Result of FASTA (ccds) for pF1KE6772
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6772, 613 aa
  1>>>pF1KE6772     613 - 613 aa - 613 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8086+/-0.00084; mu= 16.9124+/- 0.051
 mean_var=76.1461+/-15.374, 0's: 0 Z-trim(106.9): 17  B-trim: 10 in 1/53
 Lambda= 0.146977
 statistics sampled from 9377 (9392) to 9377 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.281), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(33420)
CCDS14618.1 AIFM1 gene_id:9131|Hs109|chrX          ( 613) 4029 864.0       0
CCDS14619.1 AIFM1 gene_id:9131|Hs109|chrX          ( 609) 3788 812.9       0
CCDS48167.1 AIFM1 gene_id:9131|Hs109|chrX          ( 324) 2110 457.0 1.8e-128
CCDS48166.2 AIFM1 gene_id:9131|Hs109|chrX          ( 274) 1811 393.5 1.9e-109
CCDS33605.1 AIFM3 gene_id:150209|Hs109|chr22       ( 598)  285 70.1 9.6e-12
CCDS54503.1 AIFM3 gene_id:150209|Hs109|chr22       ( 604)  285 70.1 9.6e-12
CCDS13786.1 AIFM3 gene_id:150209|Hs109|chr22       ( 605)  285 70.1 9.7e-12


>>CCDS14618.1 AIFM1 gene_id:9131|Hs109|chrX               (613 aa)
 initn: 4029 init1: 4029 opt: 4029  Z-score: 4614.9  bits: 864.0 E(33420):    0
Smith-Waterman score: 4029; 100.0% identity (100.0% similar) in 613 aa overlap (1-613:1-613)

               10        20        30        40        50        60
pF1KE6 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE6 ITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHED
              550       560       570       580       590       600

              610   
pF1KE6 LNEVAKLFNIHED
       :::::::::::::
CCDS14 LNEVAKLFNIHED
              610   

>>CCDS14619.1 AIFM1 gene_id:9131|Hs109|chrX               (609 aa)
 initn: 3713 init1: 3487 opt: 3788  Z-score: 4338.8  bits: 812.9 E(33420):    0
Smith-Waterman score: 3788; 95.1% identity (97.1% similar) in 614 aa overlap (1-613:1-609)

               10        20        30        40        50        60
pF1KE6 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
       :::::::::::::::::::::::::::::::::::  . :  :.    . .:..::.:::
CCDS14 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLP--VVQSHHLG---SPSRSLASTGAS
               10        20        30          40           50     

               70        80         90       100       110         
pF1KE6 GGKIDNSVLVLIVGLSTVGAGAY-AYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASE
       :   .: :  :::: ...:::.: ::::::::::::::::::::::::::::::::::::
CCDS14 GKDGSNLVYFLIVGATVTGAGVYYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASE
          60        70        80        90       100       110     

     120       130       140       150       160       170         
pF1KE6 GEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL
         120       130       140       150       160       170     

     180       190       200       210       220       230         
pF1KE6 WFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 WFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVR
         180       190       200       210       220       230     

     240       250       260       270       280       290         
pF1KE6 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE
         240       250       260       270       280       290     

     300       310       320       330       340       350         
pF1KE6 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE
         300       310       320       330       340       350     

     360       370       380       390       400       410         
pF1KE6 GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFG
         360       370       380       390       400       410     

     420       430       440       450       460       470         
pF1KE6 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GFRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQ
         420       430       440       450       460       470     

     480       490       500       510       520       530         
pF1KE6 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEAS
         480       490       500       510       520       530     

     540       550       560       570       580       590         
pF1KE6 EITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHE
         540       550       560       570       580       590     

     600       610   
pF1KE6 DLNEVAKLFNIHED
       ::::::::::::::
CCDS14 DLNEVAKLFNIHED
         600         

>>CCDS48167.1 AIFM1 gene_id:9131|Hs109|chrX               (324 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 2420.0  bits: 457.0 E(33420): 1.8e-128
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322)

               10        20        30        40        50        60
pF1KE6 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MFRCGGLAAGALKQKLVPLVRTVCVRSPRQRNRLPGNLFQRWHVPLELQMTRQMASSGAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKKAALSASEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 NMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG
       ::::::::::::::::::::::                                      
CCDS48 KSITIIGGGFLGSELACALGRKDI                                    
              310       320                                        

