GENSCAN 1.0	Date run:  6-Nov-116	Time: 12:56:09

Sequence gi568815576r:29689016_29932325 : 243310 bp : 48.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3047   3165  119  1  2   59   68   106 0.060   5.47
 1.02 Intr +  11466  11618  153  0  0   36   67    86 0.010   0.49
 1.03 Intr +  13813  13948  136  1  1   41   49   127 0.015   4.67
 1.04 Intr +  18011  18144  134  1  2   76   80    77 0.734   5.14
 1.05 Intr +  21317  21524  208  2  1   87   40    82 0.220   2.38
 1.06 Intr +  25774  25955  182  0  2   46   67   115 0.526   3.87
 1.07 Intr +  31310  31571  262  2  1   88   72   296 0.162  25.49
 1.08 Intr +  31637  32116  480  1  0    8  -15   259 0.299   0.83
 1.09 Intr +  33726  33834  109  2  1   62   60    73 0.634   1.76
 1.10 Intr +  38647  38790  144  2  0   79   89   342 0.969  33.65
 1.11 Intr +  39615  39727  113  1  2   94   63   132 0.998  11.40
 1.12 Intr +  40040  40193  154  1  1   40   70   406 0.937  33.65
 1.13 Term +  40427  40554  128  0  2   30   42   314 0.934  19.44
 1.14 PlyA +  42792  42797    6                              -0.45

 2.06 PlyA -  42866  42861    6                              -0.45
 2.05 Term -  45010  44848  163  0  1   82   53    83 0.747   1.61
 2.04 Intr -  49426  49315  112  2  1  123   92    76 0.960  10.94
 2.03 Intr -  51715  51635   81  2  0   90   83   132 0.994  12.51
 2.02 Intr -  53465  53403   63  0  0  111  103    74 0.987   9.89
 2.01 Init -  59529  59403  127  0  1   99   90   335 0.986  35.12
 2.00 Prom -  60803  60764   40                              -4.26

 3.00 Prom +  68700  68739   40                              -2.26
 3.01 Init +  69920  69968   49  1  1   99  103    28 0.973   6.51
 3.02 Intr +  73321  73392   72  2  0   10  105    80 0.470   1.28
 3.03 Term +  73436  73509   74  0  2   53   49    82 0.807  -1.13
 3.04 PlyA +  73718  73723    6                               1.05

 4.00 Prom +  74759  74798   40                              -7.26
 4.01 Init +  78384  78533  150  2  0  101   60   399 0.952  38.44
 4.02 Term +  84488  84643  156  1  0  108   43   114 0.873   6.83
 4.03 PlyA +  85497  85502    6                               1.05

 5.22 PlyA -  85843  85838    6                               1.05
 5.21 Term - 100169  99998  172  1  1   96   53   203 0.920  14.90
 5.20 Intr - 101533 101454   80  1  2  109   84    24 0.933   2.45
 5.19 Intr - 103520 103418  103  1  1   88   77   144 0.878  13.48
 5.18 Intr - 104475 104345  131  0  2  102   94   318 0.977  33.29
 5.17 Intr - 104661 104562  100  2  1   93   80   215 0.925  21.31
 5.16 Intr - 112095 111976  120  2  0   98  105   185 0.999  20.81
 5.15 Intr - 113193 112979  215  0  2   75   75   380 0.999  32.91
 5.14 Intr - 115815 115623  193  2  1  -12   87   215 0.166  10.89
 5.13 Intr - 117538 117470   69  0  0   98  105   121 0.999  13.10
 5.12 Intr - 117889 117782  108  0  0  102  115    56 0.969   9.10
 5.11 Intr - 119170 119096   75  0  0   65   61    68 0.572   0.43
 5.10 Intr - 124527 124415  113  0  2   46  110    50 0.957   2.18
 5.09 Intr - 125752 125642  111  1  0   77   95    42 0.946   4.38
 5.08 Intr - 127058 126991   68  0  2  125   81    49 0.999   6.52
 5.07 Intr - 133449 133320  130  0  1   84   75   151 0.992  13.67
 5.06 Intr - 136242 136072  171  0  0   99   80   234 0.999  23.84
 5.05 Intr - 136765 136607  159  1  0   52   92   155 0.910  12.48
 5.04 Intr - 139173 139103   71  1  2   38   48    21 0.084  -8.00
 5.03 Intr - 143327 143230   98  1  2  101   93   121 0.615  13.55
 5.02 Intr - 149292 149163  130  1  1  -12  105   210 0.361  12.45
 5.01 Init - 168831 168795   37  0  1   71   53    57 0.061  -1.12
 5.00 Prom - 181143 181104   40                               0.44

