GENSCAN 1.0	Date run:  6-Nov-116	Time: 01:53:17

Sequence gi568815578r:50904042_51110338 : 206297 bp : 45.67% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   9919  10198  280  0  1   79   54   164 0.191   9.15
 1.02 Term +  17474  17685  212  0  2   49   55    66 0.340  -3.14
 1.03 PlyA +  19921  19926    6                               1.05

 2.08 PlyA -  20944  20939    6                               1.05
 2.07 Term -  26701  26525  177  1  0   13   52   121 0.547  -1.31
 2.06 Intr -  26955  26785  171  0  0   51  121   146 0.760  14.34
 2.05 Intr -  32221  32107  115  0  1   62   69   187 0.909  14.65
 2.04 Intr -  38101  37990  112  2  1   60   96    30 0.040   0.44
 2.03 Intr -  44621  44588   34  2  1   84   97    24 0.087   0.70
 2.02 Intr -  51244  51145  100  0  1   47   87   106 0.912   6.51
 2.01 Init -  54482  54322  161  2  2  106   59   255 0.995  23.70
 2.00 Prom -  54650  54611   40                              -6.36

 3.00 Prom +  54676  54715   40                             -16.02
 3.01 Sngl +  54802  56184 1383  0  0  108   51  1639 0.999 158.30
 3.02 PlyA +  57022  57027    6                               1.05

 4.05 PlyA -  57241  57236    6                               1.05
 4.04 Term -  60808  60710   99  1  0  109   36    40 0.183  -0.97
 4.03 Intr -  65506  65430   77  2  2   89   45    28 0.055  -2.17
 4.02 Intr -  72284  72141  144  0  0   22   63    90 0.048   0.15
 4.01 Init -  77471  77423   49  2  1   72  105    68 0.543   8.13
 4.00 Prom -  96349  96310   40                              -5.16

 5.03 PlyA -  98379  98374    6                               1.05
 5.02 Term - 100765  99998  768  1  0  115   53  1623 0.930 154.91
 5.01 Init - 106297 105524  774  1  0   86  110  1957 0.994 192.40
 5.00 Prom - 107073 107034   40                              -6.66

 6.00 Prom + 114546 114585   40                              -4.26
 6.01 Sngl + 118523 119137  615  1  0   79   53   238 0.056  14.93
 6.02 PlyA + 120616 120621    6                               1.05

 7.13 PlyA - 122729 122724    6                               1.05
 7.12 Term - 126797 126697  101  0  2  112   50    70 0.641   3.89
 7.11 Intr - 131577 131555   23  2  2  105  119     6 0.525   2.59
 7.10 Intr - 136267 136254   14  1  2  105   95    16 0.306  -2.42
 7.09 Intr - 136632 136520  113  1  2   39  116    73 0.792   5.30
 7.08 Intr - 136897 136741  157  1  1   71   20    85 0.437  -0.42
 7.07 Intr - 147847 147755   93  1  0   82   81    79 0.710   6.76
 7.06 Intr - 150492 150307  186  0  0  -15   86   117 0.248   1.09
 7.05 Intr - 164149 164034  116  2  2   82   88    29 0.048   2.47
 7.04 Intr - 168890 168723  168  0  0  106  111   -30 0.045   1.02
 7.03 Intr - 174521 174438   84  0  0   71   74    69 0.123   3.59
 7.02 Intr - 178795 178734   62  0  2   71   94    -5 0.067  -3.22
 7.01 Init - 179187 179090   98  0  2   55   88    76 0.159   4.08
 7.00 Prom - 179493 179454   40                              -2.56

 8.04 PlyA - 179733 179728    6                               1.05
 8.03 Term - 187264 187187   78  1  0   83   50    90 0.881   2.46
 8.02 Intr - 188483 188451   33  2  0  108  116    23 0.801   5.52
 8.01 Init - 189897 189814   84  0  0   99   50    30 0.788   1.12

