GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:38:22

Sequence gi568815578r:563674_775601 : 211928 bp : 49.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 Intr -   3838   3731  108  1  0   80   52    81 0.072   4.18
 1.02 Intr -   5230   5105  126  1  0   37   17   118 0.078   0.48
 1.01 Init -  16452  15832  621  0  0   71   63   131 0.083   4.25
 1.00 Prom -  19778  19739   40                              -3.56

 2.11 PlyA -  21001  20996    6                               1.05
 2.10 Term -  25532  25501   32  0  2  135   38    24 0.639   0.12
 2.09 Intr -  34241  34109  133  2  1   46   96    60 0.201   2.82
 2.08 Intr -  40992  40957   36  0  0  128  100    43 0.922   7.96
 2.07 Intr -  46659  46040  620  1  2   57   84  1221 0.087 110.64
 2.06 Intr -  64063  63996   68  0  2   60   98    66 0.156   3.35
 2.05 Intr -  71376  71262  115  1  1   72   45    53 0.020  -1.09
 2.04 Intr -  72179  72062  118  2  1   54   98    60 0.036   3.64
 2.03 Intr -  82291  82097  195  1  0   58   36    94 0.009   0.81
 2.02 Intr -  85244  85077  168  2  0  112    5   261 0.073  20.34
 2.01 Init -  89512  89303  210  1  0  102   76   449 0.997  41.89
 2.00 Prom -  97706  97667   40                              -4.06

 3.03 PlyA -  97945  97940    6                              -1.95
 3.02 Term - 100788  99998  791  1  2  125   52  1429 0.938 136.48
 3.01 Init - 111928 111796  133  1  1  100  113   143 0.980  18.30
 3.00 Prom - 112166 112127   40                              -2.36

 4.00 Prom + 114970 115009   40                              -2.86
 4.01 Init + 117855 117931   77  2  2   58  119    54 0.602   6.06
 4.02 Intr + 129043 129147  105  1  0   95   95    67 0.630   7.43
 4.03 Term + 143695 143725   31  1  1  116   48    28 0.014  -1.07
 4.04 PlyA + 147766 147771    6                               1.05

 5.06 PlyA - 148723 148718    6                               1.05
 5.05 Term - 159035 158856  180  2  0   96   51    60 0.027   0.71
 5.04 Intr - 164646 164527  120  0  0   85   47    77 0.208   3.99
 5.03 Intr - 165131 164924  208  1  1   76   46   110 0.423   4.68
 5.02 Intr - 170684 170601   84  1  0   86   31    79 0.426   0.94
 5.01 Init - 172263 172256    8  0  2  114   57     0 0.374  -0.00
 5.00 Prom - 189024 188985   40                              -3.06

 6.05 PlyA - 189046 189041    6                               1.05
 6.04 Term - 197565 197353  213  0  0  137   48   250 0.997  23.13
 6.03 Intr - 198151 198013  139  0  1  138   56   120 0.891  14.27
 6.02 Intr - 200330 199825  506  2  2  132   69   539 0.987  48.18
 6.01 Init - 202101 201535  567  0  0  111   80   877 0.997  84.27

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  46564  46040  525  1  0   91   84  1203 0.830 114.45
S.002 Term -  85244  85041  204  2  0  112   43   285 0.925  23.77


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:563674_775601|GENSCAN_predicted_peptide_1|285_aa
MGLLHLIFDKPDKNKKWGKDSLFSKWCWENWLAICRKLKLDPFLTPNTKINSRWIKDLNV
RPKTIKTLEENLGNAIQDIGMGKDFMTKTLKAMATKAKIDKWDLIKLKSFCTAKETTIRV
NRQPTEWEKIFAIYSSDKGLISRIYKELKQIYKKKTNNPINKWAKDMNRHFSKEDIYAAN
RHMKKCSSSLAIREMQIKTTMRYHLTPGDLEVLGNHSRQIEDEGVCYAICPPGSQAAQAA
PNHGQDENENQVQYPQNEIPASSWGPLLHSLTMDEVILLDLLDCQ

