GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:39:49

Sequence gi568815597r:227821521_228025520 : 204000 bp : 50.26% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  23950  24092  143  2  2   93   53   240 0.352  21.07
 1.02 Intr +  24434  24675  242  1  2  118   65    77 0.070   4.75
 1.03 Term +  46866  46977  112  0  1   94   44    82 0.121   2.43
 1.04 PlyA +  47882  47887    6                               1.05

 2.00 Prom +  49571  49610   40                              -5.36
 2.01 Init +  51674  51825  152  1  2   78   98   102 0.540   9.71
 2.02 Intr +  53954  54276  323  2  2   25   40   146 0.279  -1.00
 2.03 Intr +  61595  61665   71  0  2  105   76    28 0.093   2.20
 2.04 Intr +  62379  62489  111  2  0   83   68    22 0.040   0.28
 2.05 Term +  65078  65227  150  1  0  102   48    36 0.037  -1.09
 2.06 PlyA +  66445  66450    6                               1.05

 3.00 Prom +  70026  70065   40                              -5.46
 3.01 Init +  74315  74411   97  1  1   91   92    61 0.695   5.28
 3.02 Intr +  74654  74726   73  0  1   86   76    74 0.658   4.46
 3.03 Term +  87362  87521  160  2  1   77   39    91 0.124   0.51
 3.04 PlyA +  87884  87889    6                               1.05

 4.11 PlyA -  89068  89063    6                               1.05
 4.10 Term -  92090  92053   38  0  2  105   49    56 0.145   0.90
 4.09 Intr -  93583  93469  115  1  1  103   40    86 0.148   5.32
 4.08 Intr -  94691  94527  165  2  0   85   60    38 0.097   0.86
 4.07 Intr - 100480 100070  411  1  0   89   96   463 0.049  41.58
 4.06 Intr - 102880 102609  272  2  2  102   23   412 0.573  33.36
 4.05 Intr - 103546 103445  102  2  0   96   37    60 0.721   1.85
 4.04 Intr - 103999 103743  257  0  2   81  105   571 0.998  55.19
 4.03 Intr - 115699 115603   97  2  1   84  106    48 0.022   5.27
 4.02 Intr - 122723 122563  161  1  2   45   76   101 0.041   4.23
 4.01 Init - 126367 126273   95  1  2   87   77   269 0.873  23.55
 4.00 Prom - 133975 133936   40                              -3.56

 5.00 Prom + 134501 134540   40                              -7.86
 5.01 Init + 136862 136916   55  1  1   51   94    66 0.340   4.95
 5.02 Intr + 145870 145927   58  2  1   88  101    49 0.911   4.14
 5.03 Intr + 147519 147633  115  0  1   42   98    40 0.562   0.85
 5.04 Intr + 149703 149807  105  2  0  106   71    36 0.858   4.11
 5.05 Intr + 151977 152081  105  2  0  105   71    -4 0.262   0.01
 5.06 Intr + 152140 152365  226  0  1   93   56    85 0.528   3.36
 5.07 Term + 152924 152976   53  0  2   68   43    66 0.806  -2.31
 5.08 PlyA + 153655 153660    6                              -0.45

 6.06 PlyA - 153693 153688    6                              -4.33
 6.05 Term - 154615 154482  134  2  2   93   47   114 0.971   6.05
 6.04 Intr - 155187 155029  159  1  0   78   13   115 0.802   2.96
 6.03 Intr - 155433 155310  124  0  1   65   14   126 0.871   3.06
 6.02 Intr - 156164 155907  258  2  0  -10   72   407 0.429  26.96
 6.01 Init - 156594 156415  180  0  0   66   75   129 0.864   8.58
 6.00 Prom - 171508 171469   40                              -3.66

 7.06 PlyA - 174057 174052    6                               1.05
 7.05 Term - 179128 179058   71  2  2   86   45    72 0.813   0.80
 7.04 Intr - 180687 180553  135  1  0  105   71    58 0.573   6.34
 7.03 Intr - 181451 181388   64  2  1   92   74    50 0.852   2.29
 7.02 Intr - 182767 182715   53  2  2  113   90    36 0.783   4.93
 7.01 Init - 183549 183519   31  0  1   79   99    26 0.445   1.75
 7.00 Prom - 189337 189298   40                              -1.56

 8.00 Prom + 195073 195112   40                              -7.26
 8.01 Init + 197162 197238   77  1  2  114   55     6 0.331   0.46
 8.02 Intr + 201147 201388  242  0  2  136   86   493 0.768  51.09

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  24434  24688  255  1  0  118   51    82 0.834   3.09
S.002 Term - 100480  99998  483  1  0   89   44   545 0.908  44.95