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  38085  37990   96  2  0   82   96    36 0.844   2.92
S.002 Init -  43128  43058   71  0  2   81   70    99 0.888   5.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_1|163_aa
TAVCAGQNETVKALLGKGAQVNAVNQNGSTPLHHAASKNRHEIALMLLEGGANPDGKDHY
EATAKHQATAKGNFKMIHILLYYKASTIIQDTEGRFSDYKTGAHNWKTATVLLLILILSV
FRFQARILAVTTRISSTPVEPVVFRLNSSKSLRYVYKQREDDA

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_1|492_bp
actgctgtttgtgctggccagaatgagactgtaaaagcccttctgggaaaaggtgctcaa
gtgaatgctgtcaatcaaaatggctctactcccctacatcatgcagcttccaaaaacagg
catgagattgctctcatgttactagaaggtggggctaatccagatggtaaggatcattat
gaggctacagcaaagcaccaggccacagccaagggtaacttcaagatgattcatatcctt
ctgtactacaaagcatccacaatcatccaagacactgagggaagattttcagactacaag
actggtgcccacaactggaaaactgctactgtgttgctgcttatcctgatactttccgta
ttcagatttcaggcaagaattctagcagtgaccaccagaatttccagtacaccagtagaa
ccagttgttttcaggctgaactcctctaagagtttaagatatgtatacaaacagagggaa
gatgatgcctga

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_2|289_aa
MASLEVSRSPRRSRRELEVRSPRQNKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEI
IIIDDGSPDGTRDVAEQLEKIYGSDRILLRPREKKLGLANLFYRKQKEGNFDIVSGTRYK
GNGGVYGWDLKRKIIRLYRKEVLEKLIEKCVSKGYVFQMEMIVRARQLNYTIGEHPRPRR
EPESAEPERDEAPGAPSPLPPPPCRRHPPAAAAAVRPPSTPAPRAPRGRVKPGPGRGRIV
VRIAALQPHTRSFAHPGADGSPVPARTATRLCSGGPGASSCSPTPFSAL

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_2|870_bp
atggcctccttggaagtcagtcgtagtcctcgcaggtctcggcgggagctggaagtgcgc
agtccacgacagaacaaatattcggtgcttttacctacctacaacgagcgcgagaacctg
ccgctcatcgtgtggctgctggtgaaaagcttctccgagagtggaatcaactatgaaatt
ataatcatagatgatggaagcccagatggaacaagggatgttgctgaacagttggagaag
atctatgggtcagacagaattcttctaagaccacgagagaaaaagttgggactagctaat
ttattctacaggaagcaaaaggagggtaattttgatattgtctctggaactcgctacaaa
ggaaatggaggtgtatatggctgggatttgaaaagaaaaataatcagattataccgaaaa
gaagttctagagaaattaatagaaaaatgtgtttctaaaggctacgtcttccagatggag
atgattgttcgggcaagacagttgaattatactattggcgagcacccgcggccgcggcgc
gagccggagtccgccgagccggagcgcgacgaggccccgggcgcgccctccccgctgccg
ccaccgccgtgccgccgccatccgcccgccgccgccgccgctgtccggcccccgagcacg
ccggccccgcgcgcgcctcgaggccgagtcaagcctggccccgggcgcgggcgcattgtt
gttcgcatcgccgccctccagccgcacacacgctcctttgcacaccccggcgccgacggg
tcccccgtcccggcacggaccgctacccgactctgctccggaggtccaggcgcctcctcc
tgcagcccgacccccttctccgccctgtga

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_3|460_aa
MASREEVLALQAEVAQREEELNSLKQKLASALLAEQEPQPERLVPVSPLPPKAALSRDEI
LRYSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMS
NLARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQALTPATALDLVRRYDVVADCS
DNVPTRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCIFPQPPPAETVTNCA
DGGVLGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGHFRSIRLRSRRLDCAAC
GERPTVTDLLDYEAFCGSSATDKCRSLQLLSPEERVSVTDYKRLLDSGAFHLLLDVRPQV
EVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVICKLGNDSQK
AVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFPQY