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_1|855_bp
atggggttgctccacctgatctttgacaaacctgacaaaaacaagaaatggggaaaggat
tccctatttagcaaatggtgctgggaaaactggctagccatatgtagaaagctgaaactg
gatcccttccttacacctaatacaaaaattaactcaagatggattaaagacttaaatgtt
agacctaaaaccataaaaaccctagaagaaaacctaggcaatgccattcaggacataggc
atgggcaaggacttcatgactaaaacactaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagta
aacaggcaacctacagaatgggagaaaatttttgcaatctactcatctgacaaagggcta
atatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
aacaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaac
agacatatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca
atgagataccatctcacaccaggggatttggaagtccttggcaatcattcaaggcagatt
gaagatgaaggcgtgtgttatgccatctgtcctccaggttctcaagccgctcaggcagca
ccaaaccacgggcaggacgagaacgaaaaccaagtacagtacccgcagaatgagatccct
gcctcctcctgggggcctctcctccactctctcaccatggatgaagttatcctgttggac
cttcttgactgccaa

>gi568815578r:563674_775601|GENSCAN_predicted_peptide_2|564_aa
MGLRAGGTLGRAGAGRGAPEGPGPSGGAQGGSIHSGRIAAVHNVPLSVLIRPLPSVLDPA
KVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQS
TLSDLRVCSEGEVPLSSVSKLLLCPLGWNESEDGRPLLKQLFLLAEKTQPDSAKGPARHC
EGGAEQIRSRGKLPGAIKKGFPGEVALEQKLDKVHSPSTHLTDEEIEAQKVDSWLHNLRA
PATKCLRASEGHKTCSFPKTLTPALAEDRKLNSAVSWACSHLKAYRVGELEGGGRRGRGS
ARERTAGRGRRWDAAHGGTRPAPMAFALLRPVGAHVLYPDVRLLSEDEENRSESDASDQS
FGCCEGPEAARRGPGPGGGRRAGGGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRT
LIPTEPVDRKLSKIETVRLASSYIAHLANVLLLGDSADDGQPCFRAAGSAKGAVPAAADG
GRQPRSICTFCLSNQRKGGGRRDLGGSCLKMRKRRHKEVKELGQGDTVAGGFESDVLAAE
PHWALNHHPHMTSPGPPVLFAFSP

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_2|1695_bp
atggggctgcgtgcaggaggaacgctgggcagggccggcgcgggtcggggggcgcccgag
gggcccgggccgagcggcggcgcgcagggcggcagcatccactcgggccgcatcgccgcg
gtgcacaacgtgccgctgagcgtgctcatccggccgctgccgtccgtgttggaccccgcc
aaggtgcagagcctcgtggacacgatccgggaggacccagacagcgtgccccccatcgat
gtcctctggatcaaaggggcccagggaggtgactacttctactcctttgggggctgccac
cgctacgcggcctaccagcaactgcagcgagagaccatccccgccaagcttgtccagtcc
actctctcagacctaagggtttgtagcgaaggtgaggtgcccctgtcttctgtgagtaaa
ctcctcctgtgcccgctgggctggaatgagagtgaagatggtcgccccctcctgaaacaa
cttttccttcttgcagagaagacccaaccagacagcgctaagggccctgccaggcactgc
gaaggaggtgcagaacagattcggagtagagggaagctgcctggagcaatcaagaaaggc
ttcccaggggaggtggcccttgaacagaaacttgataaagttcattctccttccactcat
ttgacagatgaggaaatagaggcacagaaagtggacagctggctgcacaatctgagggcc
cctgcaaccaaatgtctgagggcttctgagggccacaagacctgttccttccccaagacc
cttaccccggccctggctgaggacaggaagctaaattcagctgtcagctgggcctgcagt
catctgaaggcctatcgggttggggagttggagggcgggggccggcggggccgtgggagc
gcgcgggagcgcacggcggggcgcggccgacgctgggacgcggcgcacggagggacgcgg
ccggcgcccatggcgttcgcgctgctgcggcccgtcggcgcgcacgtgctgtacccggac
gtgcggctgctgagcgaggacgaggagaaccgcagcgagagcgacgcgtcggaccagtcg
ttcggctgctgcgagggcccggaggcggcgcggcgcggcccgggccccgggggcgggcgg
cgggcgggcggcggcggcggcgcgggccccgtggtggtggtgcgacagcggcaggcggcc
aacgcgcgggagcgggaccgcactcagagcgtgaacacggccttcacggcgctgcgcacg
ctcatccccaccgagccggtggaccgcaagctgtccaagatcgagaccgtgcgcctggcg
tccagctacatcgcgcacctggccaacgtgctgctgctgggcgactcggccgacgacggg
cagccgtgcttccgtgccgcgggcagtgccaagggcgccgtccccgccgccgccgacggc
ggccgccagccgcgctccatctgcaccttctgcctcagcaaccagcgcaaggggggtggc
cgtcgtgacctggggggcagctgcttgaagatgaggaaacggaggcacaaggaggttaaa
gaacttggccaaggtgacacagtggctggtggatttgaatcagatgttctagctgcagag
ccccactgggctctcaaccaccacccccacatgacctcaccaggtcccccggtccttttt
gccttcagtccatga

