GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:53:34

Sequence gi568815575r:3512203_3813253 : 301051 bp : 44.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -    388    260  129  1  0  113  105     9 0.321   5.99
 1.03 Intr -   1039    943   97  0  1   53   89    37 0.274   0.31
 1.02 Intr -   6958   6878   81  0  0   94   81    79 0.465   6.55
 1.01 Init -   8203   8115   89  1  2   80   94    42 0.482   4.12
 1.00 Prom -   8896   8857   40                              -9.95

 2.00 Prom +   9461   9500   40                              -6.26
 2.01 Init +  11018  11047   30  1  0   69   85    51 0.967   0.80
 2.02 Term +  12159  12779  621  2  0   20   32  1980 0.992 180.02
 2.03 PlyA +  13345  13350    6                               1.05

 3.03 PlyA -  14675  14670    6                               1.05
 3.02 Term -  24307  24237   71  2  2   94   48    56 0.004   0.30
 3.01 Init -  44151  44115   37  0  1   96  115    44 0.739   8.08
 3.00 Prom -  44739  44700   40                              -1.36

 4.00 Prom +  46020  46059   40                              -2.46
 4.01 Init +  69976  70134  159  0  0   66   96    69 0.695   5.32
 4.02 Intr +  70480  70598  119  0  2   76  103    23 0.680   1.86
 4.03 Term +  85741  86029  289  1  1   64   54   118 0.041   0.85
 4.04 PlyA +  86996  87001    6                               1.05

 5.09 PlyA -  90202  90197    6                               1.05
 5.08 Term - 100123  99998  126  1  0   55   55   185 0.966  10.18
 5.07 Intr - 103690 103613   78  1  0   75   82    80 0.956   5.85
 5.06 Intr - 109114 109057   58  0  1   68   86    60 0.832   2.69
 5.05 Intr - 114312 114217   96  2  0  114  106    63 0.951   9.82
 5.04 Intr - 129769 129650  120  0  0   74   98   115 0.337  10.71
 5.03 Intr - 143210 142947  264  1  0  135  110   522 0.996  55.73
 5.02 Intr - 162564 162396  169  1  1  147   68   260 0.892  28.90
 5.01 Init - 164736 164727   10  0  1   80   93     5 0.467   1.00
 5.00 Prom - 167632 167593   40                              -0.06

 6.05 PlyA - 169461 169456    6                              -0.45
 6.04 Term - 170737 170694   44  2  2  141   43    26 0.044   0.72
 6.03 Intr - 193292 193173  120  0  0  101   90    11 0.143   3.07
 6.02 Intr - 201123 200886  238  0  1   44   92   334 0.624  26.59
 6.01 Init - 201373 201242  132  1  0   63   52   223 0.995  14.34
 6.00 Prom - 201812 201773   40                             -13.33

 7.00 Prom + 202339 202378   40                              -6.06
 7.01 Init + 202517 202629  113  1  2   64    0   167 0.810   3.77
 7.02 Intr + 204907 205323  417  1  0   30  107   344 0.388  23.64
 7.03 Intr + 239283 239326   44  0  2  114   87    52 0.231   5.58
 7.04 Term + 248812 248864   53  2  2  114   39    53 0.448   0.59
 7.05 PlyA + 248907 248912    6                               1.05

 8.02 PlyA - 251082 251077    6                               1.05
 8.01 Sngl - 254206 253802  405  1  0   78   38   164 0.588   6.68
 8.00 Prom - 268527 268488   40                              -3.36

 9.00 Prom + 272023 272062   40                              -4.46
 9.01 Init + 280335 280498  164  2  2   73   52   152 0.899   9.30
 9.02 Term + 281305 281443  139  1  1   42   40   104 0.774  -1.56
 9.03 PlyA + 281476 281481    6                               1.05

10.04 PlyA - 282499 282494    6                               1.05
10.03 Term - 289538 289408  131  0  2   96   48   129 0.994   8.04
10.02 Intr - 294524 294444   81  0  0   96   64    24 0.095   0.41
10.01 Intr - 296615 296395  221  1  2   73   21   132 0.090   2.95

