GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:09:01

Sequence gi568815579f:16561218_16788368 : 227151 bp : 49.50% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -   5440   5315  126  1  0   93   97   197 0.993  21.98
 1.03 Intr -   6952   6815  138  1  0  112   63   191 0.997  19.66
 1.02 Intr -  10365  10295   71  1  2   99   86    50 0.965   4.80
 1.01 Init -  11147  10727  421  2  1  100   94   748 0.999  71.15
 1.00 Prom -  13741  13702   40                              -4.96

 2.06 PlyA -  14070  14065    6                              -0.45
 2.05 Term -  16465  14810 1656  1  0   79   47  1835 0.996 167.93
 2.04 Intr -  17192  17118   75  2  0  110  105    63 0.939   9.91
 2.03 Intr -  22266  22211   56  1  2  112   61    38 0.585   2.20
 2.02 Intr -  24124  24039   86  0  2   82   41    57 0.339  -0.14
 2.01 Init -  26486  26407   80  2  2   81   77    63 0.487   3.52
 2.00 Prom -  38315  38276   40                              -4.56

 3.00 Prom +  44995  45034   40                              -4.16
 3.01 Init +  46708  46926  219  0  0   47  110   143 0.952  11.03
 3.02 Intr +  57497  57568   72  1  0   96   86     8 0.125   1.00
 3.03 Intr +  62952  63043   92  2  2   98  121    38 0.041   6.89
 3.04 Intr +  66436  66546  111  1  0   88   64    85 0.000   5.59
 3.05 Term +  90356  90539  184  2  1   60   54   194 0.562  10.22
 3.06 PlyA +  91778  91783    6                               1.05

 4.00 Prom +  93767  93806   40                              -4.56
 4.01 Init + 100001 100124  124  1  1  115   99   329 0.999  35.03
 4.02 Intr + 118767 118923  157  1  1   74  107   153 0.432  14.87
 4.03 Intr + 119180 119364  185  2  2   80   94   213 0.991  20.53
 4.04 Intr + 119704 119814  111  2  0  -11   94    98 0.515   0.85
 4.05 Intr + 121204 121291   88  2  1   51   59   157 0.394   8.13
 4.06 Intr + 125071 125188  118  1  1   43  121   129 0.380  12.17
 4.07 Term + 126927 127154  228  2  0   88   50   276 0.997  20.43
 4.08 PlyA + 128787 128792    6                               1.05

 5.00 Prom + 130976 131015   40                              -4.86
 5.01 Init + 131901 131955   55  2  1  114   79    43 0.904   7.45
 5.02 Term + 138938 138999   62  0  2  112   43    12 0.340  -2.93
 5.03 PlyA + 139502 139507    6                               1.05

 6.00 Prom + 151210 151249   40                              -5.36
 6.01 Init + 166339 166461  123  0  0   80   56   123 0.099   6.69
 6.02 Intr + 169975 170061   87  0  0  111   78    32 0.174   4.67
 6.03 Intr + 175417 175533  117  0  0  106   62    47 0.545   4.56
 6.04 Intr + 183204 183501  298  2  1   65   94   304 0.990  25.15
 6.05 Intr + 187922 189194 1273  0  1   53  131  1279 0.960 116.00
 6.06 Intr + 198008 198211  204  2  0   92   96   341 0.999  33.62
 6.07 Intr + 200762 200921  160  2  1   58  100   212 0.999  19.39
 6.08 Intr + 202611 202728  118  2  1   92   82   114 0.921  11.24
 6.09 Intr + 203817 203975  159  1  0  112   92   164 0.994  19.16
 6.10 Intr + 211909 212106  198  2  0   74  113    41 0.785   4.52
 6.11 Intr + 218126 218248  123  0  0   63   94   172 0.834  15.86

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  47534  47647  114  1  0   56   45    83 0.887  -0.63
S.002 Term -  92908  92814   95  2  2   82   47   182 0.897  11.49
S.003 Intr -  98230  98178   53  0  2   82  110    65 0.889   6.65
S.004 Init -  98893  98868   26  1  2   76   58    65 0.886   0.57
S.005 Init + 166339 166456  118  0  1   80  110   128 0.836  12.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_1|252_aa
MAAAAVGAGHGAGGPGAASSSGGAREGARVAALCLLWYALSAGGNVVNKVILSAFPFPVT
VSLCHILALCAGLPPLLRAWRVPPAPPVSGPGPSPHPSSGPLLPPRFYPRYVLPLAFGKY
FASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLAT
VTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVL
VDLSAFLVSSDL

