GENSCAN 1.0	Date run:  8-Nov-116	Time: 13:33:25

Sequence gi568815578f:46625040_46833831 : 208792 bp : 45.83% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12840  13035  196  1  1  112  100    59 0.647   7.97
 1.02 Term +  13433  13493   61  2  1   78   48    61 0.394  -1.62
 1.03 PlyA +  14422  14427    6                              -0.45

 2.04 PlyA -  15525  15520    6                               1.05
 2.03 Term -  15896  15747  150  2  0   38   37   130 0.010   0.81
 2.02 Intr -  26451  26272  180  0  0   98   92   319 0.917  33.36
 2.01 Init -  27148  27113   36  1  0   64   67    14 0.246  -3.09
 2.00 Prom -  30683  30644   40                              -0.96

 3.00 Prom +  37809  37848   40                              -3.16
 3.01 Init +  39836  39907   72  1  0   96   19    67 0.155   1.67
 3.02 Term +  55354  55512  159  0  0   38   48   149 0.170   3.84
 3.03 PlyA +  56293  56298    6                               1.05

 4.03 PlyA -  56662  56657    6                               1.05
 4.02 Term -  62192  61714  479  0  2   73   43   334 0.986  22.40
 4.01 Init -  64375  64093  283  1  1  106   95   433 0.615  43.00
 4.00 Prom -  66057  66018   40                              -6.06

 5.00 Prom +  71093  71132   40                              -6.06
 5.01 Init +  72997  73033   37  0  1   94   81    16 0.093   1.68
 5.02 Intr +  84516  84701  186  1  0  116  106    20 0.443   6.26
 5.03 Intr +  89260  89331   72  2  0   79   59    45 0.106   0.08
 5.04 Intr + 100002 101285 1284  1  0  120  111   798 0.876  72.60
 5.05 Intr + 101825 101947  123  0  0   67   97   157 0.967  15.06
 5.06 Intr + 104314 104449  136  2  1  110   70   144 0.998  14.43
 5.07 Term + 108717 108795   79  0  1  112   55   114 0.995   7.74
 5.08 PlyA + 111112 111117    6                               1.05

 6.04 PlyA - 111142 111137    6                               1.05
 6.03 Term - 119016 118531  486  0  0   76   41   253 0.810  14.10
 6.02 Intr - 121799 121678  122  0  2    3   68    90 0.252  -1.29
 6.01 Init - 127030 126604  427  1  1   57   53   238 0.325  13.67
 6.00 Prom - 132844 132805   40                              -4.06

 7.06 PlyA - 133447 133442    6                               1.05
 7.05 Term - 138154 138062   93  1  0   73   34    93 0.478   0.23
 7.04 Intr - 139837 139799   39  1  0  112   98   -16 0.295   0.22
 7.03 Intr - 143033 142967   67  1  1   43   99    88 0.537   4.31
 7.02 Intr - 145913 145822   92  2  2   40   62    64 0.167  -2.21
 7.01 Init - 148210 148151   60  1  0   90   80    23 0.492   2.97
 7.00 Prom - 150614 150575   40                              -4.56

 8.00 Prom + 153878 153917   40                              -4.46
 8.01 Init + 155470 155575  106  0  1   94   76    18 0.400   1.58
 8.02 Intr + 158789 158973  185  0  2   84   98    97 0.975   9.81
 8.03 Intr + 160527 160577   51  2  0  101   55    33 0.103   0.40
 8.04 Intr + 167504 167746  243  1  0   89   52    95 0.082   3.69
 8.05 Term + 168895 168954   60  0  0   74   42    42 0.050  -4.00
 8.06 PlyA + 169147 169152    6                               1.05

 9.06 PlyA - 169380 169375    6                               1.05
 9.05 Term - 170661 170510  152  1  2   87   47    67 0.179   0.57
 9.04 Intr - 176678 176578  101  1  2   77   81    86 0.618   6.55
 9.03 Intr - 185144 185102   43  0  1  126   80    10 0.565   1.30
 9.02 Intr - 186617 186448  170  1  2   87   44   134 0.057   8.49
 9.01 Init - 203117 203044   74  2  2   64   98    34 0.043   2.54

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  98179  98224   46  0  1   91   94    17 0.937   3.68


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_1|85_aa
XGDSGGHTTPGEAGSFSRKGKPGSGEVQVPYQEKSQEQEAVDVWFSGGENVLSEQASVSP
INPKESKGKAAVLTAADRGAVSSVQ

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_1|258_bp
ngaggtgattcagggggacataccaccccaggtgaggcaggctccttctctaggaaggga
aagccagggtctggagaagtacaggttccatatcaagaaaaaagtcaggagcaggaagcg
gttgatgtctggtttagtgggggtgagaatgtcctctcagaacaggcctcagtctcccct
atcaaccccaaagaaagcaagggaaaggcggctgtcctgactgctgcggacagaggggcc
gtcagctccgtccagtga