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_3|1383_bp
atggcttcccgggaggaggtactcgccttacaagctgaagttgcccaacgtgaggaggaa
ttgaattcgctgaagcagaagctggcgtcggctcttttggctgagcaggaaccgcagcca
gaacggctggttccggtgtcgccgctgccgccgaaggccgctctgtcccgagatgagatt
ctgcgctatagccggcagctagtgctgcccgagctgggcgtgcacggacagctgcgcctg
gggaccgcgtgcgtgctaatcgtgggctgcggtgggctcggctgtccactagcgcagtac
ttggcagcggccggcgtgggccgccttggccttgtggactatgacgtggtagagatgagc
aacctggcccgccaagtgctgcatggcgaggcactggctggccaggccaaggccttttcg
gccgccgcctcgctgcgccgcctcaattcggcagtggaatgcgtgccgtacactcaggcc
cttacgccagccactgccctagacctggtccgccgatatgatgtggtggctgactgctcg
gacaacgtgcccactcgctacctggttaatgacgcatgtgtgctggcgggtcggcccctc
gtgtctgccagtgccttgcgcttcgagggccaaatcacagtctaccattatgacggtggc
ccttgctatcgctgcatattcccccaaccacccccagcggagacagtgaccaactgcgcg
gacggcggggtgctcggtgtcgttaccggggtcctgggctgcctgcaggccttggaagtg
ctgaaaatcgctgcgggtctgggcccctcttacagtggcagcttgttgctctttgatgcc
ctgagagggcatttccgctctattcggctgcggagccgcaggctcgactgtgcagcttgc
ggggaacggcccactgtgactgatctgctggactatgaagccttctgtggctcctcagcc
actgataaatgccgctccctgcaactactgagcccagaggagcgtgtttctgtcaccgac
tataagcgactgctggattctggggcattccacctgttgctggacgtcaggcctcaggtg
gaggtggacatttgtcgtttgcctcatgccctacacatccctctgaaacatttggaacgc
agggatgcggagagcctgaaactcttaaaagaagcaatctgggaagagaagcagggcaca
caagaaggggctgctgtccccatttatgtgatttgcaaactgggaaatgactcacagaaa
gccgtgaagatcctccagtccttatcagcagctcaagagttagaccctttaacagttcgg
gatgttgtggggggcctcatggcctgggctgccaaaatcgatggaacatttccacagtac
tga

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_4|122_aa
MARPEKCIPAVLKELTEPPLPNLQAMGLDGADPIYPTPSPDPGMGLWLRPGQSEYPSPAR
YSVPNWPGGGGLSAEQQGGSVPLVDLQTGTDVRLYGQDAQSVLFVVVSLCVRHQYLTICN
EH

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_4|369_bp
atggcccgacctgagaaatgcatccctgccgtgctgaaggagctcaccgaaccccctctc
cccaacttgcaggccatgggactggatggtgctgaccccatttacccaacccccagtcca
gatccagggatgggcctatggctgaggcctggccaatcagaataccccagccctgctcgc
tacagtgtgcccaattggcctgggggtggggggttgtctgctgagcagcagggcggctct
gtccctctggtggacctgcagactgggacagatgtaaggttgtatggacaagacgcccag
tctgtcttgttcgtggttgtgtccctctgtgtcaggcatcagtacctgaccatttgtaat
gagcattaa

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_5|513_aa
MTLLPGDNSDYDYSALSCTSDASFHPAFLPQRQAIKGAFYRRAQRLRPQDEPRQGCQPED
RRRRIIINVGGIKYSLPWTTLDEFPLTRLGQLKACTNFDDILNVCDDYDVTCNEFFFDRN
PGAFGTILTFLRAGKLRLLREMCALSFQEELLYWGIAEDHLDGCCKRRYLQKIEEFAEMV
EREEEDDALDSEGRDSEGPAEGEGRLGRCMRRLRDMVERPHSGLPGKVFACLSVLFVTVT
AVNLSVSTLPSLREEEEQGHCSQMCHNVFIVESVCVGWFSLEFLLRLIQAPSKFAFLRSP
LTLIDLVAILPYYITLLVDGAAAGRRKPGAGNSYLDKVGLVLRVLRALRILYVMRLARHS
LGLQTLGLTARRCTREFGLLLLFLCVAIALFAPLLYVIENEMADSPEFTSIPACYWWAVI
TMTTVGYGDMVPRSTPGQVVALSSILSGILLMAFPVTSIFHTFSRSYLELKQEQERVMFR
RAQFLIKTKSQLSVSQDSDILFGSASSDTRDNN

