAPCPHPAAGAPNAELSISVAWLPSSRAVGGASFLPRRLLRSGTLSSSANAL
ASVLTMPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCE
SLDSSNSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPA
RLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQL
TLVLRLDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_6|1074_bp
atggaagccaagaggacttgggagtgggaatgccgaggagatgacaaggagcctttccta
gagaaggcgagcctgctcttgaacatgatgatgagagacagcgcgccacacacaaaggga
aagatgccaaagaagcgttccacgcacagggaacagcatgtgcaaagtcaggaactccag
ggctctcaccagaaaggcgccaaccctgcgccctgcccccacccagccgccggggcccca
aatgctgagctcagcatctctgtggcctggctgccctcctcccgggcagtgggaggagcc
tccttcctcccgaggcggcttctacgctccggcactctgagttcatcagcaaacgccctg
gcgtctgtcctcaccatgcctagcctttgggaccgcttctcgtcgtcgtccacctcctct
tcgccctcgtccttgccccgaactcccaccccagatcggccgccgcgctcagcctggggg
tcggcgacccgggaggaggggtttgaccgctccacgagcctggagagctcggactgcgag
tccctggacagcagcaacagtggcttcgggccggaggaagacacggcttacctggatggg
gtgtcgttgcccgacttcgagctgctcagtgaccctgaggatgaacacttgtgtgccaac
ctgatgcagctgctgcaggagagcctggcccaggcgcggctgggctctcgacgccctgcg
cgcctgctgatgcctagccagttggtaagccaggtgggcaaagaactactgcgcctggcc
tacagcgagccgtgcggcctgcggggggcgctgctggacgtctgcgtggagcagggcaag
agctgccacagcgtgggccagctggcactcgaccccagcctggtgcccaccttccagctg
accctcgtgctgcgcctggactcacgactctggcccaagatccaggggctgtttagctcc
gccaactctcccttcctccctggcttcagccagtccctgacgctgagcactggcttccga
gtcatcaagaagaagctgtacagctcggaacagctgctcattgaggagtgttga

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_7|176_aa
MGSFMETSGAADAACGYVELAALNVESHSKYLNRQVLLHPLLQGDLVNQQVGEGDLLLPE
AVGAGARGHQGTDSRLSSYQPIGAGEAAGVGPVNRFANQHRVIPALPLVSVWSHDPNCPV
TVKPGTCVTIPKDRASFYSTGTWDDVPLQLQQVLMEPKHFPRQQRQSTNKYKDSGK

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_7|531_bp
atgggcagcttcatggaaacttctggggcagcagatgcagcctgtggctatgtggagctg
gcggctctgaatgtagagtcccactccaaatacctcaacaggcaagtcctgctgcaccca
ctcctacaaggtgacttggttaatcagcaggttggggagggggacctgctgctcccagag
gccgtaggtgctggagcacgaggacaccagggaactgactcaaggctctcctcttaccag
cccattggagcaggtgaggctgcaggtgtggggcctgtgaacagatttgccaatcaacac
agggttattcctgccttgcccctggtatctgtgtggtcacatgaccccaactgtccagtt
acagtgaaacccgggacatgtgtcacaattcccaaggacagagcctctttctactcaact
ggaacttgggatgatgtgcccctgcagctgcagcaggtgctcatggagcccaaacacttc
ccaagacagcaaaggcaaagtacaaacaagtacaaagactctgggaaatga

>gi568815588r:71997337_72313298|GENSCAN_predicted_peptide_8|171_aa
MAGCRSRALPRGEAAKARQEIERSGPALLGGPAVLEDRVHPPQPLARVLSPPLPEAAPNA
GPAEPTPTGNSRWPTSTARRPGCHRRLSLHTSLQAEGAGSGLGQPRKGLPQCSGRLKGSS
AAKVGAQAEEVPRASEGCEDCQHAVTSQNDSQCRASFSQRYTCGNNPCSYM

>gi568815588r:71997337_72313298|GENSCAN_predicted_CDS_8|516_bp
atggcgggatgcaggtcccgagccctgccccgcggggaggcagctaaggcccggcaagaa
atcgagcgcagtgggccggcactgctgggtgggccggcagtgctggaggaccgagtacac
cctccgcagccgctggcccgggtgctaagccccccattgcccgaggccgctcctaatgcg
gggcccgccgagcccacgcccaccgggaactcgcgctggcccacaagcaccgcgcgcaga
cccggttgccaccggcgcctctccctccacacctccctgcaagctgagggagccggctct
ggccttggccagcccagaaaggggctcccacagtgcagcggcaggctgaagggctcaagt
gccgccaaagtgggagcccaggcagaggaggtgccgagagcgagcgagggctgtgaggac
tgccagcatgctgtcacctctcagaatgactctcagtgtcgggcctcattctctcaacgt
tacacctgtgggaataatccatgcagttatatgtag