GENSCAN 1.0	Date run:  6-Nov-116	Time: 13:02:46

Sequence gi568815578f:59200813_59424456 : 223644 bp : 46.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6093   6244  152  0  2  121   95     2 0.785   4.01
 1.02 Intr +   7456   7654  199  2  1  109   49    97 0.722   6.31
 1.03 Intr +   8277   8380  104  0  2   51   56    60 0.281  -1.08
 1.04 Intr +   9708   9799   92  1  2  129   44    52 0.495   4.61
 1.05 Intr +  22441  22531   91  0  1   93   36    47 0.001  -0.43
 1.06 Intr +  28168  28225   58  2  1   89   94     9 0.000  -0.46
 1.07 Intr +  48703  48825  123  1  0   96   15   139 0.811   7.10
 1.08 Intr +  51573  51607   35  0  2   48   80    54 0.846  -1.53
 1.09 Intr +  52166  52326  161  0  2  130   86    30 0.959   6.71
 1.10 Term +  53086  53931  846  0  0  108   48   276 0.939  18.48
 1.11 PlyA +  55198  55203    6                               1.05

 2.05 PlyA -  56842  56837    6                               1.05
 2.04 Term -  77998  77721  278  2  2   76   41   237 0.503  13.42
 2.03 Intr -  78692  78599   94  2  1   63   16   116 0.552   1.44
 2.02 Intr -  80771  80701   71  0  2   79   82    31 0.089   0.50
 2.01 Init -  87455  87380   76  2  1   87   84    30 0.101   3.78
 2.00 Prom -  97382  97343   40                              -5.96

 3.00 Prom +  99019  99058   40                              -9.55
 3.01 Init + 100001 100052   52  1  1   51  115    76 0.880   5.96
 3.02 Intr + 100664 100910  247  0  1   16   91   258 0.513  15.42
 3.03 Term + 101068 101188  121  1  1   40   47   122 0.510   1.25
 3.04 PlyA + 103446 103451    6                              -0.45

 4.00 Prom + 104788 104827   40                              -3.36
 4.01 Init + 105537 105623   87  2  0   80   53    61 0.065   2.74
 4.02 Intr + 112409 112518  110  1  2  107   29    56 0.106   0.68
 4.03 Intr + 120205 120381  177  1  0  120   80   148 0.989  16.23
 4.04 Term + 126638 126824  187  2  1   82   49   138 0.731   6.26
 4.05 PlyA + 132820 132825    6                               1.05

 5.14 PlyA - 132943 132938    6                               1.05
 5.13 Term - 141776 141568  209  0  2   77   43   157 0.256   7.60
 5.12 Intr - 156219 156082  138  1  0   95   41   127 0.001   9.14
 5.11 Intr - 158986 158870  117  2  0   46  103    35 0.000   1.24
 5.10 Intr - 166693 166654   40  1  1  123   50    13 0.001  -1.20
 5.09 Intr - 168402 168222  181  2  1   18   77   106 0.007   2.37
 5.08 Intr - 179256 179081  176  0  2  116   60    78 0.479   6.54
 5.07 Intr - 187790 187698   93  2  0   99   91   113 0.682  12.86
 5.06 Intr - 189062 189032   31  1  1   82   85    28 0.042   0.03
 5.05 Intr - 189725 189614  112  0  1   62   64    -7 0.005  -6.26
 5.04 Intr - 193337 193254   84  0  0   81   94    33 0.011   2.99
 5.03 Intr - 202662 202540  123  1  0   45   52   110 0.055   3.66
 5.02 Intr - 208323 208183  141  1  0   60   82    47 0.058   1.62
 5.01 Intr - 210647 210510  138  0  0   95   49    87 0.170   5.94

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  65621  65529   93  2  0   92   95    34 0.847   4.66
S.002 Intr + 158886 159042  157  2  1   94  109   111 0.989  13.38
S.003 Term + 164924 165150  227  0  2   61   48   136 0.871   3.84