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_1|756_bp
atggcggcggccgcggtgggcgcgggccacggcgcggggggcccgggcgcagcgagcagc
agtggtggggcgcgcgagggcgcgcgggtggcggcgctgtgcctgctgtggtacgcgctg
agcgcgggcggcaacgtggtcaacaaggtgatcctgagcgccttcccgttcccggtgacc
gtgtcgctgtgccacatcctggctctgtgcgctgggctcccgccgctgctgcgcgcctgg
cgcgtgccccccgcgccgcccgtctcgggccccggacccagtccgcatccgtcgtccggc
ccgctgctgccgccgcgcttctacccgcgctacgtgctaccgctcgccttcggcaagtac
ttcgcgtccgtgtcagcgcacgtcagcatctggaaggtgcccgtgtcctatgcacacacc
gtcaaggccaccatgcccatctgggtggtcctcctgtcccggatcattatgaaggagaag
cagagcaccaaggtatacttgtcactcatccccatcatcagcggtgtcctgctggccacc
gtcaccgagttgtcttttgacatgtggggactcgtcagcgccctcgccgccacgctgtgc
ttctcgcttcagaacattttctccaaaaaggtcttgcgagattcacggatccaccatctc
cggctgctcaacatcctgggctgccacgccgtcttctttatgatccccacctgggttctg
gtggacctctcggctttcctggtcagcagcgacttg

>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_2|650_aa
MDMTDHSGGRLLLGVAGGPQQEVLFKWSGLSLQEGTVDLACAPGSGSLWFPLEERRTSRS
NEEAKLKQIKWAGAIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELA
KRAKKLLRSWQKLIEPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIHDLKSR
NDLQRLPGQRLDRLGSRKRRGDQRDLGHPGPPPKVSKASHDPLVPNSSPLPTNGISGSPE
SFASSLDGSGHAGPEGSRLERDENDKHSGKIPVNAVRPHTSSPGLGKPPGPCLQPKASVL
QQLDRVDETPGPPHPKGPPRCSFSPRNSRHEGSFARQQSLYAPKGSVPSPSPRPQALDAT
QVPSPLPLAQPSTPPVRRLELLPSAESPVCWLEQPESHQRLAGPGCKAGLSPAEPLLSRA
GFSPDSSKADSDAASSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPM
TRQIKPLTQKEPVRADSPVHMEQQSRTELDKQEAKASLQSPFEQTNWKELSRNEIIQSYL
SRQSSLLSSSGAQTPGAHHFMSEYLKQEESTRQGARQLHVLVPQSPPTDLPGLTREVTQD
DLDRIQASQWPGVNGCQDTQGNWYDWTQCISLDPHGDDGRLNILPYVCLD