 6.00 Prom + 187150 187189   40                              -7.36
 6.01 Init + 194553 194715  163  2  1   54   90   167 0.935  11.39
 6.02 Term + 196813 196922  110  2  2   52   40   121 0.734   2.37
 6.03 PlyA + 202226 202231    6                               1.05

 7.04 PlyA - 204120 204115    6                               1.05
 7.03 Term - 207048 206738  311  1  2   72   42   117 0.490   0.72
 7.02 Intr - 207643 207326  318  2  0  120   62   355 0.881  32.03
 7.01 Init - 210326 210287   40  2  1  100   81     8 0.554  -0.27
 7.00 Prom - 217641 217602   40                              -0.46


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 115784 115623  162  2  0   53   87   184 0.813  14.97
S.002 Term - 117275 117155  121  1  1  103   42   157 0.905  10.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_1|773_aa
MGRQQPGLSKGRAAVAEGSQGPRAAALADQCSQVVAASSCTSFFAFGPRLSGEFLTAVPQ
GCLPQKPSCGREDKEPPTYNEELAVKLWGERLVPRGPPRPCQASFTFQGAKMGVTGPGYR
RSGYGYSHGREPEWNQPFSRPQFPLCTSEQQFSKGSTPRSRLAPSQHRRDSMMDEDPAGG
SWQGHTVRPPSVLVSLDADRAHGSVWRILTWPQQLHQHPQPSSLCPALSCLSFPTCWVAE
AAATRYHVPMGVPGKATKLTWQHLDILMTPLSRGGNQSGDGVSTKFKVILGLLITALPEP
RVLLGEKEEGSRAPRPLQPPPGPPPAHEPRPQSLRRAGGRGASKMPFHPVTAALMYRGIY
TVPNLLSEQRPVDIPEDELEGECPPGSPPRRPSYLCAQVGAPASSCAPRQDLSAPRGAAV
GVAQAESGPAPARVVPSAAETCRAPQRGHGAAQSAVTVRQRGGLGRGSALSPQRRPGRST
RILIPSAAPARGSLLALTFRSCRFKNSICSGSSRRGEGDCPALARCGAAPVPTCGRSPFP
AALRGPPARRAGKAAREAGGLGETQALCREDAIRGGATCARKRELGSPGWNAADKIREAF
KVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKL
STSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHL
GTAEECPVDVETCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_1|2322_bp
atggggcggcagcagccaggtctgtctaaggggcgagcagcagtggccgaaggctcccag
ggccctcgggcagcagcccttgctgaccagtgcagccaggtcgtggctgcctccagctgc
acttcattctttgcctttggtcctcgcctgagtggggagttcctgacagctgttccccag
ggctgcctaccccagaagccttcgtgtggcagagaggataaggagccacccacatataat
gaagagttggcagtgaaactctggggggaaagactggtcccccgaggtcctccaaggcca
tgtcaagccagcttcaccttccaaggagccaaaatgggagtgactggcccaggataccgc
aggagtggctatggctacagccatggccgggagccggagtggaaccagcccttctccagg
cctcagtttcccttgtgcaccagcgagcagcagttttctaaaggttccaccccgaggagc
cggctggcccccagccagcatcgcagggacagcatgatggatgaggatcccgcggggggc
agctggcaaggacacaccgtccgtccgcccagtgtcctggtctccttggacgcagacaga
gcccacggaagcgtctggcgcatcctgacttggccgcagcagctgcaccagcacccccag
ccctcttccctgtgcccagcgctgtcctgcctgtccttccccacctgctgggtggccgaa
gcagccgccacacgctaccatgtccccatgggtgtgccgggcaaggccacaaagctgacc
tggcagcacctggatattttaatgaccccattgtccagaggaggaaatcaaagtggagac
ggtgtaagcaccaagttcaaggtcatcctgggactgttgatcacagccctacctgagccg
cgggtcctgctgggagagaaggaggaggggagccgcgcgccccgcccgctccagccgccc
ccggggccgccaccggcccatgagccccggcctcaaagtttgcggcgggcgggcgggcgc
ggagcctccaagatgccgttccacccggtgacggcggcgttgatgtaccggggcatctac
accgtgcccaacctgctgtcggagcagcgcccggtggacatcccggaggacgagctggag
ggtgagtgtccgccgggatccccgccccggcggccctcctacctgtgcgcccaggtgggc
gccccagctagcagctgtgccccgcggcaagacctgtccgcaccccggggcgccgcggtg
ggggtcgctcaggcggagagcggcccagcccctgcccgcgtggtccccagcgctgcggaa
acttgccgggccccgcagcggggtcacggggccgcgcagtcggcggtgacggtgcggcaa
cgcggcggactggggcgggggtccgcgctgagcccccagcgccggcccggccggagcacc
cgcatcctgatcccctccgcggcgcccgcccgcggctctctgctcgcattgacattccgc
tcgtgtcgctttaaaaattcaatctgctcgggcagcagcagaaggggagagggcgactgc
cctgctcttgcccgctgcggggccgcccccgtccccacctgcggccgtagccccttccct
gcagccctgcggggacccccagcccggcgcgccgggaaggcggcccgggaggcgggcggt
ctgggcgagacccaggccctctgccgggaggacgccattcgcggaggagccacatgtgcc
aggaagagggagctgggcagcccgggatggaatgctgcagacaagatccgagaggccttc
aaggtgtttgaccgtgacggcaatggcttcatctccaagcaggagctgggcacagccatg
cgctcactgggttacatgcccaacgaggtggagctggaggtcatcatccagcggctggac
atggatggtgatggtcaagtggactttgaggagtttgtgacccttctgggacccaaactc
tccacctcagggatcccagagaagttccatggcaccgactttgatactgtcttctggaag
tgcgacatgcagaagctgacggtggatgagctgaagcggctgctctacgacaccttctgc
gagcacctgtccatgaaggacatagagaacatcatcatgacggaggaggagagccacctg
ggcacagccgaggagtgtcccgtggatgtggagacctgctccaaccagcagatccgccag
acttgcgtgcgcaagagtctcatctgcgccttcgccatcgccttcatcatcagtgtcatg
ctcattgcggccaaccaggtgctgcgcagtggcatgaagtag