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 118786 118726   61  1  1   73  103    55 0.925   6.91
S.002 Term - 140672 140530  143  0  2  113   45    60 0.864   2.29
S.003 Intr - 141166 141027  140  0  2   42   50    82 0.826  -0.09


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_1|132_aa
MVRDGAQREFREAGLEDRSDDDGAARSWRRQALSFQNPAFARAVPQNGKALTNDRVKIPS
AQGASEQSNAYDPREALPSHGRSHPLELMGLLMYIGNNNLYITEIWGDRLEMIYVKTGVP
TWPVRNWAAQQE

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_1|396_bp
atggtgcgagatggagcacagagagaattcagagaggctggccttgaggatcggagtgat
gacgatggagccgccagaagctggaggaggcaagccctgtccttccagaaccccgccttt
gccagggctgtgcctcagaacgggaaggctctgaccaatgacagagtgaaaattccatcc
gcccagggtgcttctgagcaaagcaatgcttatgaccccagagaagcccttccttcccat
ggacgctcccaccctttggagctcatgggtcttttgatgtacattgggaacaataatctt
tatattacagagatttggggagacagattagaaatgatatatgttaaaacaggggtcccc
acgtggcccgttaggaactgggccgcacagcaggag

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_2|216_aa
MAPRVFSLSLKQIYLSLEAYITIIIITFTIIITITITIIMTIITNTIITITITTITITIT
TITITTTITITITTITTITITTITTTITITITTTTITTTTITITTTTITTTTITTTTITI
TIITTTITTITITITTITITTTTTITITTTTIIITITTITITITTITITTTITITTITIT
ITTITVTIMVITIIMTIITNTIITITITITIAIIII

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_2|651_bp
atggctccccgggtctttagcctttccctgaaacaaatttatctctcattggaagcttat
atcaccatcatcatcatcaccttcaccatcatcatcaccatcaccatcaccatcatcatg
actatcatcaccaacaccatcatcaccatcaccatcaccaccatcaccatcaccatcacc
accatcaccatcaccaccaccatcaccatcaccatcaccaccatcaccaccatcaccatc
accaccatcaccaccaccatcaccatcactatcaccactaccaccatcaccaccaccacc
atcaccatcaccaccaccaccatcaccaccaccaccatcaccaccaccaccatcaccatc
accatcatcaccaccaccatcaccaccatcaccatcaccatcaccaccatcaccatcacc
accaccaccaccatcaccatcaccaccaccaccatcatcatcaccatcaccaccatcacc
atcaccatcaccaccatcaccatcaccaccaccatcaccatcaccaccatcaccatcacc
atcaccaccatcaccgtcaccatcatggtcatcaccatcatcatgactatcatcaccaac
accatcatcaccatcaccatcaccatcaccatcgccatcatcatcatctaa

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_3|35_aa
MDAELQVTLTVEDVHVLISETCESFTLHGKQDFPD

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_3|108_bp
atggacgccgagcttcaggtaactctcacagtggaagatgttcatgtcctgatctcagaa
acctgtgaatcttttacattacatggcaaacaggactttccagattaa

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_4|188_aa
MSGESFGCHIGGASGIWWVEPRDAAQHPTMHRTKDYPAVMVVAPNWISLEVDPKWYCAIN
SILVISITHSTKMFARFNDVAEYATILLLINSCLNQSIDCDLCQPIRIQQASTSQNSVSV
NQLEPNKCQTVRAHRGSTHQNSTSVDSSEPKCQTHQNSTSAHQSEPNKCQPIRTQQVSAY
QNSMSISP

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_4|567_bp
atgtctggagagagttttggctgccacattgggggtgctagtggcatctggtgggtagag
cccagggatgctgctcaacatcctacaatgcacaggacaaaggattatccagctgtaatg
gtggtagcaccaaactggataagccttgaagtagatccgaaatggtattgtgctataaat
agcattctggttattagtatcactcactcaacaaaaatgtttgcaagattcaatgatgtt
gctgaatatgcaacaattttgctgcttatcaattcatgcctgaatcaatcaatagactgt
gatctgtgtcaacccatcagaattcaacaagcatcaactagtcagaactcggtaagtgtc
aaccagttagaacccaacaagtgtcaaacagtcagagctcatcgggggtcgacccatcag
aactcaacaagtgttgactcatcagaacccaagtgccaaactcatcagaactcaacaagt
gcccaccagtcagaacccaataagtgtcaacccatcagaactcaacaagtgtccgcctat
cagaactcaatgagcatcagcccatga