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_2|1953_bp
atggacatgacagaccactcaggtggccggctgctcctgggagtagcaggagggccccag
caggaagtgcttttcaagtggtcaggcctctccctgcaggaaggaactgtcgacctagcg
tgtgcccctggttcgggctctctgtggtttcctttagaagagaggcgcacttcccgcagc
aatgaagaggccaaactgaagcaaattaagtgggcaggggcgatccggaacatggtggcg
gtgctggaagtcatctccagcctggagaaataccctattaccaaagaggcacttgaggaa
acacgacttgggaagctcatcaacgacgtccgcaagaaaaccaagaacgaggagctcgcc
aagcgggccaagaagctgctgcggagctggcagaagctcatcgagccggcacaccagcat
gaggcggcgctgcgggggctggcgggggccaccggctctgccaacgggggcgcacacaac
tgccggccggaggtgggggcggctggcccacccaggagcatccatgacctgaagagccgc
aatgacctccagaggctgcccgggcagcggctggacaggctgggcagccgcaagcgccgg
ggtgaccagcgtgacctcggccacccagggccgccacccaaggtctccaaagctagccac
gaccccctggtccccaactcatcccccctccccaccaacgggatcagtgggagtccagag
agcttcgccagctccctggatggcagtgggcatgcaggcccagagggcagccgcctggag
cgtgacgagaatgacaagcacagtggcaagatccccgtcaacgccgtgcgaccgcacacc
agctccccgggcctgggcaagccccctggaccctgcttgcagccaaaggcttcggtgctg
cagcagctggacagggtggacgagactccggggcctccccatcccaagggaccccctcgc
tgctctttcagtcctcggaactcacggcatgagggctcctttgcccggcagcagagcttg
tatgcacccaagggctccgtgcccagcccctcaccgcggccccaggcactcgatgccaca
caggtgccgtcaccgcttccactggcacagccgtccacaccccccgtacggcggctcgag
ctgctgcccagtgcggaaagcccagtgtgctggcttgagcagcctgagagccaccagcgg
ctggcggggccgggctgcaaggcagggctgtccccagccgagcccctcctgtcccgggca
ggcttttccccagactcctccaaggcggacagtgatgctgcctcctcagggggctcggac
agtaaaaagaagaagaggtaccgacctcgagactatacggttaacttggacgggcaggtg
gctgaggcgggcgtcaagcctgtccggttaaaagagcggaagctcacctttgaccccatg
acgagacagatcaaacctctgacccagaaagagccagtgcgggcagacagccctgtgcac
atggagcagcagtccaggacagagctggacaagcaggaggccaaggccagcctccagagc
cccttcgaacagacgaactggaaggagctgtcacgcaacgagatcatccagtcctacctg
agccggcagagcagcctgctctcatcatcgggcgcgcagaccccaggggctcaccacttc
atgtctgagtacctgaagcaggaggagagcacccggcaaggggccaggcagctgcatgtg
ctggtgcctcaaagcccgcccacggacctccctggtctgacccgggaggtcacacaggac
gatctcgacagaatccaggccagccagtggccgggggtgaacgggtgtcaggacacacag
ggtaactggtatgactggacgcagtgcatatcgctcgatccgcacggcgacgacgggcgc
ttgaacattctgccttatgtctgcttggactga

>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_3|225_aa
MGNYDHENCPSSQLQRRRHHLDKEPVCGLKPGKQAKGHQGPGGQGSRPRPDLRLHTFQYI
SSSGAASLQHPSQDLDVSWEHPLYCGTVWVEPTADSGDLNLDLEGALWGAYTSSQSHPVD
KKSAGKPRPHGSLGLTYRALPGCPTCPRPGPEKREAGMAAALEGRLADEGVKMLVKQERM
MKQVHRKDENERSTLTSSLPQDLCKDENENHADFFPAPGPLQRRE

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_3|678_bp
atgggaaactacgatcacgagaactgtcccagcagccagctgcaaaggcgcagacaccat
ctggacaaggaacctgtctgtggcctgaagcccggcaagcaggccaaggggcaccagggc
cctggtgggcaaggctccaggcccaggccagatctccgtctgcacacgttccaatacatc
tcctcttctggggccgcgagccttcagcatccaagccaggaccttgatgtctcctgggaa
catcccctctattgtgggactgtttgggtggaacccacagcagattcaggggatctgaac
ttagatctggaaggagctttatggggtgcatacaccagttcccaatcccaccctgtggac
aagaaatctgcaggcaaaccaaggccgcacggaagcctcggcctcacgtaccgagcgctg
ccgggctgcccgacctgcccccggcccgggcccgagaagcgagaggcagggatggcagcg
gccctcgaggggagactagcagatgagggagtgaagatgctggtcaaacaggagaggatg
atgaagcaggtgcacaggaaagacgagaatgagagaagcacactgacttcttccctgccc
caggacctttgcaaagatgagaatgagaaccatgctgacttcttccctgccccaggacct
ttgcaaagacgagaatga

>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_4|336_aa
MELLSALSLGELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAML
HCFGSYILADLLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVA
MKEVVRVRKIAVGIHHAHHHYHHGWFVMIATGWVKAPLASTHEMPVAHLSPAVTKKLSPD
IAKRLLEGKMAAGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKASLYGAILFTLQQTR
WLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDALEGYICPVLFGSACGGDHHHDNHG
GSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKKAD

