GENSCAN 1.0	Date run:  6-Nov-116	Time: 13:32:15

Sequence gi568815579r:4558008_4770334 : 212327 bp : 53.65% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -    142     19  124  2  1   89   72   229 0.987  21.55
 1.01 Init -    450    330  121  0  1   89   74   238 0.978  20.81
 1.00 Prom -  12207  12168   40                              -5.41

 2.00 Prom +  12806  12845   40                              -2.71
 2.01 Init +  17413  17546  134  0  2   58  105    61 0.639   4.39
 2.02 Intr +  18350  18386   37  2  1   79   94    26 0.447   1.05
 2.03 Intr +  22189  22268   80  0  2   50   80    66 0.463   0.84
 2.04 Intr +  22602  22765  164  0  2   46   86    54 0.410   1.13
 2.05 Intr +  26310  26439  130  1  1   26   60   113 0.456   2.56
 2.06 Intr +  27684  27795  112  0  1  103   42    65 0.194   4.28
 2.07 Intr +  32841  32876   36  2  0  144   94    38 0.766   8.94
 2.08 Intr +  33771  33787   17  2  2   90  105     1 0.458  -3.18
 2.09 Intr +  34719  34890  172  0  1   72   58   100 0.279   5.86
 2.10 Intr +  61618  61733  116  0  2  137   84    -1 0.010   4.15
 2.11 Intr +  81402  81622  221  0  2   52   71   162 0.621   9.37
 2.12 Term +  82690  82808  119  2  2   79   42   106 0.657   4.11
 2.13 PlyA +  83351  83356    6                              -0.45

 3.00 Prom +  83883  83922   40                              -0.21
 3.01 Sngl +  93863  94423  561  1  0   83   46  1361 0.736 127.92
 3.02 PlyA +  96104  96109    6                               1.05

 4.10 PlyA -  96341  96336    6                               1.05
 4.09 Term -  96866  96778   89  0  2  104   38    49 0.304  -0.38
 4.08 Intr -  98398  98315   84  2  0   20   97    90 0.268   3.39
 4.07 Intr - 100321 100236   86  0  2   90   68    56 0.798   3.76
 4.06 Intr - 100663 100552  112  2  1   18   91    52 0.800  -1.56
 4.05 Intr - 101996 101924   73  2  1   83   96    79 0.985   7.67
 4.04 Intr - 102743 102662   82  1  1  156   83    93 0.860  15.74
 4.03 Intr - 106930 106869   62  1  2  123   78    39 0.982   4.42
 4.02 Intr - 110638 110588   51  1  0  110  105    25 0.978   5.99
 4.01 Init - 112327 112154  174  1  0  109   71   291 0.989  26.82
 4.00 Prom - 113886 113847   40                              -1.71

 5.31 PlyA - 115572 115567    6                               1.05
 5.30 Term - 118649 118557   93  2  0  128   52   131 0.993  11.63
 5.29 Intr - 121939 121828  112  0  1  120   94   118 0.917  16.48
 5.28 Intr - 124831 124689  143  1  2  127   52   365 0.984  36.46
 5.27 Intr - 125622 125470  153  0  0   52   98   319 0.987  30.08
 5.26 Intr - 126802 126656  147  1  0  108   47   245 0.757  23.34
 5.25 Intr - 127764 127619  146  1  2   96  109   213 0.970  24.71
 5.24 Intr - 130885 130750  136  1  1   79   81   267 0.981  25.75
 5.23 Intr - 131715 131563  153  0  0   95   75   254 0.943  25.58
 5.22 Intr - 132305 132237   69  2  0  104   72    33 0.505   3.17
 5.21 Intr - 132950 132871   80  0  2  153   76    31 0.990   8.17
 5.20 Intr - 136816 136654  163  1  1   88  105   116 0.945  13.36
 5.19 Intr - 137548 137371  178  0  1  113   75   249 0.946  26.54
 5.18 Intr - 139644 139544  101  0  2  127   73   128 0.947  14.61
 5.17 Intr - 142270 142209   62  2  2  101  116    57 0.995   8.74
 5.16 Intr - 144148 144020  129  2  0   41  109   218 0.980  20.37
 5.15 Intr - 144709 144596  114  2  0  140  100   170 0.999  24.32
 5.14 Intr - 146047 145879  169  1  1  127   81   218 0.999  25.03
 5.13 Intr - 146297 146124  174  2  0  120   89   364 0.999  40.35
 5.12 Intr - 147963 147851  113  1  2  109  115   124 0.986  17.80
 5.11 Intr - 154788 154608  181  0  1   65   25    81 0.385  -0.54
 5.10 Intr - 155519 155334  186  2  0   54   64    59 0.261   0.50
 5.09 Intr - 155997 155891  107  1  2   85   47    62 0.853   2.23
 5.08 Intr - 156330 156074  257  2  2  108   94   495 0.964  49.72
 5.07 Intr - 161934 161844   91  1  1  111  100    75 0.514  10.55
 5.06 Intr - 175041 175006   36  1  0  124   91    36 0.009   6.22
 5.05 Intr - 185131 185032  100  1  1   94   81    61 0.007   6.18
 5.04 Intr - 201703 201608   96  1  0  101   49    84 0.101   6.51
 5.03 Intr - 204125 204009  117  2  0   30   99    45 0.150   0.97
 5.02 Intr - 209435 209344   92  0  2   84   96    52 0.307   5.81
 5.01 Init - 209826 209814   13  0  1   78  127    -5 0.550   2.76