>>CCDS48166.2 AIFM1 gene_id:9131|Hs109|chrX               (274 aa)
 initn: 1811 init1: 1811 opt: 1811  Z-score: 2078.5  bits: 393.5 E(33420): 1.9e-109
Smith-Waterman score: 1811; 100.0% identity (100.0% similar) in 274 aa overlap (340-613:1-274)

     310       320       330       340       350       360         
pF1KE6 FLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV
                                     ::::::::::::::::::::::::::::::
CCDS48                               MGKILPEYLSNWTMEKVRREGVKVMPNAIV
                                             10        20        30

     370       380       390       400       410       420         
pF1KE6 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA
               40        50        60        70        80        90

     430       440       450       460       470       480         
pF1KE6 RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLGPD
              100       110       120       130       140       150

     490       500       510       520       530       540         
pF1KE6 VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPA
              160       170       180       190       200       210

     550       560       570       580       590       600         
pF1KE6 VPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNEVAKLFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 VPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIFNRMPIARKIIKDGEQHEDLNEVAKLFN
              220       230       240       250       260       270

     610   
pF1KE6 IHED
       ::::
CCDS48 IHED
           

>>CCDS33605.1 AIFM3 gene_id:150209|Hs109|chr22            (598 aa)
 initn: 234 init1: 127 opt: 285  Z-score: 324.6  bits: 70.1 E(33420): 9.6e-12
Smith-Waterman score: 396; 26.7% identity (57.0% similar) in 419 aa overlap (83-496:152-528)

             60        70        80        90       100       110  
pF1KE6 QMASSGASGGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKK
                                     . ...  : :: :  : :  .:  ... : 
CCDS33 SRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYV-RASKQALQLQRRTKV
             130       140       150       160        170       180

            120       130       140       150       160       170  
pF1KE6 AALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR
        :   :     :.    : .  :..:.:.:... :...: .  . :... . : .::: :
CCDS33 MAKCIS-----PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDR
                   190       200       210       220       230     

            180       190       200       210       220       230  
pF1KE6 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKK
       : ::: :                 . . ... ..:  :. .          :. :::  .
CCDS33 PKLSKSL-----------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQ
         240                        250       260                  

            240       250       260       270       280       290  
pF1KE6 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS
       :: .::: . : ..:: .. : : :.: :..:..::     : ::..  :. :   :   
CCDS33 VVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANR
     270       280       290       300          310        320     

            300       310       320       330       340       350  
pF1KE6 LEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT
       . ...:  ......:.:::: :.:  : .::....  :..:  :.  . ..: : ..   
CCDS33 VVRLARG-RNVVVVGAGFLGMEVAAYLTEKAHSVS--VVEL--EETPFRRFLGERVGRAL
         330        340       350         360         370       380

            360       370       380        390       400       410 
pF1KE6 MEKVRREGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGG
       :.  . . :: . .. :. .  . :::  . ::... :..:  :...:  : . . . .:
CCDS33 MKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSG
              390       400       410       420       430       440

             420       430        440       450         460        
pF1KE6 LEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGEN
       . .::  : . ::  .:.   ....::::. :     . :.:.  : . : ..::.:..:
CCDS33 IGLDSR-GFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQN
               450       460       470       480       490         

      470       480        490       500       510       520       
pF1KE6 MTGAAKPYWHQSMFWSDL-GPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTG
       : .    .    ..:. . : .. : . :                               
CCDS33 MLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVA
     500       510       520       530       540       550         

>>CCDS54503.1 AIFM3 gene_id:150209|Hs109|chr22            (604 aa)
 initn: 234 init1: 127 opt: 285  Z-score: 324.5  bits: 70.1 E(33420): 9.6e-12
Smith-Waterman score: 396; 26.7% identity (57.0% similar) in 419 aa overlap (83-496:158-534)

             60        70        80        90       100       110  
pF1KE6 QMASSGASGGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKK
                                     . ...  : :: :  : :  .:  ... : 
CCDS54 SRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYV-RASKQALQLQRRTKV
       130       140       150       160       170        180      

            120       130       140       150       160       170  
pF1KE6 AALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR
        :   :     :.    : .  :..:.:.:... :...: .  . :... . : .::: :
CCDS54 MAKCIS-----PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDR
        190            200       210       220       230       240 

            180       190       200       210       220       230  
pF1KE6 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKK
       : ::: :                 . . ... ..:  :. .          :. :::  .
CCDS54 PKLSKSL-----------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQ
                              250       260                270     

            240       250       260       270       280       290  
pF1KE6 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS
       :: .::: . : ..:: .. : : :.: :..:..::     : ::..  :. :   :   
CCDS54 VVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANR
         280       290       300       310          320        330 