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_2|181_aa
MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKF
LLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKR
LSSAPSSRTAAGKMQESGSCPHAQDKQVTREATSRVVPDTHLNVPKALAHVSGALAVCQC
V

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_2|546_bp
atggggaagcgatacttctgtgactactgcgaccgctccttccaggacaacctccacaac
cgcaagaagcacctgaacgggctgcagcacctcaaggccaagaaggtctggtacgacatg
ttccgagatgcagctgccatcttgctggatgagcagaacaagcggccctgcaggaagttt
ctactgacaggccagtgcgactttggctccaactgcagattttcccacatgtcagagcga
gacctgcaggagctgagcatccaggtggaggaggagaggcgagccagggagtggctacta
gatgctcctgagctccccgagggccatctggaggactggctggagaagagagccaagcgg
ctgagctcagccccaagtagcaggaccgcggctgggaaaatgcaagagagtggctcctgt
cctcacgcacaggacaaacaggtcaccagagaagctacgagcagagttgtgccagacacg
cacctcaatgtccccaaggctttggctcacgtgtctggggccctggcagtgtgccagtgt
gtgtga

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_3|64_aa
MEGSRDLVHSDEPARGGDPNPQAPERYGSMACQELGRTAGATPHCSHYRLSFVSCQIIGS
IRFS

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_3|195_bp
atggagggttccagagacctggttcactcggatgaaccagccaggggtggggaccccaac
ccccaggccccggaacggtacgggtccatggcctgtcaggagctgggccgcacagcagga
gccactccccattgctcgcattaccgcctgagcttcgtctcctgtcagatcatcggcagc
attagattctcatag

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_4|101_aa
MAAATLTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEGPDVIQPELDY
PESSLMEEDSGQETHGEVGETLEIVQFFLPEVYLCEDEVEA

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_4|306_bp
atggcggccgcgacgttgacttcgaaattgtactccctgctgttccgcaggacctccacc
ttcgccctcaccatcatcgtgggcgtcatgttcttcgagcgcgccttcgatcaaggcgcg
gacgctatctacgaccacatcaacgaggggcctgatgtgattcagccagagctggattat
ccagaatcttctctgatggaggaagattcaggtcaggaaacccatggagaggtaggagag
accctagaaattgtccagtttttcctacctgaggtgtatctttgtgaagacgaagttgaa
gcctag