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 148217 148151   67  2  1  114   44   -10 0.858  -1.49
S.002 Term - 154054 153855  200  2  2   62   45   141 0.890   5.08
S.003 Term - 180352 180310   43  0  1  100   28   132 0.832   5.32


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:4558008_4770334|GENSCAN_predicted_peptide_1|82_aa
MQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPVFVGSGPGRLTPAE
GADDLNIQRVLRVNRTLFIGDS

>gi568815579r:4558008_4770334|GENSCAN_predicted_CDS_1|246_bp
atgcagaccccgcgagcgtcccctccccgcccggccctgctgcttctgctgctgctactg
gggggcgcccacggcctctttcctgaggagccgccgccgcttagcgtggcccccagggac
tacctgaaccactatcccgtgtttgtgggcagcgggcccggacgcctgacccccgcagaa
ggtgctgacgacctcaacatccagcgagtcctgcgggtcaacaggacgctgttcattggg
gacagn

>gi568815579r:4558008_4770334|GENSCAN_predicted_peptide_2|445_aa
MGVEVSGSAKCCWERKTWRMNLKKTKAGNRSQGKGPGVRADHKSCHTGLLGVPPTRQNPK
ASEHPSNSKSPFRSSLGVKDDSLSSWGPPNPQAPTAAGGIRTGRPSPPTPLRPLPRGLDP
RLVLFWAGQEAGEDSGAQVRVLRAPAATDTFFPVRPGLRPRVRGGPGRPGGGQKAFRVPG
MGLIMIVTEDPGGLPGGGGSSILKCQGYSFIGTASVSEYVDLVNPSSFIPKVGKPWSFPE
PSTGQKPYTFPRRWKEDSLVLGTEDFDKLVMRTSGQNHVCRGKTQPYPSFLSCLALGAHL
PRGCQPLGSTLPTLLRHPPLCYFQIPHLLLPPRPGNSPVPSARAGRVEGVACRGARRVEG
GAALPAPPRPRPRLRRCSHRRGNGPGPRRRLDGPPTVGRTDSASRVVTLASSCFSNTPGE
VLSQGLCMGCALCHYGRSEGANFET