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_5|1542_bp
atgaccctcttaccgggagacaattctgactacgactacagcgcgctgagctgcacctcg
gacgcctccttccacccggccttcctcccgcagcgccaggccatcaagggcgcgttctac
cgccgggcgcagcggctgcggccgcaggatgagccccgccagggctgtcagcccgaggac
cgccgccgtcggatcatcatcaacgtaggcggcatcaagtactcgctgccctggaccacg
ctggacgagttcccgctgacgcgcctgggccagctcaaggcctgcaccaacttcgacgac
atcctcaacgtgtgcgatgactacgacgtcacctgcaacgagttcttcttcgaccgcaac
ccgggggccttcggcactatcctgaccttcctgcgcgcgggcaagctgcggctgctgcgc
gagatgtgcgcgctgtccttccaggaggagctgctgtactggggcatcgcggaggaccac
ctggacggctgctgcaagcgccgctacctgcagaagattgaggagttcgcggagatggtg
gagcgggaggaagaggacgacgcgctggacagcgagggccgcgacagcgagggcccggcc
gagggcgagggccgcctggggcgctgcatgcggcgactgcgcgacatggtggagaggccg
cactcggggctgcctggcaaggtgttcgcctgcctgtcggtgctcttcgtgaccgtcacc
gccgtcaacctctccgtcagcaccttgcccagcctgagggaggaggaggagcagggccac
tgttcccagatgtgccacaacgtcttcatcgtggagtcggtgtgcgtgggctggttctcc
ctggagttcctcctgcggctcattcaggcgcccagcaagttcgccttcctgcggagcccg
ctgacgctgatcgacctggtggccatcctgccctactacatcacgctgctggtggacggc
gccgccgcaggccgtcgcaagcccggcgcgggcaacagctacctggacaaggtggggctg
gtgctgcgcgtgctgcgggcgctgcgcatcctgtacgtgatgcgcctggcgcgccactcc
ctggggctgcagacgctggggctcacggcccgccgctgcacccgcgagttcgggctcctg
ctgctcttcctctgcgtggccatcgccctcttcgcgcccctgctctacgtcatcgagaac
gagatggccgacagccccgagttcaccagcatccctgcctgctactggtgggctgtcatc
accatgacgacggtgggctatggcgacatggtccccaggagcaccccgggccaggtagtg
gccctgagcagcatcctgagcggcatcctgctcatggccttcccagtcacctccatcttc
cacaccttctcccgctcctacctggagctcaagcaggagcaagagagggtgatgttccgg
agggcgcagttcctcatcaaaaccaagtcgcagctgagcgtgtcccaggacagtgacatc
ttgttcggaagtgcctcctcggacaccagagacaataactga

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_6|204_aa
MRPRRGHRGGERPGLRIPVTPWDEPKPDPHLGRNKRAPRRHAPAVTPESSVALASPQAGF
EAPAGSSGPRPRAAAPEPEFAGSGSGSRFGGARRGCSAQSSHLKFPSRRPRLGVGPAAAS
VPPGCPRVRGEDARGAWKSPGEPALPPGAAAKLRSRGPAQLPPSEPRPPRLCLPVPAGLR
VRRERGAAAAEGGSEAGGGTEGGD

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_6|615_bp
atgcgcccccgccggggtcaccgcggcggcgaacgtcccggacttcgcatcccggtgacc
ccttgggatgaaccgaagccggacccgcaccttggccgtaacaagcgcgctccacgccgc
cacgcaccagcggtgactcccgagtcctctgtcgccctggcctccccgcaggcgggtttc
gaggcccccgcagggagttcagggccacggccacgtgcagccgcccccgagcccgagttt
gcaggctcggggtccggttcgcgcttcggtggcgcccggcgaggctgcagcgcgcaaagt
tcccacctcaagttcccgtcgcggcgtccccgcctcggagttggcccggccgcggcttcc
gttccccccggctgcccacgggtccggggcgaggacgcgagaggggcctggaagtcgccc
ggggagcccgctctgcctcccggagccgccgccaaacttcggtcccggggcccggctcag
ctcccgccctcggagccacggccgccccgtctctgcctcccggtccccgccgggctccga
gtgcgccgggagcgcggcgcagcagccgccgagggagggagcgaggcaggaggcgggacg
gagggaggggactga