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:59200813_59424456|GENSCAN_predicted_peptide_1|620_aa
XYKGNFLQSCVQLRASRLRTPTWVRRRSRHPPALEGLKPCRTPGQTSSEIAAKLPIGLCL
ILPRPMEGISGLNAGLYHQDKRMSPPCKGQGTMQLSAFSLGRPVTGTGAIDITSVLSSSD
ATGNDIGRSVCFPGTSRVCLSRMSTVCQCEIQGDTVPNVFHGSWHPCLICSLSCMLMVTL
GASGCKAESRILPQNAGSQSLHGDQDSRTLRLPTSVNHHSTLYLCEIYFFSLTLFKVEHG
AWVIEGAQDVVVEQVNGVPKAWFCAIRLPEYTGGSSVRVKDEGKTGLNLQEEPSCATSES
PPCCGKEEKKEGDCRQTLGTLSLGTSSRIVREMDKRTVKDISPSAGEHGDCTTHSTAATS
GLSLQSDTCLAVVNDVPLPPGKGLDLGLLETQLLASQDSVSTDPKPYIFSDAQRPSSFGS
KGTFPHHDIATSVAAVCISLPVRTDHIAQEIHSAESRDHSQTAGRTLTSSSPDSKVTEEG
RAQTLLPGRPSSGQRISDSVPLESTEKTHLEIPASGPSSASSHHKEGRHKTFFPSRGQYG
CGEMTVPCPSLGSDGRKRQVSGLITRKDSVVPSKPEQPIEIPEAPSKSLKKRSLEGMRKQ
TRVEFSDTSSDDEDRLVIEI

>gi568815578f:59200813_59424456|GENSCAN_predicted_CDS_1|1863_bp
nngtacaaagggaatttcttgcagagctgtgttcagctgagagccagtagacttcgcaca
ccaacctgggtgcgaagaagaagccgccaccctcccgcacttgagggactgaagccatgc
aggacccctgggcagacctcttcagaaatagcagcgaaattgcccattgggctgtgcttg
atactgccacgccccatggagggcatctcagggctaaatgctggtctgtaccaccaggac
aagaggatgtctcccccatgcaaaggccaggggaccatgcaactctctgctttctcgttg
ggccgtcctgtgacaggcacaggtgccatcgatatcacctctgtgctctccagctcagat
gccaccgggaacgacattggcagatctgtttgcttccccgggacatctcgtgtctgtctg
tctaggatgtcgacggtctgtcagtgtgagattcaaggggacacagttcccaacgtgttc
catggaagttggcacccctgcctcatctgcagcttatcctgcatgctcatggtgaccctg
ggggcctcaggatgtaaagcagaatccaggattctgccgcaaaatgcaggctcccaatcg
ctgcacggtgaccaggactcccggacccttcgcttgccaacctctgttaaccaccattct
actctctacctctgtgagatctacttctttagtctcacactcttcaaggtggagcatggt
gcctgggtcattgaaggggcccaggatgtggttgttgaacaggtgaatggagtaccaaaa
gcctggttctgtgccattagattacctgagtacacgggagggtcatcagtgcgggtgaag
gatgaaggaaagacaggtctgaatctgcaagaggagccatcttgtgccacctcagaatca
cctccttgttgtgggaaggaagagaagaaggaaggtgactgcagacaaaccttaggaacc
ctctctcttggtacaagttcaagaattgtcagggaaatggacaaacgaactgtgaaggat
atttctccatctgctggtgagcatggtgactgtactactcacagcactgctgccacatca
ggattatctctgcaatctgacacctgcctggcagtggttaatgacgtgcctctaccccct
ggcaaaggtcttgaccttgggttgctggagactcagctgctggcctcccaggattcagtc
tcaacagatcccaaaccatacatcttctcagatgctcaaaggccttcttcctttgggtcc
aaaggaacttttccccaccatgacattgctacctctgtggctgccgtttgtatttctctg
ccagtgagaacagatcacatagcccaggaaattcacagtgctgaatcacgagaccacagc
cagactgcagggaggactctgacatcaagctccccagacagcaaagtcacagaagagggc
agagcacagaccctcttgccagggagaccttcatctggacaaagaatttcagattcggtt
ccactggagtcaactgaaaaaactcatcttgaaataccagcttcaggaccaagttcagct
agttcacaccacaaggaagggagacacaagacgttttttccttccagaggccagtatggg
tgtggggaaatgactgtcccctgcccctctttaggaagtgacggtaggaaacgtcaggta
tctggattaatcactcggaaagattctgtggttccttctaagccagagcagcccatagaa
attcctgaagccccttctaaatccctcaagaagaggagtctggaaggaatgagaaagcaa
actcgagtagagttcagtgacaccagcagcgacgatgaagaccgattagttatagaaata
tga