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_2|121_aa
MGICCTDYFVIQALSRRRGQAGQSRAGPYRQAIALMAALAAAAKKVWSARRLLVLLFTPL
ALLPVVFALPPKVCKQAGVTSSDAAGSKIVFPDPTQQDSALWTDEQNSLTPPDLEDTKSA
P

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_2|366_bp
atggggatttgttgcacagattatttcgtcatccaggctttaagccggcgccggggccag
gcggggcagtcccgggccggcccgtaccgccaggcgatcgcgctgatggcggcgctggca
gcagcggccaagaaggtgtggagcgcgcggcggctgctggtgctgctgttcacgccgctc
gcgctgctgccggtggtcttcgccctcccgcccaaggtgtgtaaacaggctggcgtgact
tccagtgatgcagcagggagcaagatcgtgtttcctgacccaactcaacaggacagtgct
ctctggactgatgagcagaattctctgacaccgccagaccttgaagacacgaagtcagca
ccctag

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_3|76_aa
MTGLSIIKELECRDKVTASQQGLKCSNCSTYLLIWMLVVDMDVRPRSLKEAPIAPEAGRV
VSSQLLWSAPPGINSQ

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_3|231_bp
atgacaggtcttagcatcatcaaggaactggagtgcagagacaaggtcacagccagccag
caaggactcaaatgctccaactgctccacgtacctccttatatggatgcttgtggtggac
atggatgtgcgacccagatcccttaaggaagcacctattgccccagaggcagggagagtg
gtcagcagtcagctcctgtggtcagctcctccagggatcaactcacagtag

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_4|253_aa
MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIK
HRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSV
TVRDYIQSTMETEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIV
LIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSYSTSSKKARPVLKKLD
EVRLRGRKRSMVG

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_4|762_bp
atggcggcggccagagctactacgccggccgatggcgaggagcccgccccggaggctgag
gctctggccgcagcccgggagcggagcagccgcttcttgagcggcctggagctggtgaag
cagggtgccgaggcgcgcgtgttccgtggccgcttccagggccgcgcggcggtgatcaag
caccgcttccccaagggctaccggcacccggcgctggaggcgcggcttggcagacggcgg
acggtgcaggaggcccgggcgctcctccgctgtcgccgcgctggaatatctgccccagtt
gtcttttttgtggactatgcttccaactgcttatatatggaagaaattgaaggctcagtg
actgttcgagattatattcagtccactatggagactgaaaaaactccccagggtctctcc
aacttagccaagacaattgggcaggttttggctcgaatgcacgatgaagacctcattcat
ggtgatctcaccacctccaacatgctcctgaaaccccccctggaacagctgaacattgtg
ctcatagactttgggctgagtttcatttcagcacttccagaggataagggagtagacctc
tatgtcctggagaaggccttcctcagtacccatcccaacactgaaactgtgtttgaagcc
tttctgaagagctactccacctcctccaaaaaggccaggccagtgctaaaaaaattagat
gaagtgcgcctgagaggaagaaagaggtccatggttgggtag

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_5|638_aa
MAEGERGADVPHGLGAWLADVALAALRAGGQGRRDRGGGGPESLSGGSGVGDSGGGCAPG
PSAPPARRRVPLAMGPRNLLIDWIWIMDTTLGLGTEGGGHSPPVLPLCASVSLLGGLTFG
YELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNL
VLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGI
TVGILLSYALNYALAGTPWGWRHMFGWATAPAVLQSLSLLFLPAGTDETATHKDLIPLQG
GEAPKLGPGRPRYSFLDLFRARDNMRGRTTVGLGLVLFQQLTGQPNVLCYASTIFSSVGF
HGGSSAVLASVGLGAVKVAATLTAMGLVDRAGRRALLLAGCALMALSVSGIGLVSFAVPM
DSGPSCLAVPNATGQTGLPGDSGLLQDSSLPPIPRTNEDQREPILSTAKKTKPHPRSGDP
SAPPRLALSSALPGPPLPARGHALLRWTALLCLMVFVSAFSFGFGPVTWLVLSEIYPVEI
RGRAFAFCNSFNWAANLFISLSFLDLIGTIGLSWTFLLYGLTAVLGLGFIYLFVPETKGQ
SLAEIDQQFQKRRFTLSFGHRQNSTGIPYSRIEISAAS

