GENSCAN 1.0	Date run:  8-Nov-116	Time: 13:31:03

Sequence gi568815578r:661029_865774 : 204746 bp : 48.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    234    229    6                              -1.75
 1.02 Term -   3433   2643  791  2  2  125   52  1429 0.938 136.48
 1.01 Init -  14573  14441  133  2  1  100  113   143 0.980  18.30
 1.00 Prom -  14811  14772   40                              -2.36

 2.00 Prom +  17615  17654   40                              -2.86
 2.01 Init +  20500  20576   77  0  2   58  119    54 0.602   6.06
 2.02 Intr +  31688  31792  105  2  0   95   95    67 0.630   7.43
 2.03 Term +  46340  46370   31  2  1  116   48    28 0.014  -1.07
 2.04 PlyA +  50411  50416    6                               1.05

 3.06 PlyA -  51368  51363    6                               1.05
 3.05 Term -  61680  61501  180  0  0   96   51    60 0.027   0.71
 3.04 Intr -  67291  67172  120  1  0   85   47    77 0.208   3.99
 3.03 Intr -  67776  67569  208  2  1   76   46   110 0.423   4.68
 3.02 Intr -  73329  73246   84  2  0   86   31    79 0.426   0.94
 3.01 Init -  74908  74901    8  1  2  114   57     0 0.374  -0.00
 3.00 Prom -  91669  91630   40                              -3.06

 4.05 PlyA -  91691  91686    6                               1.05
 4.04 Term - 100210  99998  213  1  0  137   48   250 0.997  23.13
 4.03 Intr - 100796 100658  139  1  1  138   56   120 0.891  14.27
 4.02 Intr - 102975 102470  506  0  2  132   69   539 0.987  48.18
 4.01 Init - 104746 104180  567  1  0  111   80   877 0.998  84.27
 4.00 Prom - 112255 112216   40                              -4.96

 5.03 PlyA - 115145 115140    6                               1.05
 5.02 Term - 115915 115681  235  0  1  120   49   168 0.957  11.89
 5.01 Init - 135750 135578  173  0  2  101   84   105 0.126  10.32
 5.00 Prom - 152443 152404   40                              -2.16

 6.00 Prom + 152990 153029   40                              -4.26
 6.01 Init + 155329 155380   52  0  1   57  110    26 0.486   3.03
 6.02 Intr + 163889 164062  174  0  0   54   70    82 0.217   2.91
 6.03 Intr + 172711 172923  213  2  0   87   94   125 0.780  11.69
 6.04 Term + 173299 173474  176  2  2  108   43    16 0.777  -2.98
 6.05 PlyA + 174994 174999    6                               1.05

 7.05 PlyA - 176913 176908    6                               1.05
 7.04 Term - 177409 177219  191  2  2  107   41    37 0.361  -1.49
 7.03 Intr - 178978 178586  393  2  0   -1   98   411 0.189  27.83
 7.02 Intr - 181121 180853  269  1  2   53   97   107 0.235   5.28
 7.01 Init - 181537 181479   59  1  2   93   75    47 0.911   3.20
 7.00 Prom - 182479 182440   40                              -7.06

 8.00 Prom + 183244 183283   40                             -15.08
 8.01 Sngl + 183777 184664  888  2  0   99   48   978 0.956  88.99
 8.02 PlyA + 185224 185229    6                               1.05

 9.02 PlyA - 186143 186138    6                               1.05
 9.01 Term - 204264 204080  185  1  2   58   45   128 0.551   3.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:661029_865774|GENSCAN_predicted_peptide_1|307_aa
MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
TPAGPAS