>gi568815578r:563674_775601|GENSCAN_predicted_peptide_3|307_aa
MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQ
KPGLELAPAEPAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRR
RRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSL
DSQLARKCPTCGKAYVSMPALAMHLLTHNLRHKCGVCGKAFSRPWLLQGHMRSHTGEKPF
GCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALKSYLHKHCEAACAKAAEPPPP
TPAGPAS

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_3|924_bp
atgccgcgctccttcctggtaaagaagatcaaaggggacggcttccagtgcagcggggtg
ccggcccccacctaccaccccttggagacagcctacgtgctgcctggcgcccgggggcct
cccggggacaacgggtacgccccgcaccgcctgcccccgagcagctacgatgcggaccag
aagccgggcctggagctggccccggccgagcccgcgtacccgccggcggcgccggaggag
tacagcgaccccgaaagcccgcagtcgagcctgtcggcgcgctacttccgaggggaggcg
gcagtgaccgacagctactccatggacgccttcttcatctcggacgggcgctcgcggcgg
cggcggggcgggggcggcggggacgcggggggctcgggagacgcggggggcgccgggggg
cgcgcggggcgcgcgggggcgcaggcgggcggcgggcaccggcacgcgtgcgccgagtgc
ggcaagacctacgccacgtcgtcgaacctgagccgccacaagcagacgcaccgcagcctg
gacagccagctggcgcgcaaatgcccgacgtgcggcaaggcctacgtgtccatgcccgcg
ctcgccatgcacctgctcacgcacaacctgcgccacaagtgcggcgtctgcggcaaggcc
ttctcgcggccctggctgctgcagggtcacatgcgctcgcacaccggcgaaaagccgttc
ggctgcgcgcactgcggcaaggccttcgccgaccgctccaacctgcgcgcgcacatgcag
acgcactcggccttcaagcactaccgctgccgccagtgcgacaagagcttcgcgctcaag
tcctacctccacaagcactgcgaggcggcctgcgccaaggcggccgagccacccccgccg
acccccgccggcccggccagctga

>gi568815578r:563674_775601|GENSCAN_predicted_peptide_4|70_aa
MEFCMNSKEESSHKCIRSTLMGLSLRCREERRKFFDRKILEILLLSPIGLLEAGVSPEVF
SPQEAYWSIT

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_4|213_bp
atggaattctgtatgaattccaaggaggagagtagccacaaatgcatccgctccacgctg
atggggctctctctccgttgcagagaggaaaggaggaaatttttcgatagaaaaatcttg
gagatcctgttgctgtcacccatcgggctgttggaagctggggttagtccagaagtcttc
agcccccaagaggcctactggagcataacttga