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_5|306_aa
MAEGTGTFGRVHLVKEKTAKHFFALKVMSIPDVIRLKQEQHVHNEKSVLKEVSHPFLIRL
FWTWHDERFLYMLMEYVPGGELFSYLRNRGRFSSTTGLFYSAEIICAIEYLHSKEIVYRD
LKPENILLDRDGHIKLTDFGFAKKLVDRTWTLCGTPEYLAPEVIQSKGHGRAVDWWALGI
LIFEMLSGFPPFFDDNPFGIYQKILAGKIDFPRHLDFHVKDLIKKLLVVDRTRRLGNMKN
GANDVKHHRWFRSVDWEAVPQRKLKPPIVPKIAGDGDTSNFETYPENDWDTAAPVPQKDL
EIFKNF

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_5|921_bp
atggcagaaggcactgggacgttcgggcgggtgcacctggtgaaggagaagacagccaag
catttcttcgccctcaaggtgatgagcattcccgacgtcatccgcctaaagcaggagcaa
cacgtacacaatgagaagtctgtcctgaaggaagtcagccacccgttcctcatcaggctg
ttctggacgtggcatgacgagcgcttcctctacatgctcatggagtacgtgccgggcggc
gagctcttcagctacctgcgcaaccgggggcgcttctccagcaccacggggctcttctac
tctgcagagatcatctgtgccatcgagtacctgcactccaaagagatcgtctacagggac
ttgaagccagagaacatcctgctggatagggatggccacattaagctcacggactttggg
ttcgccaagaagctggtagacaggacttggaccctctgtggaacacccgagtacctagcc
cccgaagtcattcagagcaagggccacggaagggccgtggactggtgggccctcggcatc
ctgatattcgagatgctttcggggtttcctccgttttttgatgacaacccgtttggcatt
tatcagaaaattcttgcaggcaaaatagatttccccagacatttggatttccatgtaaaa
gacctcattaagaaactgctcgtggttgacagaacaaggcgattaggaaacatgaagaac
ggggcgaatgatgtgaagcatcatcggtggttccgctccgtggactgggaagctgttccg
cagagaaaactgaagcctcccatcgtgcccaagatagctggtgacggcgacacttccaac
ttcgaaacttaccctgagaatgactgggacacagccgcgcccgtgccgcagaaggattta
gaaatcttcaagaatttctga

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_6|177_aa
MRRAPASPPPARAAAPAFPAVVPHSVPAPRGRRLLPLGAVAACAAASREARLPERSGLAR
CPGPECVPMEAPGLAQAAAAESDSRKVAEETPDGAPALCPSPEALSPEPPVYSLQDFDTL
ATVGGLPVVLYCGGSSPKTKSGATIIIFVSPTPRFLCQNPNPQGTPVIVFRVHSNFG

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_6|534_bp
atgcgcagggcccccgcctcgccccccccagcccgggccgcggcccccgccttccccgca
gtcgtcccgcactcggtgcccgccccccgaggccggcggctgctcccactcggggccgtt
gctgcttgtgccgctgcgtcccgggaagcccggctccccgagcgctccggcctggcccgg
tgccccggacctgagtgcgtccccatggaggcgcccgggctggcccaggcggccgcggcg
gagagcgactcccgcaaggtggcggaggagacccccgacggggcgcccgcgctctgcccc
agccctgaggcgctgtcgccggagccgcctgtgtacagcctgcaggactttgacacgctg
gccaccgtgggtggcctccccgtggtcctctactgtggtgggtccagtcccaaaaccaag
tctggggccaccatcatcatatttgtgtcccccaccccaagattcttatgtcaaaaccct
aatccccaaggaacacccgtcattgtgtttagggtccactccaattttggatga

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_7|208_aa
MQTVLNLRAWHGLDAAPLTRDQGGPGCRFADHSLSSKGFPFTAICGEAATKLQIFVKTLR
GKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCNIQKEPTLHL
LLRLCGVAKKRKKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISALLTNVELECFCHTE
CASFLFAFCHDCSNLLGLIKDRTNSYSD

