GENSCAN 1.0	Date run:  8-Nov-116	Time: 11:39:47

Sequence gi568815580f:59039949_59258682 : 218734 bp : 43.25% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11636  11722   87  1  0   61  101    64 0.894   5.65
 1.02 Intr +  13216  13295   80  0  2   83   87    96 0.995   7.35
 1.03 Intr +  17092  17205  114  1  0  123   95    79 0.999  11.66
 1.04 Intr +  17242  17387  146  1  2   67   82    39 0.815   1.13
 1.05 Intr +  17924  18002   79  0  1   89   73    39 0.807   1.11
 1.06 Intr +  19537  19669  133  1  1   78   86   141 0.979  13.55
 1.07 Intr +  22885  23046  162  0  0   76   61    70 0.533   3.27
 1.08 Intr +  23408  23453   46  1  1   45   66    59 0.414  -2.62
 1.09 Intr +  28424  28566  143  0  2  102  101   127 0.696  15.47
 1.10 Term +  28893  29015  123  2  0   92   41   114 0.972   5.48
 1.11 PlyA +  29223  29228    6                               1.05

 2.00 Prom +  29748  29787   40                              -9.46
 2.01 Init +  30400  30604  205  0  1   94   31   133 0.159   7.21
 2.02 Intr +  37448  37540   93  0  0   56  100    50 0.096   2.94
 2.03 Intr +  39261  39340   80  1  2   35   77    49 0.022  -2.23
 2.04 Term +  44837  45115  279  1  0   54   38   149 0.104   1.95
 2.05 PlyA +  45947  45952    6                               1.05

 3.00 Prom +  55639  55678   40                              -3.26
 3.01 Init +  56003  56177  175  1  1   96   49   114 0.620   7.81
 3.02 Intr +  59918  60033  116  0  2  100   72    72 0.331   6.97
 3.03 Term +  75783  77333 1551  2  0   -5   43   533 0.023  29.94
 3.04 PlyA +  77466  77471    6                               1.05

 4.00 Prom +  78230  78269   40                              -2.96
 4.01 Init +  79121  79169   49  1  1   86   89    33 0.103   2.31
 4.02 Intr +  90870  91032  163  1  1  100   78    80 0.654   7.23
 4.03 Intr +  98459  98525   67  2  1   58  109     7 0.063  -1.29
 4.04 Term +  99983 100180  198  1  0   20   42   212 0.123   7.20
 4.05 PlyA + 101021 101026    6                               1.05

 5.00 Prom + 107943 107982   40                               0.14
 5.01 Init + 108206 108283   78  1  0   43   78    41 0.868  -0.34
 5.02 Intr + 109565 109674  110  1  2   82   92   142 0.914  13.08
 5.03 Intr + 112588 112737  150  1  0  103   37    72 0.686   2.88
 5.04 Term + 115740 115863  124  0  1   49   55   116 0.642   2.26
 5.05 PlyA + 116092 116097    6                               1.05

 6.04 PlyA - 116514 116509    6                               1.05
 6.03 Term - 119578 119518   61  0  1  108   49    34 0.806  -1.22
 6.02 Intr - 126806 126685  122  2  2   91   41    93 0.147   4.19
 6.01 Init - 133451 133383   69  2  0   75   98    48 0.560   5.55
 6.00 Prom - 134779 134740   40                              -0.86

 7.03 PlyA - 135695 135690    6                               1.05
 7.02 Term - 137060 137018   43  1  1  120   47    27 0.262  -1.57
 7.01 Init - 138222 138158   65  0  2   83   85    52 0.458   5.03
 7.00 Prom - 143892 143853   40                              -3.96

 8.03 PlyA - 145512 145507    6                               1.05
 8.02 Term - 161921 161866   56  0  2   76   44    80 0.835   0.12
 8.01 Init - 163150 163075   76  1  1   80  116    73 0.987  10.60
 8.00 Prom - 165405 165366   40                              -6.06