>gi568815579r:4558008_4770334|GENSCAN_predicted_CDS_2|1338_bp
atgggggtggaggtctcagggagtgccaagtgctgctgggaacggaagacctggcgaatg
aacttgaagaagacaaaggcgggaaataggtcccaggggaaaggccccggggtcagagcg
gaccacaagtcctgccatacgggcctacttggtgttcctccaacacgccagaaccccaaa
gcctcagagcaccccagtaactccaagtccccgttccgctccagtctaggggtcaaagat
gacagcctcagctcttgggggcccccgaacccccaggcccccactgcagcgggggggatc
cggaccggccggccctcccctccaacaccactgcgacccctgccccgcggcctggacccg
cgactcgtcctgttctgggctggacaggaggccggagaggactcgggcgcccaagtgcgg
gttttgcgggcgcccgcggccaccgacaccttcttcccagtgcggcccgggctgcggccc
cgggtccgaggaggcccggggagacccggaggaggtcagaaggccttcagggtccccggg
atgggcctaatcatgattgtcactgaagatccaggagggcttcctggaggaggaggcagc
tccattctgaaatgccaagggtacagctttattgggacagccagtgtctctgaatatgtt
gacctggtcaacccgtcctccttcattcccaaggtgggaaaaccgtggagcttcccagag
cccagcacagggcagaagccctacacgttccccaggagatggaaagaagattccctggtt
ctggggactgaagattttgacaagctggtaatgcgcacctctggtcagaaccacgtctgc
agaggaaagacccagccatatccctcttttctcagctgcctggctctgggtgcacatctc
ccccggggctgccaacctctgggctccacactccccactctcctgcggcacccccctctc
tgctacttccagatcccccacctgctcctgcctcccaggcctggcaactctccggtccct
tccgcgcgggcggggcgagtggagggcgtggcctgccgaggggcgaggcgagtggagggc
ggggccgcgctgcccgccccgccccggccccggccccggctccggcgctgctcccaccgc
cgcggcaacggccccggcccacggaggcggctggacggacccccgacggttggacgtacg
gactctgcttcgagagtagtcacactggcctcctcctgtttctccaacaccccaggcgag
gtcctctctcagggcctttgcatgggctgtgccctctgccactacggcaggtccgagggc
gccaactttgaaacataa

>gi568815579r:4558008_4770334|GENSCAN_predicted_peptide_3|186_aa
MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML
KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGL
LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM
LDEGSL

>gi568815579r:4558008_4770334|GENSCAN_predicted_CDS_3|561_bp
atggacaccttcagcaccaagagcctggctctgcaggcgcagaagaagctcctgagtaag
atggcgtccaaggcagtggtggccgtgctggtggatgacaccagcagtgaggtgctggat
gagctgtaccgcgccaccagggagttcacgcgcagccgcaaggaggcccagaagatgctc
aagaacctggtcaaggtggccctgaagctgggactgctgctgcgtggggaccagctgggc
ggtgaggagctggcgctgctgcggcgcttccgccaccgggcgcgctgcctggccatgacg
gccgtcagcttccaccaggtggacttcaccttcgaccggcgcgtgctggccgccgggctg
ctcgagtgccgcgacctgctgcaccaggccgtgggtccccacctgaccgccaagtcccac
ggccgcatcaaccacgtgttcggccacctagccgactgcgacttcctggctgcgctctac
ggccccgccgagccctaccgctcccacctgcgcaggatctgcgagggcctgggccggatg
ctggacgagggcagcctctga

>gi568815579r:4558008_4770334|GENSCAN_predicted_peptide_4|270_aa
MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
MAYSKAAFERESDVPLKTEEFEVTKTAAPVSSSHIQLHGANAKQKEESEAPSWGKGGSQG
SGHSRSFCGFLLPAIYVSPTDLTLHITVFLSVTQDEHDRVARASCAEKAVGNSAYHQYPG
QGTQNNLPDLQQHFAIFENPCPLLTNKNGK

>gi568815579r:4558008_4770334|GENSCAN_predicted_CDS_4|813_bp
atggcggcgcccagcggagggtggaacggcgtcggcgcgagcttgtgggccgcgctgctc
ctaggggccgtggcgctgaggccggcggaggcggtgtccgagcccacgacggtggcgttt
gacgtgcggcccggcggcgtcgtgcattccttctcccataacgtgggcccgggggacaaa
tatacgtgtatgttcacttacgcctctcaaggagggaccaatgagcaatggcagatgagt
ctggggaccagcgaagaccaccagcacttcacctgcaccatctggaggccccaggggaag
tcctatctgtacttcacacagttcaaggcagaggtgcggggcgctgagattgagtacgcc
atggcctactctaaagccgcatttgaaagggaaagtgatgtccctctgaaaactgaggaa
tttgaagtgaccaaaacagcagcaccggtgtcctcaagccacattcagctgcatggcgcc
aatgctaagcagaaagaggaatcggaggcgccgagctggggcaagggtgggagccaaggg
agtggacacagcaggtctttctgtggcttcctgctgcctgccatctatgttagccccacc
gaccttaccctccacatcactgttttcctgtctgtcacccaagatgagcacgacagggtt
gccagggcctcctgtgcagaaaaggccgtgggaaacagtgcctaccaccagtaccctggc
caaggcacccaaaataaccttcctgacctgcagcagcattttgcaatctttgagaacccc
tgccccctgctgacaaacaaaaatggcaaatag