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_5|817_aa
MRGASARPPLLGSRDFLSAPAESQFDPGSAGAQGAVTVVGGGGGGGGTEPVVEPPRRVTQ
HNASSAPGPTPDHPQGPEDRKAEDFTSAVLILECLEPWRKSACSGKPSLILQHPEQKADR
YFVLYKPPPKDNIPALVEEYLERATFVANDLDWLLALPHDKFWCQVIFDETLQKCLDSYL
RYVPRKFDEGVASAPEVVDMQKRLHRSVFLTFLRMSTHKESKDHFISPSAFGEILYNNFL
FDIPKILDLCVLFGKGNSPLLQKMIGNIFTQQPSYYSDLDETLPTILQVFSNILQHCGLQ
GDGANTTPQKLEERGRLTPSDMPLLELKDIVLYLCDTCTTLWAFLDIFPLACQTFQKHDF
CYRLASFYEAAIPEMESAIKKRRLEDSKLLGDLWQRLSHSRKKLMEIFHIILNQICLLPI
LESSCDNIQGFIEEFLQIFSSLLQEKRDETRTAYILQAVESAWEGVDRRKATDAKDPSVI
EEPNGEPNGVTVTAEAVSQASSHPENSEEEECMGAAAAVGPAMCGVELDSLISQVKDLLP
DLGEGFILACLEYYHYDPEQVINNILEERLAPTLSQLDRNLDREMKPDPTPLLTSRHNVF
QNDEFDVFSRDSVDLSRVHKGKSTRKEENTRSLLNDKRAVAAQRQRYEQYSVVVEEVPLQ
PGESLPYHSVYYEDEYDDTYDGNQVGANDADSDDELISRRPFTIPQVLRTKVPREGQEED
DDDEEDDADEEAPKPDHFVQDPAVLREKAEARRMAFLAKKGYRHDSSTAVAGSPRGHGQS
RETTQERRKKEANKATRANHNRRTMADRKRSKGMIPS

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_5|2454_bp
atgaggggcgcctctgcccggccgcccctactgggaagccgagacttcctgtctgctcct
gcggaatcgcagtttgaccccggaagtgcgggcgctcagggagctgtcaccgtggtcggc
ggcggcggcggcggcggcggcacagagccggtggtggagccgccgaggagggtcacgcag
cacaatgccagctctgcccctggaccaactccagatcacccacaaggacccgaagacagg
aaagctgaggacttcaccagcgctgtccttatcctcgaatgcttggagccttggaggaag
tctgcttgctctgggaagccgtcccttatcctccagcaccccgagcagaaggcagaccgg
tattttgtgttatacaaaccgccccctaaagacaacattcccgccctagtggaggagtac
ctggaacgcgccaccttcgtagccaatgacctcgactggctcctggccttgcctcacgat
aaattctggtgccaggtgatctttgacgagactctacagaagtgcctggactcctacctg
cgctatgtcccccgcaaattcgacgagggggtggcctcagcccctgaggttgttgacatg
cagaagcgcctccatcgaagtgtttttctcaccttcctccgcatgtccactcacaaggaa
tccaaagatcacttcatttccccttctgcgtttggagaaatcctctacaataacttcctc
tttgacattccaaagatcctggacctctgcgtgctctttggaaaaggcaactcaccactg
ctccagaagatgataggaaacatctttacacagcagccaagttactacagtgacctggat
gaaaccctgcctaccatccttcaggtcttcagcaatatcctccagcactgtggtttgcaa
ggggacggggccaataccacaccccagaagcttgaggagaggggccgattgacccccagt
gacatgcctctcctggaattaaaggacattgttctctacctttgtgatacctgcaccaca
ctttgggcctttctggatatcttccctttggcttgccagaccttccagaagcacgacttt
tgttacagactagcttccttctacgaagcagcaattcccgaaatggagtctgcaattaag
aagaggaggcttgaagatagcaagcttcttggtgacctgtggcagaggctctcccattcc
aggaagaagctaatggagattttccacatcatcctgaaccagatctgcctccttcccatc
ctagaaagcagctgtgacaacattcagggcttcatcgaagagttccttcagatcttcagc
tccttgctgcaggagaagagggacgagacgcggactgcctacatcctccaggcagtcgag
agtgcatgggaaggggtggacagacggaaagccacagatgctaaagacccatcggtgatt
gaggagcctaatggggagcctaacggggtcacggtgacagcagaggcagtcagtcaagca
tcatcacatccggagaactcggaggaagaggagtgcatgggagcagccgcggctgtgggc
cctgccatgtgtggggtggaactggactctctcatctcccaagtgaaggacctgctgcca
gaccttggtgagggcttcatcctggcctgcctggagtactaccactacgacccagagcag
gtgatcaacaatatcctggaggagcggctggcccccaccctcagccagctggaccgcaac
ctagacagagaaatgaaaccagaccctacacccctgctgacgtctcgccacaacgtcttc
cagaatgacgagtttgatgtgttcagcagggactcagtagacctgagccgggtgcacaag
ggcaagagcaccaggaaggaggaaaacacgcggagtttgctgaacgacaagcgtgcagtg
gcggcacagcggcagcgctacgagcagtacagcgtggtggtggaggaggtgccactgcag
ccaggcgagagcctgccctaccacagtgtctactacgaggatgagtacgatgacacatac
gatggcaaccaggtgggcgccaatgatgcagactctgatgacgagctcatcagccgcagg
ccattcaccatccctcaggtgctgagaaccaaagtgcctagagaagggcaggaggaggat
gacgacgatgaggaagacgatgctgacgaggaggctcccaagcccgaccattttgttcag
gaccctgcagtgctgagagagaaggcagaagccaggcgcatggcctttctcgccaagaaa
gggtaccggcatgacagctcaacagcagtggccggcagcccccgaggccatgggcagagc
cgcgagacaacccaggaacgcaggaagaaggaagccaacaaggcgacaagagccaaccac
aaccggagaaccatggccgaccgcaagaggagcaaaggcatgatcccatcctga