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_1|924_bp
atgccgcgctccttcctggtaaagaagatcaaaggggacggcttccagtgcagcggggtg
ccggcccccacctaccaccccttggagacagcctacgtgctgcctggcgcccgggggcct
cccggggacaacgggtacgccccgcaccgcctgcccccgagcagctacgatgcggaccag
aagccgggcctggagctggccccggccgagcccgcgtacccgccggcggcgccggaggag
tacagcgaccccgaaagcccgcagtcgagcctgtcggcgcgctacttccgaggggaggcg
gcagtgaccgacagctactccatggacgccttcttcatctcggacgggcgctcgcggcgg
cggcggggcgggggcggcggggacgcggggggctcgggagacgcggggggcgccgggggg
cgcgcggggcgcgcgggggcgcaggcgggcggcgggcaccggcacgcgtgcgccgagtgc
ggcaagacctacgccacgtcgtcgaacctgagccgccacaagcagacgcaccgcagcctg
gacagccagctggcgcgcaaatgcccgacgtgcggcaaggcctacgtgtccatgcccgcg
ctcgccatgcacctgctcacgcacaacctgcgccacaagtgcggcgtctgcggcaaggcc
ttctcgcggccctggctgctgcagggtcacatgcgctcgcacaccggcgaaaagccgttc
ggctgcgcgcactgcggcaaggccttcgccgaccgctccaacctgcgcgcgcacatgcag
acgcactcggccttcaagcactaccgctgccgccagtgcgacaagagcttcgcgctcaag
tcctacctccacaagcactgcgaggcggcctgcgccaaggcggccgagccacccccgccg
acccccgccggcccggccagctga

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_2|70_aa
MEFCMNSKEESSHKCIRSTLMGLSLRCREERRKFFDRKILEILLLSPIGLLEAGVSPEVF
SPQEAYWSIT

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_2|213_bp
atggaattctgtatgaattccaaggaggagagtagccacaaatgcatccgctccacgctg
atggggctctctctccgttgcagagaggaaaggaggaaatttttcgatagaaaaatcttg
gagatcctgttgctgtcacccatcgggctgttggaagctggggttagtccagaagtcttc
agcccccaagaggcctactggagcataacttga

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_3|199_aa
MPGISASEFRKAEDAAHFGAKRAVVWDALAGEGCILTVCFQVHLQREAERPFLVRLATQR
GPAPDRAFKGTARLPCSQHFTLSSYRRATRCKVEKKVNERLARSRPEPPGRDQGTPKPAG
APPVCSPPPPSAADPARPGRGQPAKDTEKRRRKECRPWAPCHDQAEDPAAATMSHSSATE
TLFIPHSGSMSTGGRDLKV

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_3|600_bp
atgcccggaatttctgcttcagaattccgtaaggctgaagatgctgcacactttggagcc
aagagggcagttgtctgggatgctctggctggggagggctgcattctgacggtctgcttc
caagtccatctgcagcgcgaggctgagcgccctttcctggtgaggttggccactcagagg
ggcccagctcccgacagggcatttaaaggtacggcccgcttgccctgttctcagcacttc
accctcagctcgtaccgtagagccacccgctgtaaggttgagaaaaaggtgaacgagcga
ctggcccggagtcggcccgagccccctggacgggaccaggggacccccaagccggccggc
gccccgcccgtctgctccccacccccaccgtcagctgcggacccggcccggccgggaagg
gggcagcctgccaaggacacagagaagaggaggagaaaggaatgtaggccatgggcaccc
tgccatgaccaagctgaagaccccgcagcagccaccatgtcccacagctcagcaactgag
acactgttcattcctcactcaggttccatgtccactgggggccgggatctgaaggtctga