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_5|1917_bp
atggcagaaggtgaaaggggagcagacgtgccacatggcctcggggcctggctggccgac
gtggcgttggcggcgctgcgcgcgggagggcagggcaggagggacagaggcgggggcggg
ccggaaagtttgtccggcggcagcggcgttggggactccggcgggggatgcgcgcccggc
ccctcagcgcccccagcacgccgccgagtcccgctcgccatggggcccaggaatttgctg
attgattggatctggatcatggacaccaccctggggctgggcactgagggtggaggccac
tccccacctgtcctgcctttgtgtgcctctgtgtctttgctgggtggcctgacctttggt
tatgaactggcagtcatatcaggtgccctgctgccactgcagcttgactttgggctaagc
tgcttggagcaggagttcctggtgggcagcctgctcctgggggctctcctcgcctccctg
gttggtggcttcctcattgactgctatggcaggaagcaagccatcctcgggagcaacttg
gtgctgctggcaggcagcctgaccctgggcctggctggttccctggcctggctggtcctg
ggccgcgctgtggttggcttcgccatttccctctcctccatggcttgctgtatctacgtg
tcagagctggtggggccacggcagcggggagtgctggtgtccctctatgaggcaggcatc
accgtgggcatcctgctctcctatgccctcaactatgcactggctggtaccccctgggga
tggaggcacatgttcggctgggccactgcacctgctgtcctgcaatccctcagcctcctc
ttcctccctgctggtacagatgagactgcaacacacaaggacctcatcccactccaggga
ggtgaggcccccaagctgggcccggggaggccacggtactcctttctggacctcttcagg
gcacgcgataacatgcgaggccggaccacagtgggcctggggctggtgctcttccagcaa
ctaacagggcagcccaacgtgctgtgctatgcctccaccatcttcagctccgttggtttc
catgggggatcctcagccgtgctggcctctgtggggcttggcgcagtgaaggtggcagct
accctgaccgccatggggctggtggaccgtgcaggccgcagggctctgttgctagctggc
tgtgccctcatggccctgtccgtcagtggcataggcctcgtcagctttgccgtgcccatg
gactcaggcccaagctgtctggctgtgcccaatgccaccgggcagacaggcctccctgga
gactctggcctgctgcaggactcctctctacctcccattccaaggaccaatgaggaccaa
agggagccaatcttgtccactgctaagaaaaccaagccccatcccagatctggagacccc
tcagcccctcctcggctggccctgagctctgccctccctgggccccctctgcccgctcgg
gggcatgcactgctgcgctggaccgcactgctgtgcctgatggtctttgtcagtgccttc
tcctttgggtttgggccagtgacctggcttgtcctcagcgagatctaccctgtggagata
cgaggaagagccttcgccttctgcaacagcttcaactgggcggccaacctcttcatcagc
ctctccttcctcgatctcattggcaccatcggcttgtcctggaccttcctgctctacgga
ctgaccgctgtcctcggcctgggcttcatctatttatttgttcctgaaacaaaaggccag
tcgttggcagagatagaccagcagttccagaagagacggttcaccctgagctttggccac
aggcagaactccactggcatcccgtacagccgcatcgagatctctgcggcctcctga

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_6|344_aa
MGGVPEEQIRKSYQLRGEWKWMASKQQMPASVTPPLTESLWDSLKCMSDTVRKRQENEKK
TWMFSIFELMQAGDNSCQSCKAEHPEKWNRRIQAPVEGINESRGVWMGLFLSSVWLKLQT
PGVTQWVASTLPSTSAGIAKSNGSDGDDGDGGDDEKGQILQSLQDLLTDWMWECKRGVRG
DCELLSQFSFVPENPMILDQVMTKTTNKTPGEHEGRATLQGTSRSDSLSGSVVTSDSPIW
GGVQAELDTGCSVATGNVQSDFQHLFPLLLPTCLMVSTSSPLSHRVWGDWPLYWVEQCHK
LHVYLAPVNVTLFGNKILADVIKSHWIRVGPPSNDLGLYKKREM

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_6|1035_bp
atgggtggggtccctgaggagcagatccgtaagagctatcagcttagaggcgaatggaag
tggatggcgtccaagcaacagatgcccgcttctgtgactccaccccttacggaaagtcta
tgggactctctgaaatgtatgagtgatactgttagaaagcggcaagaaaatgaaaagaaa
acgtggatgttttccatatttgagttgatgcaggctggagacaacagctgccagagctgc
aaggcagaacaccctgagaagtggaaccggaggatccaggcgcctgttgaagggataaat
gagagccgtggcgtgtggatgggactctttctgtcttccgtttggctgaagctccaaacg
ccaggagtaacccagtgggtagcaagcacccttccctccacctctgcaggaattgcaaaa
agcaatgggagtgatggtgatgatggtgatggaggagatgatgagaaaggtcaaattctg
cagagcctgcaggatttgctaacagattggatgtgggagtgcaaaagaggagttaggggt
gactgcgagctcctctcgcagttcagttttgtgcccgagaaccccatgatcctcgatcag
gtcatgaccaagaccacaaataaaacccctggtgaacacgagggcagggccacactgcag
ggcaccagccggagtgacagcctgtctggctcggtagtgactagtgactcccccatctgg
gggggtgtgcaagcggagctggacacaggatgcagtgtggccacgggaaatgtgcagagt
gatttccagcatctctttcctcttctcttgccaacttgccttatggtgtccacttcttcc
ccactcagccatagggtctggggtgattggcccctgtactgggttgaacagtgtcataaa
cttcatgtctacctggcccctgtgaatgtgactttatttggaaataagattttggcagat
gtaatcaagtcacactggattcgggtgggccctccatccaatgacttgggtctttataag
aagagggaaatgtaa