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_1|165_aa
XETSDELQEMQLPLILEPWCHLLYGHMSYIMPDMLCAGDILNAKTVCEGDSGGPLVCEFN
RSWLQIGIVSWGRGCSNPLYPGVYASVSYFSKWICDNIEITPTPAQPAPALSPALGPTLS
VLMAMLAGWWNERLGKEKDTETKYRERNKGTQGTSVQHMEDPASL

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_1|498_bp
ngtgagacctcagacgagctgcaggagatgcagctcccgctgatcctggagccctggtgc
cacctgctctacggacacatgtcctacatcatgcccgacatgctgtgtgctggggacatc
ctgaatgctaagaccgtgtgtgagggcgactccgggggcccacttgtctgtgaattcaac
cgcagctggttgcagattggaattgtgagctggggccgaggctgctccaaccctctgtac
cctggagtgtatgccagtgtttcctatttctcaaaatggatatgtgataacatagaaatc
acgcccactcctgctcagccagcccctgctctctctccagctctggggcccactctcagc
gtcctaatggccatgctggctggctggtggaacgagaggcttggaaaagaaaaagacaca
gagacaaagtatagagaaagaaataagggcacccagggaaccagcgttcagcatatggag
gatcccgccagcctctga

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_2|268_aa
MKMRKNQHKKAENSKNQNASSPPKNHNSPPAREQNWTENEFDKLTEVGFRRIILITKPGR
DTTKKEIFRPISLMNIYVKILNKILASRIQQHIKKLIHHDQGGFIPGMQGWFNIHKSINI
IHHINKTNDKNQMIISIDAEKAFDEIQHPFMIKTLNKLACIHAPKTQGHGGLDALLARWL
QQLPVCPSLALAPTDPRTPIIWSVRLALLPGTSAHPHLQAYGAPLLSSRASQASQLLSGA
LASLQVSHPIKEITAELSRTPGNSWVGR

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_2|807_bp
atgaagatgaggaaaaaccagcacaaaaaggctgaaaattccaaaaaccagaatgcctct
tctcctccaaagaatcataactccccaccagcaagggaacaaaactggacggagaatgag
tttgacaaattgacagaagtaggcttcagaagaatcatcctgataacaaaacctggcaga
gacacaacaaaaaaagaaattttcaggccaatatccctgatgaacatctatgtgaaaatc
ctcaataaaatactggcaagccgaatccagcagcacatcaaaaagcttatccaccacgat
caaggcggcttcatccctgggatgcaaggctggttcaacatacacaaatcaataaacata
atccatcacataaacaaaacgaatgacaaaaaccaaatgattatttcaatagatgcagaa
aaggcctttgatgaaattcaacaccccttcatgataaaaactctcaataaactagcatgc
atccatgcaccgaaaacacaaggccatgggggcttggatgcacttctggccaggtggctg
cagcagctccctgtgtgcccatccctagctctggccccgacggacccccggacccccatc
atctggagtgtccgcctggccctacttccagggacctctgcccacccccacctgcaggcc
tatggtgctcccctcctgagcagcagagccagccaagcttctcagctcctaagtggggct
cttgcgtctttacaagtctcccaccccataaaagagatcaccgcggagctgtccagaacc
cctggaaacagctgggtcggacggtga

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_3|109_aa
MSQAAPGARHPRPGLLGLCSLQFPAPFPGGALGPQEHGLGCQVALEEHKELFVFRLGSSS
RSVLLLHGSPEADLATHRLANDLEGPVHLPSSSFIMLTVSPLVHSLFHR

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_3|330_bp
atgagccaggcagcacccggggcccggcaccccaggcctggactcctgggcctctgctcg
ctccagtttccggcacctttcccaggaggggctctgggaccccaggagcatggcctgggc
tgccaggtggccttggaagagcacaaagagctgtttgtcttcaggctcggctcctcctca
cggtctgtgctgctcctgcacggctccccagaagctgatctggccacacacaggctggcc
aatgacctcgaaggcccagtccacctgccgagttcttccttcatcatgctcaccgtcagt
cccctcgtccacagcctcttccaccgttag

