FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1756, 261 aa
  1>>>pF1KE1756     261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2927+/-0.000898; mu= 9.6007+/- 0.054
 mean_var=71.0243+/-14.459, 0's: 0 Z-trim(105.6): 19  B-trim: 0 in 0/52
 Lambda= 0.152185
 statistics sampled from 8626 (8640) to 8626 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.259), width:  16
 Scan time:  1.030

The best scores are:                                      opt bits E(33420)
CCDS14659.1 CD40LG gene_id:959|Hs109|chrX          ( 261) 1690 380.1 8.7e-106


>>CCDS14659.1 CD40LG gene_id:959|Hs109|chrX               (261 aa)
 initn: 1690 init1: 1690 opt: 1690  Z-score: 2012.9  bits: 380.1 E(33420): 8.7e-106
Smith-Waterman score: 1690; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KE1 MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MIETYNQTSPRSAATGLPISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 EDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 REASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REASSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVN
              190       200       210       220       230       240

              250       260 
pF1KE1 VTDPSQVSHGTGFTSFGLLKL
       :::::::::::::::::::::
CCDS14 VTDPSQVSHGTGFTSFGLLKL
              250       260 




261 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jul  3 20:34:20 2020 done: Fri Jul  3 20:34:20 2020
 Total Scan time:  1.030 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]