>gi568815578r:563674_775601|GENSCAN_predicted_peptide_5|199_aa
MPGISASEFRKAEDAAHFGAKRAVVWDALAGEGCILTVCFQVHLQREAERPFLVRLATQR
GPAPDRAFKGTARLPCSQHFTLSSYRRATRCKVEKKVNERLARSRPEPPGRDQGTPKPAG
APPVCSPPPPSAADPARPGRGQPAKDTEKRRRKECRPWAPCHDQAEDPAAATMSHSSATE
TLFIPHSGSMSTGGRDLKV

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_5|600_bp
atgcccggaatttctgcttcagaattccgtaaggctgaagatgctgcacactttggagcc
aagagggcagttgtctgggatgctctggctggggagggctgcattctgacggtctgcttc
caagtccatctgcagcgcgaggctgagcgccctttcctggtgaggttggccactcagagg
ggcccagctcccgacagggcatttaaaggtacggcccgcttgccctgttctcagcacttc
accctcagctcgtaccgtagagccacccgctgtaaggttgagaaaaaggtgaacgagcga
ctggcccggagtcggcccgagccccctggacgggaccaggggacccccaagccggccggc
gccccgcccgtctgctccccacccccaccgtcagctgcggacccggcccggccgggaagg
gggcagcctgccaaggacacagagaagaggaggagaaaggaatgtaggccatgggcaccc
tgccatgaccaagctgaagaccccgcagcagccaccatgtcccacagctcagcaactgag
acactgttcattcctcactcaggttccatgtccactgggggccgggatctgaaggtctga

>gi568815578r:563674_775601|GENSCAN_predicted_peptide_6|474_aa
MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL
LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC
TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV
PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV
LQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHL
AFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL
LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVSIRPVASWVLFSGCLSYVKV
MLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA

>gi568815578r:563674_775601|GENSCAN_predicted_CDS_6|1425_bp
atggccttcctgatgcacctgctggtctgcgtcttcggaatgggctcctgggtgaccatc
aatgggctctgggtagagctgcccctgctggtgatggagctgcccgagggctggtacctg
ccctcctacctcacggtggtcatccagctggccaacatcgggcccctcctggtcaccctg
ctccatcacttccggcccagctgcctttccgaagtgcccatcatcttcaccctgctgggc
gtgggaaccgtcacctgcatcatctttgccttcctctggaatatgacctcctgggtgctg
gacggccaccacagcatcgccttcttggtcctcaccttcttcctggccctggtggactgc
acctcttcagtgaccttcctgccgttcatgagccggctgcccacctactacctcaccacc
ttctttgtgggtgaaggactcagcggcctcttgcccgccctggtggctcttgcccagggc
tccggtctcactacctgcgtcaatgtcactgagatatcagacagcgtaccaagccctgta
cccacgagggagactgacatcgcacagggagttcccagagctttggtgtccgccctcccc
ggaatggaagcacccttgtcccacctggagagccgctaccttcccgcccacttctcaccc
ctggtcttcttcctcctcctatccatcatgatggcctgctgcctcgtggcgttctttgtc
ctccagcgtcaacccaggtgctgggaggcttccgtggaagacctcctcaatgaccaggtc
accctccactccatccggccgcgggaagagaatgacttgggccctgcaggcacggtggac
agcagccagggccaggggtatctagaggagaaagcagccccctgctgcccggcgcacctg
gccttcatctataccctggtggccttcgtcaacgcgctcaccaacggcatgctgccctct
gtgcagacctactcctgcctgtcctatgggccagttgcctaccacctggctgccaccctc
agcattgtggccaaccctcttgcctcgttggtctccatgttcctgcctaacaggtctctg
ctgttcctgggggtcctctccgtgcttgggacctgctttgggggctacaacatggccatg
gcggtgatgagcccctgccccctcttgcagggccactggggtggggaagtcctcattgtg
agtatccggccggtggcctcgtgggtgcttttcagcggctgcctcagttacgtcaaggtg
atgctgggcgtggtcctgcgcgacctcagccgcagcgccctcttgtggtgcggggcggcg
gtgcagctgggctcgctgctcggagcgctgctcatgttccctctggtcaacgtgctgcgg
ctcttctcgtccgcggacttctgcaatctgcactgtccagcctag