 9.00 Prom + 180174 180213   40                              -4.26
 9.01 Init + 180318 180456  139  2  1   92   92   277 0.662  26.80
 9.02 Intr + 185544 185786  243  1  0  108   93   174 0.976  17.37
 9.03 Intr + 206271 206327   57  1  0   44   95    94 0.436   4.56
 9.04 Intr + 207179 207200   22  0  1   91  102     8 0.355  -0.90
 9.05 Intr + 210871 210970  100  1  1   83   82    46 0.420   3.61
 9.06 Term + 217791 217904  114  2  0   65   46   150 0.454   7.07
 9.07 PlyA + 218138 218143    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  75960  77333 1374  2  0   70   43   449 0.960  34.73


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_1|370_aa
MPKFHWDNCRQAWWTNLLLLNNFVSVKNACNGWTWYLANDFQFHLTTPVIIFIHVKSTQI
LILLGAMLFLASFTATALITLAYKLPVVAPSETRTSRGGLLNARLFTLCPLVHGKSGYET
FGLDGKADCLLASKLLNLSTCTGVCANVTFSEQPLPIFQNKMARTVPGIEEAIVLYFVEY
YTKPYCRFGPVLVGLFLSIYMHQNHQENILRTKLQLSTKPSTGPCGRRLWAESSLRATED
MEVWKRLQALLSGSHPVPLKVTNRTHRRAKQIKGFNGKESSPGLVNRVLSWDIWSFLSSI
SYARYLVHPILIILYNGLQETLIHHTDTNMFYLFSGHRVLTFVTGLALTLFIEKPCQELK
QHLLGHECSG

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_1|1113_bp
atgcccaaattccactgggataactgccggcaagcatggtggacgaatctgctgttgcta
aataactttgtgtcggtcaagaatgcgtgcaatggctggacctggtaccttgccaatgac
ttccagttccacctcaccacaccagtgattatcttcatccatgtaaagagtacacagatc
ctcatcctccttggggccatgctgttcttggcatctttcacagccactgctctgatcacc
ttggcatataaacttcctgtcgtggctccatcagaaaccaggacttcccggggagggctg
ctgaatgccaggctgttcaccctgtgccctttggttcatggaaaaagtgggtatgaaact
tttggtctggatgggaaagctgattgccttcttgcttccaaacttctgaacctttcaacc
tgcactggtgtctgtgcaaatgtcaccttctcagagcagcctttgccgatcttccaaaat
aaaatggccagaaccgttcctggtattgaagaggcgattgtattgtatttcgtggagtac
tacacaaagccctactgccgatttgggccagttcttgtgggcctctttctgagcatttac
atgcaccaaaaccaccaggaaaacattctcagaaccaagctgcagctctctaccaagccc
tccaccggaccctgtgggcggcggctgtgggctgagtcctctttgcgtgccacggaggat
atggaggtatggaagcggctccaggctttgctgtcgggttcacaccctgttcctttaaag
gtgacaaatcgaacacacaggagagccaagcagataaaaggcttcaatggaaaagaatct
tctccaggtctggtgaaccgtgtgctttcttgggacatctggagtttcctgtccagcatc
agttatgctcgctacttggtgcatccgattctgatcatcctttacaatggccttcaggaa
acacttattcaccacactgacaccaacatgttctatcttttctctggacaccgtgtgctg
accttcgtcactgggctggccctgacgctgttcattgagaaaccatgtcaggaactgaag
cagcacctgctgggccatgaatgttctggttaa

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_2|218_aa
MTNVGGEGKAERFTHSDGHGQLTLALPASHGDHLPEDDEMRDLISLRSGPSAEEANLREW
GAKAQQPRCRGFMSNSFQKFDCEKQERDRWKLECDVGLEEVEDTKTAPLCGAGCGEGSDD
DEDAAKLRDSASSLVREIRVEVSGIPGSVDGWENCSAPGSRASDQSQPWGPARDIANLRT
NVESTPALGVKNKQGAFRDGFGMRCPRLSAPGIAQLSS