>gi568815579r:4558008_4770334|GENSCAN_predicted_peptide_5|1236_aa
MSVYAFTLCQGQCQTFYLLSDLKASGQPHEIDPSQRGADRKTVPGSHSGGGGYTQGSPSE
ALPFVSLLLLFPEQLSRSEPPTDMTGHPSGWTGHGEDHEPGQRAQREEENAALQSEQCPP
PWLPGRWMGDSMRLITLMAALAEVSWCDRTPGTPALLRSAERLMRKVKKLRLDKENTGSW
RSFSLNSEGAERMATTGTPTADRGDAAATDDPAARFQVQKHSWDGLRSIIHGSRKYSGLI
VNKAPHDFQFVQKTDESGPHSHRLYYLEVHRSWKICSDGWALGMLSFEAQPQTALTTGKG
CRGPLLQALDPHFLLWACACTQLLLQRLQCLTGLGSSAPRVPSGHGLGCMSSSSFCSHCG
PGSRETDLCGNQMVVWQTKNLKGRIIQNRGRQVTAVFRSQVFLVPVTFLTSLAVLKLQQE
SHRNRGMPYGSRENSLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRE
RKRLGVFGITSYDFHSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMD
PKICPADPAFFSFINNSDLWVANIETGEERRLTFCHQGLSNVLDDPKSAGVATFVIQEEF
DRFTGYWWCPTASWEGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGS
KNPKIALKLAEFQTDSQGKIVSTQEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFLD
RPQQWLQLVLLPPALFIPSTENEEQRLASARAVPRNVQPYVVYEEVTNVWINVHDIFYPF
PQSEGEDELCFLRANECKTGFCHLYKVTAVLKSQGYDWSEPFSPGEDEFKCPIKEEIALT
SGEWEVLARHGSKASAKACSLLGSSSCFETISIPAQIWVNEETKLVYFQGTKDTPLEHHL
YVVSYEAAGEIVRLTTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLSGPDDDPLHK
QPRFWASMMEAASCPPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKKHPTVLFVYGGP
QVQLVNNSFKGIKYLRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVE
GLQFVAEKYGFIDLSRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYT
ERYMDVPENNQHGYEAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAG
KPYQLQIYPNERHSIRCPESGEHYEVTLLHFLQEYL