>gi568815578f:59200813_59424456|GENSCAN_predicted_peptide_2|172_aa
MRSAKKEVFPAFIPSANLLKTICEPGTFPQWSQECRHFWQTEKPCGKGWPQKPLDFNQKF
IGAKEPNKTSIRNSLDAFFETRNCHSSSLSGFLHTPVANSYSPNSKQEVTAGKQLNKAKV
IKVTGWEMKDASTPQAEGSLKTGIRSDSSLSEIDTLPDKVKILNNHSLNPFV

>gi568815578f:59200813_59424456|GENSCAN_predicted_CDS_2|519_bp
atgcgctctgcaaagaaggaggtcttccctgctttcattccatcagcaaatttactaaag
accatctgtgagccaggtacatttccccaatggagtcaagaatgccgacacttctggcaa
acagaaaagccttgtgggaaaggctggccacagaaaccattggacttcaaccagaagttc
attggagcaaaagaacccaacaaaacaagcatcaggaattctttagatgccttctttgaa
accagaaattgccacagttcttcgctttctggttttctacacaccccagttgccaacagc
tatagccctaactccaagcaggaagtgaccgctggaaagcagctgaacaaagcaaaggtg
atcaaggtcactggatgggagatgaaggatgcatcgacacctcaggccgaagggtccttg
aagacaggaatcaggtctgattcttctttgtctgaaatcgacacattacctgacaaagtc
aaaatcctcaataaccactcactcaacccatttgtctaa

>gi568815578f:59200813_59424456|GENSCAN_predicted_peptide_3|139_aa
MEPGLWLLFGLTVTSAAARSEGDCEETVAGPGEETVAGPGEGTVAPTALQGPSPGSPGQE
QAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINTPESLLQVRGVTHIPPEGLAQEK
LNPEFDPVEGGALPLNEVN

>gi568815578f:59200813_59424456|GENSCAN_predicted_CDS_3|420_bp
atggagccggggctgtggctccttttcgggctcacagtgacctccgccgcagccagatct
gagggggactgtgaagagactgtggctggccctggcgaggagactgtggctggccctggc
gaggggactgtggccccgacagcactgcagggtccaagccctggaagccctgggcaggag
caggcggccgagggggcccctgagcaccaccgatccaggcgctgcacgtgcttcacctac
aaggacaaggagtgtgtctactattgccacctggacatcatttggatcaacactcccgag
tctcttctgcaggtcaggggtgtgacccacatcccccctgagggcctggcccaagagaaa
ctcaatcctgagtttgatcctgtggaaggaggagccctccctctgaatgaagtgaactga

>gi568815578f:59200813_59424456|GENSCAN_predicted_peptide_4|186_aa
MTICVALSQEVLLPLCDPLEGADISRSRTVFIIEILGLDFEPDMVSAALDGEVNGADTTS
GSGWTRQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQT
LDVSRMWGSTQQELQRSLEALTGPGVQELPRCHGGPRQRRTAKDFQESWAVRGPDVAGFS
GIWVEE

>gi568815578f:59200813_59424456|GENSCAN_predicted_CDS_4|561_bp
atgactatctgtgtggccttgagccaggaggtgctgttgcctctctgtgaccctctggaa
ggtgcagacatcagccgctccaggacagtatttattattgagatattgggacttgatttt
gagccagacatggtgtcagctgccctggatggagaggtgaatggggcagacacaaccagt
ggctccggctggacaagacagacggtgccctatggactgtccaactacagaggaagcttc
cggggcaagaggtctgcggggccacttccagggaatctgcagctctcacatcggccacac
ttgcgctgcgcttgtgtggggagatatgacaaggcctgcctgcacttttgcacccaaact
ctggacgtcagcaggatgtggggcagcacacagcaggagctgcagcgttcactcgaggca
ctaacaggtcctggagtccaggagctgcccaggtgccacggaggccccaggcagaggagg
acagccaaggacttccaggagtcatgggcagtccgaggcccagacgtggcaggcttttct
ggcatctgggtggaggaatga