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_4|474_aa
MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL
LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC
TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV
PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV
LQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHL
AFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL
LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVSIRPVASWVLFSGCLSYVKV
MLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_4|1425_bp
atggccttcctgatgcacctgctggtctgcgtcttcggaatgggctcctgggtgaccatc
aatgggctctgggtagagctgcccctgctggtgatggagctgcccgagggctggtacctg
ccctcctacctcacggtggtcatccagctggccaacatcgggcccctcctggtcaccctg
ctccatcacttccggcccagctgcctttccgaagtgcccatcatcttcaccctgctgggc
gtgggaaccgtcacctgcatcatctttgccttcctctggaatatgacctcctgggtgctg
gacggccaccacagcatcgccttcttggtcctcaccttcttcctggccctggtggactgc
acctcttcagtgaccttcctgccgttcatgagccggctgcccacctactacctcaccacc
ttctttgtgggtgaaggactcagcggcctcttgcccgccctggtggctcttgcccagggc
tccggtctcactacctgcgtcaatgtcactgagatatcagacagcgtaccaagccctgta
cccacgagggagactgacatcgcacagggagttcccagagctttggtgtccgccctcccc
ggaatggaagcacccttgtcccacctggagagccgctaccttcccgcccacttctcaccc
ctggtcttcttcctcctcctatccatcatgatggcctgctgcctcgtggcgttctttgtc
ctccagcgtcaacccaggtgctgggaggcttccgtggaagacctcctcaatgaccaggtc
accctccactccatccggccgcgggaagagaatgacttgggccctgcaggcacggtggac
agcagccagggccaggggtatctagaggagaaagcagccccctgctgcccggcgcacctg
gccttcatctataccctggtggccttcgtcaacgcgctcaccaacggcatgctgccctct
gtgcagacctactcctgcctgtcctatgggccagttgcctaccacctggctgccaccctc
agcattgtggccaaccctcttgcctcgttggtctccatgttcctgcctaacaggtctctg
ctgttcctgggggtcctctccgtgcttgggacctgctttgggggctacaacatggccatg
gcggtgatgagcccctgccccctcttgcagggccactggggtggggaagtcctcattgtg
agtatccggccggtggcctcgtgggtgcttttcagcggctgcctcagttacgtcaaggtg
atgctgggcgtggtcctgcgcgacctcagccgcagcgccctcttgtggtgcggggcggcg
gtgcagctgggctcgctgctcggagcgctgctcatgttccctctggtcaacgtgctgcgg
ctcttctcgtccgcggacttctgcaatctgcactgtccagcctag

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_5|135_aa
MDNSYFFRQLKIIQCLGEQLLVNKVLTFTINETSFSPNFPKCMGHSKGIPGICIDVVLFF
ADLTPMAPPKPDVSTRTANPAPVAPPPKAIQPVGAQLQPPMISSPPQPISSKHLLPGHPQ
LFPYTAFEKPLTYKL

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_5|408_bp
atggacaatagctatttcttccggcaactgaagattattcaatgcttgggtgaacagctc
cttgtgaacaaggtcttgacctttactattaatgagacctcgttcagtccaaattttccc
aaatgtatgggccactccaaaggcatacctggaatctgtatagatgtggttctgtttttt
gcagatttgacacccatggctccacctaaacctgatgtctccaccaggaccgccaaccct
gctcctgtggccccccccccaaaagcgattcagcctgtaggagcacagcttcaaccccct
atgatttcatctccaccccaaccaatcagcagcaagcacctgttacctggccacccccaa
ctcttcccctatactgcctttgaaaaacccctcacctacaagctttga

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_6|204_aa
MWEKKAERGPSEGASTPGSVLKALPASFQRLDVTSYIVGEIIVPIKDGPTVWLSQWGMSS
DLECSHRKLGPILSEGTFPAVGAFDSEGHPLSSTAEGSSKGDPKGAHAGLGPPGRRWERP
LPARVRAVSLSKACARGAGTRLARAPVRGWTRLIWRLSVYGDRGPLFGDRTGLTFLGWMQ
GQQILQPPEPLLASWESSPVWGRE

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_6|615_bp
atgtgggagaagaaggcagagagagggccttctgagggggcctccacgccaggctctgtg
ctaaaagctttgccagcatcatttcagagacttgatgtgacatcttacatcgtaggggaa
attattgttcccattaaagatgggcccacagtgtggctaagccagtggggcatgtcctca
gacctggagtgctcccataggaagctgggcccgattctttctgaagggactttccctgcg
gtgggggccttcgacagtgagggccacccgctcagctcgaccgcggagggcagctccaaa
ggggaccccaaaggtgcccacgcggggctggggcctcctgggcgtcgttgggagcggcca
ctaccggcccgggtccgagctgtcagcctctccaaagcctgcgcgagaggagccgggaca
cgcctagcgcgggctccagtccggggttggactcggctcatttggcgcctttctgtctac
ggggacagaggaccactctttggggatcggacgggactgacatttctgggctggatgcag
gggcagcagattctccagcccccagagccgctgctggcctcttgggaatcatccccagtt
tggggaagggaatag