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_4|1011_bp
atggagctgctctcggcgctgagcctgggcgaactggcgctcagcttctcgcgggtgccg
ctcttccccgtcttcgacctcagttacttcatcgtctccatcctctacctcaagtatgag
ccaggagcagtcgaactgtcccggcgccaccccatcgcgtcctggctgtgcgccatgctg
cattgcttcgggagctacatcctggctgatctgctccttggggagccactgatcgattac
ttcagcaacaactccagcatcctgctggcctcagctgtctggtacttgattttcttctgc
cccctggacctcttctacaagtgtgtctgcttcctgcctgtgaaactcatcttcgtggcc
atgaaggaggtggtgcgagtccgcaagatcgcggtgggcatccatcacgcccatcaccac
taccaccacgggtggttcgtcatgattgcaactgggtgggtcaaagcacccctggcctcc
acccacgagatgccagtagcacacttgtccccagctgtgacaaagaaattgtctccagac
attgctaaacgcctcctagagggcaaaatggctgcaggttctggtgtcgccctcatgtcc
aactttgagcagctgctccgaggggtctggaagccagagaccaacgagatcctgcacatg
tctttccccaccaaggccagcctgtatggagccatcctcttcaccctccagcagacccgc
tggctcccagtgtccaaagccagcctcatcttcatcttcaccttgttcatggtgtcctgt
aaggtgtttctgacagccacccactcacacagctccccctttgatgccctggagggctac
atctgccccgtgctgtttggttcggcctgcgggggtgaccatcaccacgacaaccatggt
gggtcccacagcggtggtgggccaggagctcagcattcggccatgcccgccaagtccaag
gaggagttgagcgagggctccaggaagaagaaggccaagaaggcggattag

>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_5|38_aa
MPSQIHIFSHEKNANQNHTLGSTIVLCLSEFDDSRNLI

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_5|117_bp
atgcccagtcagatacacatcttcagccatgagaagaatgcaaatcaaaaccacaccctt
ggcagcaccattgtactttgtctctctgaatttgatgactctaggaacctcatatag

>gi568815579f:16561218_16788368|GENSCAN_predicted_peptide_6|954_aa
MSVGPLSPSTRRRLLRGEAGPLPAPPPSGVTIFISSTVSGKIWMQRGKPCRALPTLKCQT
FCQRHGLMFEVVDLRWGIRNIEATDHLTTELCLEEVDRCWKTSIGPAFVALIGDQYGPCL
IPSRIDEKEWEVLRDHLTARPSDLELVARYFQRDENAFPPTYVLQAPGTGEACEPEEATL
TSVLRSGAQEARRLGLITQEQWQHYHRSVIEWEIERSLLSSEDREQGATVFLREIQDLHK
HILEDCALRMVDRLADGCLDADAQNLLSSLKSHITDMHPGVLKTHRLPWSRDLVNPKNKT
HACYLKELGEQFVVRANHQVLTRLRELDTAGQELAWLYQEIRHHLWQSSEVIQTFCGRQE
LLARLGQQLRHDDSKQHTPLVLFGPPGIGKTALMCKLAEQMPRLLGHKTVTVLRLLGTSQ
MSSDARGLLKSICFQVCLAYGLPLPPAQVLDAHTRVVQFFHTLLHTVSCRNFESLVLLLD
AMDDLDSVRHARRVPWLPLNCPPRVHLILSACSGALGVLDTLQRVLLDPEAYWEVKPLSG
NQGQQMIQLLLAAARRTLSPVHTDLLWASLPECGNPGRLRLAFEEARKWASFTVPVPLAT
TAEEATHQLCTRLEQTHGQLLVAHVLGYIVSSRHGLSEAELKDVLSLDDEVLQDVYRDWT
PPSKELLRFPPLLWVRLRRDLGYYLARRPVDGFTLLAIAHRQLVEVVRERYLSGSERAKR
HGVLADFFSGTWSQGTKKLITLPLVGKPLNLDRKVAPQPLWFSHTVANLRKLKELPYHLL
HSGRLEELKQEVLGSMSWISCRGISGGIEDLLDDFDLCAPHLDSPEVGLVREALQLCRPA
VELRGMERSLLYTELLARLHFFATSHPALVGQLCQQAQSWFQLCAHPVLVPLGGFLQPPG
GPLRATLSGCHKGITAMAWGVEEKLLVIGTQDGIMAVWDMEEQHVIHMLTGHTX