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_7|404_aa
MFLHQGHSFSKCEHPPQARQEVLETGYRDEQDRSPTCACLSFPLLELMEPHTTEQVNPRA
GLTCGGKDGMIYQRNTQAQISGQAPALLPRRSSVEENTVVTVTYEAPPLYPPSGHVSIHG
PSQQRVARLPLLIHQAPDNNDKLGGEGQNYMKVLESQQKQASSNEELILGRKERQENTRK
GKSAALEKGIDLTGSYRHCQAVYDGVTKRTVQTASKANAGHSEPDCVSLEPALPLDSKLL
ICKAPGFPQCINKPDESSWTKALSEKEAKTLFSLGTAINSWISSRFGFCWKNSEKGEGGK
RVGARRGMAVGVELALKMGPLVHQTWPVYWIEQSSPKEIDFSAFECDLIGNKVFADLTKV
YERSLPVSLFPGTKQGGKIPEHSTQLSTALRLAAASEINGPVSC

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_7|1215_bp
atgtttctgcatcagggccactctttcagcaagtgtgagcacccaccacaggccaggcaa
gaggtgctggagacaggataccgtgatgaacaggacaggagccccacctgtgcctgtttg
tccttcccccttttggaactgatggagcctcacaccacagaacaagtcaaccctagagct
gggttgacttgtgggggaaaggacggcatgatctaccagcgcaacacgcaggctcagatt
tcaggccaggcccctgccctattacccaggaggtcttcagtggaagagaatactgttgtt
actgtgacatatgaagcaccccctctttacccaccctctggacacgtttcaatccatggt
cccagccagcagagggtagcccggcttcctctactcatccatcaggctccagataacaat
gataaactcgggggtgaggggcaaaactacatgaaggtactggaaagccaacaaaagcag
gcaagctctaacgaagagctgatacttggaagaaaggaaaggcaagagaacaccaggaag
ggaaagagcgcagctcttgaaaagggtatcgacctcactgggagttacaggcactgccag
gcggtttatgatggtgtgacaaagcgaacggttcagacggccagcaaggcaaacgcagga
cactcggagcctgactgcgtgagcttggaaccagcactgccacttgacagcaagcttctt
atctgcaaagctcctggcttccctcaatgtatcaacaagcctgatgaatccagctggact
aaggcactctctgaaaaagaggccaagacactgttcagcttaggcacagctataaacagc
tggatttcatcaaggtttgggttttgctggaagaattcagaaaaaggagaagggggcaag
agagttggtgcacgcaggggcatggctgtgggtgtggaactagcgttgaagatgggcccg
cttgttcatcagacctggcctgtgtactggattgaacagagttcccccaaagagatagat
ttcagtgcctttgaatgtgaccttattggaaacaaggtctttgcagatttaaccaaggtc
tatgagagaagccttcccgtgtcactctttcctggaacgaaacagggtggcaaaatccca
gagcattccactcagctgtcgacagccctgcgactggctgcagcctcggaaataaatggt
cccgtcagctgctag

>gi568815578r:50904042_51110338|GENSCAN_predicted_peptide_8|64_aa
MKRGVLDLVQERIQGKSIEYSASKFIRNPPPLNKEKVWKGCCEDECDAVCRSPTQGKCSL
SSAE

>gi568815578r:50904042_51110338|GENSCAN_predicted_CDS_8|195_bp
atgaagagaggggtcttggaccttgtgcaagaaagaattcagggcaagtccatagagtac
agtgcaagcaagtttattaggaacccaccaccactgaacaaagaaaaagtctggaagggc
tgctgtgaggacgagtgtgatgctgtttgtaggagcccgacacaagggaagtgctcgctg
agctctgcagaatga