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_7|116_aa
MPLSNEQEHLSASFSTCGVQIFPTQQAYFCCRDFVCAVLVTWNILFLTFLRSLSAKRNQS
TPTHGSLLVEPMQRTTLQLKITCSGKVLGRYVNCISSCELLSKDRKALLWITFCAF

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_7|351_bp
atgcctctgagcaatgagcaagagcatctctccgccagcttttccacctgcggtgtccag
atctttccaacacagcaggcatacttctgctgcagggacttcgtctgtgctgttctggtc
acctggaatatacttttcctcaccttcctcaggtcactatcggccaaacgcaaccagagc
acacccacccatgggagcctgttggtggagcccatgcagaggacaactctccagttaaaa
atcacttgctcagggaaggtactgggtcgctatgtcaactgtatttcttcttgtgagctg
ctgtcaaaagatcggaaagctctgctctggatcaccttctgtgccttctga

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_8|214_aa
MERTIPPFPWGGTAQEGFGLDTRARGLRFQEACSTVSIPSAISINGFPSPISINPKVFAM
TSRAPNKPKRFCPLTLLSHPRSIHPTPVTSQTTFPNTAPGATGGLFTLAAVAPASTLPSE
LPMATCFSSFSSGSDVTTSEKALLTTLSKMHFAPQTSKFSLYSFPPWHQHYLIIFLSVAS
GVLVDDLSTPTGGKRLLKCHPVKKIPLTTHKNMQ

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_8|645_bp
atggagaggaccattcccccttttccatggggtggcactgcccaagagggcttcgggcta
gatacccgggcgcgcggcttgcgttttcaggaagcttgtagcacagtcagcatcccatct
gcaatcagcatcaatggcttcccatctccaatcagcatcaatcctaaggtctttgccatg
acttctagggctccaaataaaccaaagcgcttttgtccattgaccctactgagccatcct
cgttccatccaccccaccccagttaccagtcagacaacatttcctaacacagctccagga
gccaccgggggcttgttcacgcttgctgctgtggctccagcaagcacccttccttcagag
cttcccatggctacctgcttctcgtccttcagctctgggtcagacgtcaccacctcagag
aaggccttgttgaccaccttgtctaagatgcactttgcccctcagacatctaaattttca
ctctactcatttcctccatggcatcagcattatctgatcattttcttgtcagttgcatct
ggcgtgcttgttgatgatctgtccaccccaaccggaggaaaaagacttctcaaatgtcac
cctgtcaagaagatccctctgaccacccataagaacatgcagtaa

>gi568815578f:46625040_46833831|GENSCAN_predicted_peptide_9|179_aa
MAGNQHDMSLSSWCAQSRGVQALKSPRRRLWCLLSAPRRHLRRAGVPGPLSNLGAANTGP
IVAPASPAGSCARAAICERGSEQADRAMFRQHLTNSFLPHGCKAAAITPNITPDVEAERK
QEEMKSNDSYPAPYMCPITRIYSLHHLTITTNRFLNGAVIGRLDETICQCADSPCIAGH

>gi568815578f:46625040_46833831|GENSCAN_predicted_CDS_9|540_bp
atggctggaaaccagcacgacatgtctttgtcctcgtggtgtgcacagtctagaggtgtt
caggcactcaaaagtccccggaggagactttggtgcctgctgtccgccccccggcgccat
ctgcgccgcgcaggtgtgcccggccccctgtccaacctgggggctgcgaacactgggccg
attgtggcccccgcgagcccggcgggcagctgcgcccgagctgccatctgcgagcgcggc
tctgagcaggcagatcgtgccatgttccggcagcatttgacaaacagcttcttgcctcat
ggttgcaaggcggctgctataactccaaacatcacacctgatgtcgaggcagaaagaaag
caggaggaaatgaagagtaatgacagttaccctgcaccgtacatgtgcccaattacgagg
atttacagcttacatcatctaactataaccaccaataggtttctcaatggggctgtcatt
ggccgtttggatgaaacaatttgtcagtgtgctgacagtccatgcattgcaggacattga