>gi568815579f:16561218_16788368|GENSCAN_predicted_CDS_6|2862_bp
atgagcgtgggccctctcagcccgagtacccgccggcggcttctgcggggtgaagccggc
cccctcccagcacctccacccagcggtgtgaccatcttcatcagttccacagtctcaggt
aagatatggatgcagagagggaagccctgcagagcactgcctaccctgaagtgccagacc
ttctgccagaggcacggcttgatgtttgaggtcgttgatctgaggtggggtattcggaac
attgaagccactgaccacttgaccacagaactctgcttggaggaggttgaccggtgttgg
aaaacatccatagggccagcttttgttgccctcatcggtgatcagtacggcccctgtctg
attccctcgcggatcgatgagaaggagtgggaggtattgagggaccatctgactgccagg
ccaagtgacctggagctggtggcacgatacttccagagggacgagaatgcgtttcctccc
acctacgtcctgcaggcaccaggtactggggaggcctgtgaaccagaggaggccacctta
acttctgtcctacgctctggagcccaggaggcccggaggctggggctcatcacccaggag
cagtggcagcactaccaccggtcagtcattgagtgggagatagagcggagcctgctgagc
tcagaggaccgggaacagggagccaccgtcttccttagagagatccaagacctccacaaa
cacatccttgaagactgcgcccttaggatggtggaccggctcgcggatggctgcctggac
gctgatgcccagaaccttctcagcagcctcaaaagtcacatcactgacatgcacccaggg
gtcctcaagacccaccgcctgccgtggagccgcgacttggtgaaccccaagaacaagact
cacgcctgctacctgaaggagctgggtgagcagtttgtggtgagggccaatcaccaggtc
ctcacacgcctccgtgagctggatacggccggacaggagttggcgtggctctaccaagag
atccgccaccacctttggcagagctcggaggtcattcagaccttctgcggacgccaggaa
ctcctggcccggcttgggcagcagctcaggcacgatgacagcaagcagcacacccccctg
gtactctttgggcccccaggcattggaaagacagccctgatgtgcaagctggctgagcag
atgccaaggctgctggggcacaagacagtgaccgtcctgcggctgctggggacgtcacaa
atgagctcagatgcccgtggcctgctgaagagcatctgcttccaggtgtgcctggcctat
gggctgcccttgccccctgcccaggttctggacgcccacaccagggtggtccagtttttc
cataccctcctccacactgtctcttgcagaaacttcgagtctctcgtgctcctgctggat
gctatggatgacctggactctgtccgccatgctcggagggttccctggctgcctctcaac
tgccccccgagggtgcacctcatcctctcagcttgctcgggggcactgggggttttggac
accttgcagcgggtgctcctggacccggaggcctactgggaggtgaagcccctttccgga
aaccaaggccagcagatgatccaactcctgctggcagctgcaaggaggacgctgagcccg
gtgcacacagatttgctctgggccagcctcccagagtgtgggaacccagggcggctgagg
ctggcgtttgaggaagcccggaaatgggcctctttcaccgtgcctgtcccgctggccacc
accgcagaggaagccacgcaccaactctgcacccgcctggagcagacacacgggcagctc
ctcgtggcccacgtgctgggctacattgtgtcttcccgacacggtctctcggaggcggag
ctgaaggatgttttgtccctggacgacgaggtcctgcaggatgtgtaccgagattggacc
ccgcccagcaaggagctgctgcgcttcccgcccctgctgtgggtgcggcttcgtcgggat
ctgggatactacttggcccggcggcccgtggatggcttcaccctcctggccattgcccac
agacagctggtcgaggtggtccgtgagcgctacctgtcaggatccgagagagccaagagg
catggcgtcctggccgacttcttctcagggacctggagccagggtaccaagaagctcatc
actctgccacttgtggggaaaccactgaacttggaccgaaaggtggccccgcagcctctg
tggttctcacatacggttgcaaacctgcggaagctgaaggagttgccctatcacctgctt
cactcgggccgcctggaggagctgaaacaggaggttctgggcagcatgagctggatttcc
tgccggggcatctctgggggcattgaagacctgctggatgactttgacctgtgtgcccct
cacctggactcccctgaggttggcctggtccgtgaagccctccagctctgccgccctgct
gtggagctccgaggcatggagaggagcctcctgtacacagaactgctggccagactccat
ttcttcgccacctcacatccagcactggtgggacagctatgccaacaggcccagagctgg
ttccagttgtgcgcacaccctgtgctggtgcccctcggaggattcctccagcccccggga
ggacccctccgggcaactctcagcggctgtcacaaaggcatcaccgccatggcatggggt
gtggaggagaagctgctggtgattggcacccaggatggcatcatggctgtgtgggacatg
gaagagcagcatgtgatccacatgctaactggacacacagnn