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_6|90_aa
MGARRPSSARTLDAGEAGSRARAAFPDLAGMGPCGSGCGTYPRSARSYSHELPGVKWNAV
TKGSIRVLEGGVVKVLTSLEEVEENVVTIV

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_6|273_bp
atgggagctcggcggccgagctcggcccggaccctagatgcgggggaggcggggtcccgg
gctcgggctgccttcccagacctggcggggatgggcccgtgcggctctgggtgtgggacg
taccctcggagcgcccggagttattcccacgaactcccgggagtaaagtggaatgctgtt
accaaaggaagtattcgtgttttagaggggggtgtggtgaaggttcttacaagtttggaa
gaggtggaagaaaatgttgttacaattgtgtag

>gi568815576r:29689016_29932325|GENSCAN_predicted_peptide_7|222_aa
MAHVYNPSTLGGQDYGNYVRQKANSSDFLEFKMGREAVETTHNINYTSGPETVQWWFKKC
CKGDESLEDEECSGRPEVGNDQLRAIIEADPLTTTREIAEELNVDHSTLVWQAIEANWKV
LGIQAWATTPSQKVKKLDKWVPHELTENFKNCRFEMLSSLILRNDDEPFLGWIVMCDKKW
ILYNNSDDQLSGWTEKTLQSTSQSRTCTKKWSWSLFGGLLLV

>gi568815576r:29689016_29932325|GENSCAN_predicted_CDS_7|669_bp
atggctcacgtctataatcccagcactctgggaggccaagactatggaaattatgttaga
caaaaagcaaattcaagtgattttcttgagttcaaaatgggtcgtgaagcagtggagaca
actcacaacatcaactacacatctggcccagaaactgtgcagtggtggttcaagaagtgt
tgcaaaggagacgagagccttgaagatgaggagtgtagtggccggccagaagttggcaat
gaccaactgagagcaatcatcgaagctgatcctcttacaactacacgagaaattgccgaa
gaactcaatgtcgaccattctacccttgtttggcaggcaattgaagccaactggaaagtg
ctgggaatacaggcgtgggctaccacgcccagccaaaaggtgaaaaagcttgataagtgg
gtgcctcatgagctgaccgaaaattttaaaaattgtcgatttgaaatgttgtcttctctt
attctacgtaacgacgacgaaccatttcttggttggattgtgatgtgcgacaaaaagtgg
attttatacaacaacagtgatgaccagctaagtggctggaccgagaagacactccaaagc
acttcccaaagccgaacttgcaccaaaaagtggtcatggtcactgtttggcggtctgctc
ctggtctga