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_2|657_bp
atgaccaatgtgggtggggaggggaaggctgaacgtttcacacactctgatggccacgga
cagctaaccttggccttgccagccagccacggggatcatctccctgaggatgatgagatg
agagacctcatctccctgaggtctggtccctctgctgaagaagccaacctgagggagtgg
ggcgccaaggctcaacagccgcgctgcagggggtttatgagcaattctttccagaagttt
gactgtgaaaagcaggagagagatcgctggaagctggagtgtgatgtgggcttggaagag
gtagaggatacgaaaacagcaccattgtgtggagcaggatgtggagaagggagcgatgac
gatgaggatgctgctaagctaagggacagtgctagctctctggtgagggagatccgtgtg
gaggtctctggcattcctgggtcagtggatggctgggagaactgctcagctccaggttcc
agggcctctgatcaaagccaaccctgggggccagccagagatatcgcaaacctaaggact
aacgtggaatctacacctgccttgggagtaaagaacaagcagggtgctttccgggatggc
tttgggatgagatgcccaagacttagtgcccctggcattgctcagctctcaagctga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_3|613_aa
MGGRSRSQGTPRSPAKHQKPGERQGTESPSQALAGTTSADTLFSDFRYPELGDNPFLLFC
GSDRSCCVLAPLALEQAWTPDPGWANGKTLAVVDGLGINKIDRPLASLIKKRREKNQIDA
IKNDKGDITTDTTEIQTTIREYYKHLYANKLENLEEMDKFLDTYILPRLNQEEVESLNRP
ITGSEIEAINNSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKWGILPNSFYEA
SIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQIQQHIKKLIHHDQVGFIPGMQG
WFNIRKSINIIQHINRTKDKNHMTISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRA
IYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVPARAIRQEKEIKHIQSGK
EEVKLSLFADDMIVYLENPIISAQNLLKLIINFSKVSGYKINVQKSQAFLYTNNRQTESQ
IMSELPFTIASKRIKYLGIQLTRNVKDLSKENYKPLLNEIKEDTNKWKNIPCSWIGRINI
VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFNQKRARITKSILSQKNKAGGITLPD
FKLYYKATVTKTA

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_3|1842_bp
atggggggacgcagcagaagccaaggaacaccaagatcaccagccaagcaccagaagcca
ggggagaggcaaggaacagaatctccctcgcaggccttggcaggaaccacctctgctgac
accttgttctcagacttccggtatccagaactgggagataatccatttctgttgttctgt
ggctccgacaggagctgctgtgtccttgcacccctggccctggaacaggcttggactcct
gacccaggttgggccaatggtaaaaccctggccgtggttgatggactagggatcaacaaa
attgatagaccgctagcaagtctaataaagaagaggagagagaagaatcaaatagatgca
ataaaaaatgataaaggggatatcaccactgataccacagaaatacaaactaccatcaga
gaatactataaacacctctacgcaaataaactagaaaatctagaagaaatggataaattc
ctggacacatacatcctcccaagactaaaccaggaagaagttgaatctctaaatagaccg
ataacaggctctgaaattgaggcgataaataatagcctaccaaccaaaaaaagtccagga
ccagacggattcacagccgaattctaccagaggtacaaggaggagctggtaccattcctt
ctgaaactattccaatcaatagaaaaatggggaatcctccctaactcattttatgaggcc
agcatcatcctgataccaaagccaggcagagacacaacaaaaaaagagaactttagacca
atatccctgatgaatattgatgcaaaaatcctcaataaaatactggcaaatcaaatccag
cagcacatcaaaaagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggc
tggttcaacatacgcaaatcaataaacataatccagcatataaacagaaccaaagacaaa
aaccacatgactatctcaatagatgcagaaaaggcctttgacaaaatccaacagcccttc
atgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagct
atttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccct
ttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttg
gaagttccggccagggcaatcaggcaagagaaagaaataaagcatattcaatcaggaaaa
gaggaagtcaaattgtccctgtttgcagatgacatgattgtatatttagaaaaccccatc
atctcagcccaaaatctccttaagctgataatcaacttcagcaaagtctcaggatacaaa
atcaatgtgcaaaaatcacaagcattcttatacaccaataacagacaaacagagagccaa
atcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaa
cttacaaggaatgtgaaggacctctccaaggagaactacaaaccattgctcaatgaaata
aaagaggacacaaacaagtggaagaacattccatgctcatggataggaagaatcaatatt
gtgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagcta
ccaatgactttcttcacagaattggaaaaaactactttaaagttcaaccaaaaaagagcc
cgcattacgaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgac
ttcaaactatactacaaggctacagtaaccaaaacagcatga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_4|158_aa
MGFHRVAQAGLKLLTSGMQYCFWFTILVKRELSMDFYLVPPTIMALTYGSEKELGDSESD
KYINSKYTSKRSSAAEHFHIRCHFQWDFLPRCQVPGDPAMVRAGAVGAHLPASGLDIFGD
LKKMNKRQVTEEGGERAVAGTACASGESGLPSQGSGSQ