>gi568815578f:59200813_59424456|GENSCAN_predicted_peptide_5|527_aa
XPMARYFQMVVELHSPSCSRDPYFCSVSTVSDGHSARWQAMLSFFPGEETMHPLLVSSYV
CLVLLTVCTIRESSACCSQTSHANEDLDRMYLAGASGREGVTGYIELLLRHLCIQAREKT
ERLPARGDRFPPGLGEKGECQRGSPSVRVTHRRLPVHKRQNPDGTPSSGSEPTFPLSAQG
KRHIWFGVGRLRPHHYLKPSLPGTISQSPLGRQALMTDICVDNCICSIQRPFWASQQLSE
QSSEDEVGVGGSMFPLDSPGFSPQCSDVLGASSVLKNLLLHAKHSETHFCCSFPARSFRR
PGGDVEPDYGSSSDPQAELPTVSWVLLDPSSHKVRKIQEQCIQDGSGTSRIKHKQEQGAH
VLILKAHLSNFSALPDPRGRTEAAQGADTSAALLVSELAHLRFHLRDLQAQTVPEAKWCP
AQANSQGQMEERAAKELQTLSSFLGLQYRIPGCTDTTAGLSQLTYLAKERHGPSAKQMLR
HPHGIPRRALLVLISFPNNTLSCWGKDQVQMRGGHTPGPRAIRTDVQ

>gi568815578f:59200813_59424456|GENSCAN_predicted_CDS_5|1584_bp
nggcccatggctcgctacttccagatggtggtggagttgcacagccccagctgttcccgg
gacccttatttttgctcggtgtccaccgtgtctgacggtcacagtgccaggtggcaggct
atgctctcatttttcccaggtgaggagaccatgcatccacttcttgtttcctcctatgtc
tgcttggtcctcctcacggtgtgcacgatcagagaaagttctgcctgttgctcccaaact
tcccatgctaatgaggacttagaccgcatgtacctagcaggggcgtctggccgcgagggc
gtcacggggtacattgaactcctgctgcgacacctgtgtatccaggcccgggagaagaca
gagcgcctccctgcaaggggagaccggttcccacctggactaggtgagaaaggtgagtgt
cagagaggctcaccaagtgtcagagtgactcaccgaaggttacctgttcacaagaggcag
aacccagacgggactccatcctctgggtccgagccaactttcccactgtcagctcagggg
aaaaggcatatctggtttggggttggaaggctgaggccacaccactacctgaagcccagc
ctgcccggcaccatctcccagagccccctgggcaggcaggcgttgatgacggacatctgt
gttgacaactgcatctgcagcatccagcgcccattctgggccagccagcagctctctgag
cagagctctgaggatgaagtgggtgttggaggctctatgttcccactggacagtcctggg
ttctccccacaatgcagtgatgttctgggagcttccagtgtgctcaagaacctgttactc
catgcaaagcactcagagacccacttctgctgctctttcccagcacggagcttccgccgc
cctggtggagatgtggagcctgactatggatcatcaagtgaccctcaggcagaactaccc
acagtaagttgggttctcttagatccatcaagtcataaagtcaggaagatccaggaacaa
tgtattcaagatggaagtggtacttcgaggatcaagcacaagcaggagcagggggcacat
gtgttgatcctgaaggcacatctcagcaatttttctgcactgccggatccaagaggaagg
actgaggctgcccaaggtgctgacaccagcgcggccctgcttgtgagtgagctcgcccat
ctccgctttcatctcagagatctgcaggcacagacagtgccagaagcaaaatggtgccca
gcacaggcaaacagccagggccagatggaagagagggctgccaaggagctgcagacgttg
agcagcttcctggggctgcagtataggatcccgggctgcactgacaccactgcagggctg
agccagctcacatacctggcaaaggagcgacatgggcccagtgcaaagcagatgctgcgc
caccctcacggcatccccaggagggcactccttgttctcatttccttccccaacaacaca
ctcagctgctggggcaaggaccaggtgcagatgagaggaggacacacgccagggccccgg
gccatccgcacggacgtccagtga