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_7|627_bp
atgcagacagtgcttaacttgcgggcctggcacggcctggacgctgcgcccctgacccgc
gaccagggcggcccaggctgccggttcgccgaccacagtttgagcagcaagggcttccct
ttcactgccatctgcggtgaagctgccaccaaactgcagattttcgtgaaaaccctaagg
gggaagaccatcacccttgaggttgaaccctcagatgcgatagaaaatgtaaaggccaag
atccaggataaggaaggaattcctcctgatcagcaaagactgatctttgctggcaagcaa
ctggaagatggacgtactttgtctgactgcaacattcaaaaggagcctactcttcatctt
ttgctgagactttgtggtgttgctaagaaaaggaagaagtcttaccccactcccaagaag
aataagcacaagagaaagaaggtgaagctggatgtcctgaaatgttataaggtggatgag
aatgacaaaattagtgcccttctgacgaatgtggagctggagtgtttctgccatacagaa
tgtgcctccttcctcttcgccttctgccatgattgttccaacctactgggcttgatcaag
gacaggaccaattcctattcagattaa

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_8|134_aa
MEYYTAIKKNEIMPFAATWMELEAIILSELTQEQKINACSYLQVGAKHCVLTDIKMGKVD
PGDSYKGERGGARVEKLTIEYYVGDRLNRSPNLSTMQYIHVTNLYMYPLNLKFFLKTHHQ
IDFIPTRTASIKVG

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_8|405_bp
atggaatactacacagccataaaaaagaatgaaatcatgccctttgcagcaacatggatg
gagctggaggccattattctaagtgaactaacacaggaacagaaaatcaacgcatgttct
tacttacaagtgggagctaaacattgtgtactcacagacataaagatgggaaaagtagac
cctggggactcctacaagggggagagagggggagcaagggttgaaaaactaaccattgag
tactatgtgggtgacaggctcaacagaagcccaaacctcagcaccatgcaatatatccat
gtaacaaacctgtacatgtaccccttaaatctaaaatttttcttaaaaacccaccatcag
attgacttcatacccactaggacagctagcatcaaggtcggataa

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_9|100_aa
MREKEMKEEEEKEEEEEKKKKLEGEGGEREGTIGGEGGGGIERGGEKERKVGGRSELENK
RMNLLKLQYGMELDYDKRSQWKYRDILDLRNAVYLWFDRE

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_9|303_bp
atgagggagaaggagatgaaggaggaggaggaaaaggaggaggaggaggagaaaaagaaa
aaattggagggagaaggaggagaaagagaaggaacaataggaggagaaggaggaggagga
atagaaagaggaggagaaaaagaaagaaaagttggagggaggagtgaattggaaaacaaa
agaatgaacctcctcaaacttcagtatggcatggagttggactatgacaagagaagccag
tggaagtatagagacatcttggacttaagaaatgctgtgtacctatggtttgacagagag
tag

>gi568815575r:3512203_3813253|GENSCAN_predicted_peptide_10|144_aa
XSIHNSKDTESTPVPIHVEWIRKMWYIYTMDYYTAIRKNKIMSFVATKMQLEAIILSKLI
QEPNMGHILTYKVGRTLSLRVRKQKQVWFSLIMPQDEKAETGYLSGDSGPTLIQDELILR
SLTYICITYFTHILQYICEDRISK

>gi568815575r:3512203_3813253|GENSCAN_predicted_CDS_10|435_bp
nnctctattcacaatagcaaagacacggaatcaaccccggtgcccatccatgtggagtgg
ataaggaaaatgtggtacatatacaccatggactactacacagccataagaaagaataaa
atcatgtccttcgtagcaacaaagatgcagctggaggccattattctaagcaaattaatt
caggaaccaaatatggggcatattctcacttataaagtgggaagaactctctcactgcga
gtgagaaagcagaaacaggtgtggttttccttaataatgcctcaggatgagaaagcagaa
acaggatacttgtcaggggactcagggcccaccctaatccaggatgagctcatcttgaga
tccttaacctacatctgcatcacttacttcacacacatccttcagtacatctgtgaagac
cggatttccaaataa