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_4|570_aa
MLDGSPLARWLAAAFGLTLLLAALRPSAAYFGITVVARVSIAFFLMTELDSTGRLSERFF
DRSSVDGHLDHFHCLAMMDNVAVSIGRKTLGDGCKARETTKTDPASLEKPNRARGGEKLT
GSEPLTILPLTLEPEAAAQAHYKACDRLKLERKQRRMCRRDPGVAETLVEAVSMSALECQ
FQFRFERWNCTLEGRYRASLLKRGTRTVVAGGQGMLTRPLTGPQATRGCPDSPRLMPGFK
ETAFLYAISSAGLTHALAKACSAGRMERCTCDEAPDLENREAWQWGGCGDNLKYSSKFVK
EFLGRRSSKDLRARVDFHNNLVGVKASGVIKAGVETTCKCHGVSGSCTVRTCWRQLAPFH
EVGKHLKHKYETALKVGSTTNEAAGEAGAISPPRGRASGAGGSDPLPRTPELVHLDDSPS
FCLAGRFSPGTAGRRCHREKNCESICCGRGHNTQSRVVTRPCQCQLTSSHWPWAHPVQRH
PPGGWRHLGIHEVLPHLLEHGSDAPEQFPDNRASPSWLAGPLCSSEAPPCPLPSAYSNWL
AQEERMLGRAVTSLEVTLALQLEDREDKGV

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_4|1713_bp
atgctggatgggtccccgctggcgcgctggctggccgcggccttcgggctgacgctgctg
ctcgccgcgctgcgcccttcggccgcctacttcggcatcaccgttgtagcacgcgttagt
attgccttctttcttatgactgagttagactcgactggaagactctccgagagatttttt
gaccgttcatcagttgacggacatctggatcacttccactgtttggctatgatggataat
gttgctgtgagcattggaaggaagacacttggggatggctgcaaggctcgggaaaccaca
aagactgacccagcaagtttggaaaaaccaaatagagctagagggggagaaaagctgacg
ggcagcgagcccctgaccatcctcccgctgaccctggagccagaggcggctgcccaggcg
cactacaaggcctgcgaccggctgaagctggagcggaagcagcggcgcatgtgccgccgg
gacccgggcgtggcagagacgctggtggaggccgtgagcatgagtgcgctcgagtgccag
ttccagttccgctttgagcgctggaactgcacgctggagggccgctaccgggccagcctg
ctcaagcgaggcacacgcacagtcgttgctggtggccagggcatgctgactcggcctttg
acggggccccaggctacccggggctgccccgacagccctcggctcatgccaggcttcaag
gagactgccttcctctatgccatctcctcggctggcctgacgcacgcactggccaaggcg
tgcagcgcgggccgcatggagcgctgtacctgcgatgaggcacccgacctggagaaccgt
gaggcctggcagtgggggggctgcggagacaaccttaagtacagcagcaagttcgtcaag
gaattcctgggcagacggtcaagcaaggatctgcgagcccgtgtggacttccacaacaac
ctcgtgggtgtgaaggcaagtggggtgatcaaggctggggtggagaccacctgcaagtgc
cacggcgtgtcaggctcatgcacggtgcggacctgctggcggcagttggcgcctttccat
gaggtgggcaagcatctgaagcacaagtatgagacggcactcaaggtgggcagcaccacc
aatgaagctgccggcgaggcaggtgccatctccccaccacggggccgtgcctcgggggca
ggtggcagcgacccgctgccccgcactccagagctggtgcacctggatgactcgcctagc
ttctgcctggctggccgcttctccccgggcaccgctggccgtaggtgccaccgtgagaag
aactgcgagagcatctgctgtggccgcggccataacacacagagccgggtggtgacaagg
ccctgccagtgccagctgacaagctcccactggccctgggcccaccctgtccaacgacat
ccaccaggtgggtggagacaccttggaatccacgaggtgcttcctcacctgctcgagcac
gggtcagatgctcctgagcagtttccggacaacagggcatccccatcttggcttgcgggg
cctctgtgctcctcggaagcccctccctgcccactgcccagtgcatacagcaactggctg
gcccaggaggagcggatgctgggcagagctgtcacctccctggaggtgaccttggccttg
cagcttgaagaccgggaggacaaaggcgtttag

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_5|238_aa
MVEDEDTKHEAGQPRGEAGGTIQLQENKLNTPTDSTLWMSSSSQCVYRPVSCLTTTSFGP
TPAELLAASVGHRILKARLLPLNNLFGLSAYPSPGGLGRPTASSSQAPQAQARLWPPNNV
FGLSSCPAPSGPGRPTTSRSQVPQAQAPNGLRSVGSSRPSLGLLAASAGPNRPEVGLSRP
SLGLPAASAGPSHPQIGLELGLEEQQVGLPGPNSVLSAASPGLMTVMATFWHNEKYRP