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_7|303_aa
MEWMGKEASLHQGRPPGDLRLGYLIRETRLKIDLPEPPGHDKDGEIKQVEGFPRHLAKRR
SHEPGSWSSRRFRLTKSTDHPHAGVSKQAPRGSVPAHTADKAGPRQRLIAPAPDPTAAKM
LMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQ
FAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPRPKGLE
GTKHEEIPLNNRLFWTQPTSKAKATHQEVYIKCIKLFLISVRKREERKRGRKKGEKVKHI
CQE

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_7|912_bp
atggagtggatgggaaaggaagcctcgctccaccagggccgacccccaggagacctcaga
ctcggttaccttatccgtgaaacgaggttaaaaatagaccttcctgagcctccaggtcac
gataaggatggagagatcaaacaggtcgagggctttcctcggcatctggcaaaaaggcgg
agccacgaaccaggctcctggtcttcaagaagatttcgactaaccaagtccacagaccac
ccccacgcaggggtctctaagcaagccccacgagggtctgtcccagcccacaccgcggac
aaagcaggcccaagacagaggctgatcgccccagccccggaccctacagctgccaagatg
ctgatgcctaagaagaaccggattgccattcatgaactcctttttaaggagggagtcatg
gtggccaagaaggatgtccacatgcctaagcacccggagctggcagacaagaatgtgccc
aaccttcacgtcatgaaggccatgcagtctctcaagtcccggggctgcgtgaaggaacag
tttgcctggagacatttctactggtaccttaccaatgagggtagccagtatctccgtgat
taccttcatctgcccccagagattgttcctgccaccctacatctgcccccggagattgtt
cctgccaccctacaccgcagccgtccagagactggcaggcctcggcctaaaggtctggag
gggaccaaacacgaggaaataccgttgaacaaccggctgttctggacccagcccacctca
aaggccaaggccactcatcaagaggtatatattaaatgtataaagctttttcttatatca
gtaagaaagagagaagaaagaaagagaggaagaaagaaaggagagaaagttaaacatatc
tgtcaagaataa

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_8|295_aa
MPVHTLSPGAPSAPALPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVA
NTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVSP
AEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPAR
PPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAG
PGSSEGGCSRRSSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESPAAEG

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_8|888_bp
atgcctgtgcacacgctgagccccggagccccgtccgcccccgccctaccttgccgcctg
cggaccagggtccctggctacctgctacgggggccggcagatggtggagcccggaaaccg
agcgctgtggagcgcctggaggccgacaaggccaagtacgtcaagagcctgcacgtggcc
aacacccgccaggagcctgtgcagcccctgctgtccaaacagccgctctttagccctgag
actcgccgcacagtgctcacgcccagccgccgagccctgcctggcccctgccgacggccc
cagctggacctggacatcctcagcagcctcatcgacttgtgtgacagccccgtgtcccct
gccgaggccagccgcactcctggacgggccgagggagccggccgtcctcccccagccacc
cctccgcgaccgccgcccagtacctctgcggtccgccgggtggacgtccgccccctgccc
gcctcgcctgcccggccctgcccatcacccggccctgccgccgcctccagcccagcccgg
ccgccgggtttgcaacgctccaagtcggacttgagcgagcgcttttctagggcagccgct
gatctcgagcgcttttttaacttctgcggcctggacccggaggaggcgagagggttgggt
gtggcccacctggcacgggccagctcggatatcgtgtccctggcagggcccagtgctggg
ccgggcagctctgaagggggctgctcccgccgcagctcggtgactgttgaggagcgggcc
cgggagcgcgttccctatggcgtgtcggtggtggagcgcaatgcccgcgtgatcaagtgg
ttgtatgggctaaggcaggctcgggagagcccagcagctgaaggctag

>gi568815578r:661029_865774|GENSCAN_predicted_peptide_9|61_aa
XAQMRMCVLRFNTGTYSATTDVSSGPSQQPGITHVPTEDVFGIAFCCFSAAFLLLRPHEL
A

>gi568815578r:661029_865774|GENSCAN_predicted_CDS_9|186_bp
ngtgcccagatgcgcatgtgtgtgctgaggttcaacactggaacttattcagctacaaca
gatgtgtcctctgggccctcgcagcaacctggtataacacacgtgcctacagaggatgtg
tttggcatcgcattctgctgcttttctgctgcttttctgcttcttcgaccacatgaattg
gcttag