            300       310       320       330       340       350  
pF1KE6 LEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT
       . ...:  ......:.:::: :.:  : .::....  :..:  :.  . ..: : ..   
CCDS54 VVRLARG-RNVVVVGAGFLGMEVAAYLTEKAHSVS--VVEL--EETPFRRFLGERVGRAL
              340       350       360           370       380      

            360       370       380        390       400       410 
pF1KE6 MEKVRREGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGG
       :.  . . :: . .. :. .  . :::  . ::... :..:  :...:  : . . . .:
CCDS54 MKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSG
        390       400       410       420       430       440      

             420       430        440       450         460        
pF1KE6 LEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGEN
       . .::  : . ::  .:.   ....::::. :     . :.:.  : . : ..::.:..:
CCDS54 IGLDSR-GFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQN
        450        460       470       480       490       500     

      470       480        490       500       510       520       
pF1KE6 MTGAAKPYWHQSMFWSDL-GPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTG
       : .    .    ..:. . : .. : . :                               
CCDS54 MLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVA
         510       520       530       540       550       560     

>>CCDS13786.1 AIFM3 gene_id:150209|Hs109|chr22            (605 aa)
 initn: 234 init1: 127 opt: 285  Z-score: 324.5  bits: 70.1 E(33420): 9.7e-12
Smith-Waterman score: 396; 26.7% identity (57.0% similar) in 419 aa overlap (83-496:152-528)

             60        70        80        90       100       110  
pF1KE6 QMASSGASGGKIDNSVLVLIVGLSTVGAGAYAYKTMKEDEKRYNERISGLGLTPEQKQKK
                                     . ...  : :: :  : :  .:  ... : 
CCDS13 SRGRVRCPWHGACFNISTGDLEDFPGLDSLHKFQVKIEKEKVYV-RASKQALQLQRRTKV
             130       140       150       160        170       180

            120       130       140       150       160       170  
pF1KE6 AALSASEGEEVPQDKAPSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR
        :   :     :.    : .  :..:.:.:... :...: .  . :... . : .::: :
CCDS13 MAKCIS-----PSAGYSSSTNVLIVGAGAAGLVCAETLRQEGFSDRIVLCTLDRHLPYDR
                   190       200       210       220       230     

            180       190       200       210       220       230  
pF1KE6 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKK
       : ::: :                 . . ... ..:  :. .          :. :::  .
CCDS13 PKLSKSL-----------------DTQPEQLALRPKEFFRAY---------GIEVLTEAQ
         240                        250       260                  

            240       250       260       270       280       290  
pF1KE6 VVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRS
       :: .::: . : ..:: .. : : :.: :..:..::     : ::..  :. :   :   
CCDS13 VVTVDVRTKKVVFKDGFKLEYSKLLLAPGSSPKTLSC---KGKEVENVFTI-RTPEDANR
     270       280       290       300          310        320     

            300       310       320       330       340       350  
pF1KE6 LEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWT
       . ...:  ......:.:::: :.:  : .::....  :..:  :.  . ..: : ..   
CCDS13 VVRLARG-RNVVVVGAGFLGMEVAAYLTEKAHSVS--VVEL--EETPFRRFLGERVGRAL
         330        340       350         360         370       380

            360       370       380        390       400       410 
pF1KE6 MEKVRREGVKVMPNAIVQSVGVSSGKLL-IKLKDGRKVETDHIVAAVGLEPNVELAKTGG
       :.  . . :: . .. :. .  . :::  . ::... :..:  :...:  : . . . .:
CCDS13 MKMFENNRVKFYMQTEVSELRGQEGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSG
              390       400       410       420       430       440

             420       430        440       450         460        
pF1KE6 LEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVE--HHDHAVVSGRLAGEN
       . .::  : . ::  .:.   ....::::. :     . :.:.  : . : ..::.:..:
CCDS13 IGLDSR-GFIPVNKMMQTNVPGVFAAGDAVTFPLAWRNNRKVNIPHWQMAHAQGRVAAQN
               450       460       470       480       490         

      470       480        490       500       510       520       
pF1KE6 MTGAAKPYWHQSMFWSDL-GPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTG
       : .    .    ..:. . : .. : . :                               
CCDS13 MLAQEAEMSTVPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEELKFVAFYTKGDEVIAVA
     500       510       520       530       540       550         




613 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 24 16:38:45 2018 done: Tue Jul 24 16:38:45 2018
 Total Scan time:  1.600 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com