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_5|717_bp
atggtggaagatgaggacaccaagcatgaagctggccagccccgtggggaggcaggtggg
accatccagttgcaggaaaacaagcttaacacgcccactgattctacattatggatgagc
tcatcctcccagtgcgtctacaggcccgtctcctgcctcacaacaacctcctttggccca
actcctgctgagctgctggcagcctctgtaggccacagaattcttaaggcccgactcctg
cctctcaacaacctttttggactcagtgcctacccatctcctggcggccttggtcggccc
acagcttcctcaagccaagctccccaggcccaggcccgactctggcctcccaacaacgtc
tttggactcagctcctgcccagctcccagtggccctggtaggcccacaacttcccgaagc
caagttccccaggcccaggccccaaacggcctccggtcggtgggctcctctaggcccagc
ttgggcctcctggcggcctctgcaggcccaaatcgtcccgaagtcggcctctccaggccc
agcttgggcctcccggcggcctctgcaggcccaagtcatcctcaaatcggcctggaattg
ggcctggaagagcagcaagtcggcctccccgggcccaactccgtcctctcggcggcctct
ccaggtttaatgacggtcatggcaactttttggcacaatgaaaaatatcgcccatga

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_6|284_aa
MFVWRNVEGHSVAVFPWYSIPFLTPPCSHMRPSKLPVTQWPPTRENNLPSWQLLLMSVHQ
AQSLSALRKEQDSSSEKDGRSPNKWDKDHIWWPMSGSHNLQQAAPGPGRAHQGHPNQDNR
TISQMLSEQWYTLGPNEMQKYDLAFQHMASEDIASDEEHTVIHEEEGVMMSLLMMALAPL
TLISSSRNPEPPGSPDPPAAFGKVYGPTLSSSYTYSDASSSTLAPTSFLLGPGAFKAQES
GGEAEDRLREPETEKALSSSLHAPRTSAGPDHAALPGPLLLPVH

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_6|855_bp
atgttcgtgtggaggaatgtggaaggtcactctgtggccgtgttcccctggtactccatc
cccttcctgacccctccctgcagccacatgaggcccagcaaactgccagtcactcagtgg
cctccaaccagagaaaacaacctgccaagttggcagctgttgctcatgagcgtccaccag
gcccagtccctcagtgccctgcgcaaggaacaggactcatcttctgagaaggatggacgc
agccccaacaaatgggacaaggaccacatctggtggcccatgagtggcagtcataatctt
cagcaagcagcaccaggccctggcagggcgcaccagggtcaccccaaccaggataaccgg
accatcagccagatgctgagcgagcaatggtacaccctggggcccaatgagatgcagaaa
tacgacctggccttccagcacatggccagtgaggacatagcgagtgacgaggagcacacg
gtcatccatgaggaggagggggtgatgatgtcattgctgatgatggctttagcaccactg
acactgatctcaagttcaaggaatcctgagcccccagggtcccccgatccacctgcagct
tttggcaaagtctatggtcccaccctgtcctcctcctacacatactcggatgcttcctcc
tcaaccttggcacccacctccttcttactgggcccaggagccttcaaagcccaggagtct
ggtggagaagctgaggacaggctcagggaaccggagaccgagaaggcgctgtcctcttca
ctgcacgcgccccggaccagtgccggccctgatcatgcagctcttccaggcccactgctt
cttcctgtccactag

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_7|117_aa
MGLVTSLKGADLLVGQDTDPHSNTWNGEPLNMKATRMKTFMRTHCRLMNSPLYIPCLSLR
PVSTFVGIVQLRHCGNYLLRVNITMRAPVDITDVGMSVDSKPFACCATNATFEKADA

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_7|354_bp
atgggcctcgtgacctcactgaagggggcagacctccttgttggccaggacacagaccca
cattccaacacttggaacggggagccactcaatatgaaggccactaggatgaagaccttt
atgaggacccactgccgcctcatgaactcccctctctacattccttgtctgtccctccgc
cccgtctccacctttgttggcattgttcagctcaggcactgtgggaattacctcctccgc
gttaatatcaccatgagagcccccgtggacattactgatgtgggaatgtctgttgactca
aagcccttcgcatgctgtgctacgaacgccacctttgagaaggctgacgcatga

>gi568815597r:227821521_228025520|GENSCAN_predicted_peptide_8|107_aa
MPSLIFDFLFNDPTDPSRPSQNLVAQSLAVGPQYSSLGSQPILCASIPGLVPKQLRFCRN
YVEIMPSVAEGIKIGIQECQHQFRGRRWNCTTVHDSLAIFGPVLDKX

>gi568815597r:227821521_228025520|GENSCAN_predicted_CDS_8|321_bp
atgcccagccttatatttgattttctttttaatgacccaactgatccttcaaggcccagc
caaaatctggtggcccagtcgctggctgttgggccacagtattcctccctgggctcgcag
cccatcctgtgtgccagcatcccgggcctggtccccaagcagctccgcttctgcaggaac
tacgtggagatcatgcccagcgtggccgagggcatcaagattggcatccaggagtgccag
caccagttccgcggccgccggtggaactgcaccaccgtccacgacagcctggccatcttc
gggcccgtgctggacaaagnn