>gi568815579r:4558008_4770334|GENSCAN_predicted_CDS_5|3711_bp
atgtctgtttacgcttttactctgtgccagggtcagtgccagacattctacctgctgagt
gatctgaaggcctcagggcagccccatgagatagatcccagccagaggggagcagatagg
aagacagttcctggcagccacagtggtggaggggggtacacccaggggagcccctcagag
gctctgccatttgtgtctttgctcctgctgttcccggagcagctcagtcgctccgagccc
cccacggacatgacaggacatccaagtgggtggacaggacacggcgaggatcacgaacca
ggccagcgagcacagagggaggaggaaaacgcagccctgcagagcgagcaatgcccccct
ccttggttaccagggcgctggatgggggacagcatgcggctcattaccctaatggctgcc
cttgctgaagtttcctggtgtgatcggacaccaggcacccctgccctcctgaggtcagct
gagcggttaatgcggaaggttaagaaactgcgcctggacaaggagaacaccggaagttgg
agaagcttctcgctgaattccgagggggctgagaggatggccaccaccgggaccccaacg
gccgaccgaggcgacgcagccgccacagatgacccggccgcccgcttccaggtgcagaag
cactcgtgggacgggctccggagcatcatccacggcagccgcaagtactcgggcctcatt
gtcaacaaggcgccccacgacttccagtttgtgcagaagacggatgagtctgggccccac
tcccaccgcctctactacctggaggtccacaggagttggaagatctgctcggatggctgg
gccctgggcatgctgtccttcgaggctcagccacagacagctctgactacagggaagggc
tgccgcgggcccctgctgcaggctctggatccacacttcctcctctgggcgtgtgcctgc
acgcagctcctcctgcagcgtctgcagtgcctcacgggactgggctcctctgcaccacga
gtgccttcagggcacgggttaggctgcatgtcctccagcagcttctgcagccactgtggg
cctggctcccgtgagacagacttgtgtgggaatcagatggtggtctggcaaacaaagaat
ttaaaaggaagaatcatccagaacaggggtcggcaggtgacagccgtcttcagaagtcag
gttttcctggtccctgttactttcctgacatctttggctgttctcaagctacagcaggag
agtcaccgcaacagaggaatgccatatggcagccgagagaactccctcctctactctgag
attcccaagaaggtccggaaagaggctctgctgctcctgtcctggaagcagatgctggat
catttccaggccacgccccaccatggggtctactctcgggaggaggagctgctgagggag
cggaaacgcctgggggtcttcggcatcacctcctacgacttccacagcgagagtggcctc
ttcctcttccaggccagcaacagcctcttccactgccgcgacggcggcaagaacggcttc
atggtgtcccctatgaaaccgctggaaatcaagacccagtgctcagggccccggatggac
cccaaaatctgccctgccgaccctgccttcttctccttcatcaataacagcgacctgtgg
gtggccaacatcgagacaggcgaggagcggcggctgaccttctgccaccaaggtttatcc
aatgtcctggatgaccccaagtctgcgggtgtggccaccttcgtcatacaggaagagttc
gaccgcttcactgggtactggtggtgccccacagcctcctgggaaggttcagagggcctc
aagacgctgcgaatcctgtatgaggaagtcgatgagtccgaggtggaggtcattcacgtc
ccctctcctgcgctagaagaaaggaagacggactcgtatcggtaccccaggacaggcagc
aagaatcccaagattgccttgaaactggctgagttccagactgacagccagggcaagatc
gtctcgacccaggagaaggagctggtgcagcccttcagctcgctgttcccgaaggtggag
tacatcgccagggccgggtggacccgggatggcaaatacgcctgggccatgttcctggac
cggccccagcagtggctccagctcgtcctcctccccccggccctgttcatcccgagcaca
gagaatgaggagcagcggctagcctctgccagagctgtccccaggaatgtccagccgtat
gtggtgtacgaggaggtcaccaacgtctggatcaatgttcatgacatcttctatcccttc
ccccaatcagagggagaggacgagctctgctttctccgcgccaatgaatgcaagaccggc
ttctgccatttgtacaaagtcaccgccgttttaaaatcccagggctacgattggagtgag
cccttcagccccggggaagatgaatttaagtgccccattaaggaagagattgctctgacc
agcggtgaatgggaggttttggcgaggcacggctccaaggcatcagccaaagcctgctcg
ctcctgggcagcagcagttgtttcgagaccattagcatcccagcacagatctgggtcaat
gaggagaccaagctggtgtacttccagggcaccaaggacacgccgctggagcaccacctc
tacgtggtcagctatgaggcggccggcgagatcgtacgcctcaccacgcccggcttctcc
catagctgctccatgagccagaacttcgacatgttcgtcagccactacagcagcgtgagc
acgccgccctgcgtgcacgtctacaagctgagcggccccgacgacgaccccctgcacaag
cagccccgcttctgggctagcatgatggaggcagccagctgccccccggattatgttcct
ccagagatcttccatttccacacgcgctcggatgtgcggctctacggcatgatctacaag
ccccacgccttgcagccagggaagaagcaccccaccgtcctctttgtatatggaggcccc
caggtgcagctggtgaataactccttcaaaggcatcaagtacttgcggctcaacacactg
gcctccctgggctacgccgtggttgtgattgacggcaggggctcctgtcagcgagggctt
cggttcgaaggggccctgaaaaaccaaatgggccaggtggagatcgaggaccaggtggag
ggcctgcagttcgtggccgagaagtatggcttcatcgacctgagccgagttgccatccat
ggctggtcctacgggggcttcctctcgctcatggggctaatccacaagccccaggtgttc
aaggtggccatcgcgggtgccccggtcaccgtctggatggcctacgacacagggtacact
gagcgctacatggacgtccctgagaacaaccagcacggctatgaggcgggttccgtggcc
ctgcacgtggagaagctgcccaatgagcccaaccgcttgcttatcctccacggcttcctg
gacgaaaacgtgcactttttccacacaaacttcctcgtctcccaactgatccgagcaggg
aaaccttaccagctccagatctaccccaacgagagacacagtattcgctgccccgagtcg
ggcgagcactatgaagtcacgttgctgcactttctacaggaatacctctga