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_4|477_bp
atggggtttcaccgtgttgcccaggctggtctcaaactcctgacctcagggatgcagtat
tgcttctggtttactatcttggtgaagagggaactttctatggacttctacttagtccct
cctaccataatggcccttacctatgggtcagagaaagaacttggggattctgagagtgac
aagtatatcaattccaaatatacatccaagaggtcaagtgctgcagaacactttcatatc
agatgccacttccagtgggacttcctgccacggtgccaggtccccggagaccctgctatg
gtgcgtgcgggcgccgtgggggctcatctccccgcgtccggcttggatatcttcggggac
ctgaagaagatgaacaagcgccaggtgacggaggagggtggtgagcgcgccgtggccggg
accgcctgtgctagcggggagtcggggcttcccagtcagggctccggctcccagtga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_5|153_aa
MDHPPGSADHPNNCRIVKRKIEAGTKLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV
VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKF
LTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARG

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_5|462_bp
atggaccacccacctggctctgcagatcaccccaacaactgcaggattgtgaagaggaag
attgaggcaggtaccaaactctattaccaggttttaaacttcgccatgatcgtgtcttct
gcactcatgatatggaaaggcttgatcgtgctcacaggcagtgagagccccatcgtggtg
gtgctgagtggcagtatggagccggcctttcacagaggagacctcctgttcctcacaaat
ttccgggaagacccaatcagagctggtgaaatagttgtttttaaagttgaaggacgagac
attccaatagttcacagagtaatcaaagttcatgaaaaagataatggagacatcaaattt
ctgactaaaggagataataatgaagttgatgatagaggcttgtacaaagaaggccagaac
tggctggaaaagaaggacgtggtgggaagagcaagagggtga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_6|83_aa
MTDIMDVKDIKRAFMNLFLILKKFSHFSSCSFVDFSTYPFNVGAPQTSVFFASEKQEIIV
DNPSNDQYLKSQARVLSVPPIPV

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_6|252_bp
atgacagacataatggatgtcaaggacattaaaagagcttttatgaatctgtttcttata
ctcaagaagttcagccacttctcgtcatgctcctttgtggacttctccacttaccctttc
aatgttggtgctccccaaacttctgtcttctttgcttctgagaaacaggaaattattgta
gataaccccagcaatgaccagtacctgaaatcacaggctcgtgtgttatctgttcctcct
attccagtgtga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_7|35_aa
MTPSAKECAPLEVLAAIYRGCWLIGPGLSQLCIET

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_7|108_bp
atgactccaagtgcaaaggagtgtgcaccactcgaggtcctagcagccatctaccgtggc
tgctggctgatcggcccaggcttgtcacagctgtgcattgagacttga

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_8|43_aa
MGPSPSKERGAVASRLLTRSILKKEGTKSSFISGVKEKQQDSC

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_8|132_bp
atgggtcccagccccagcaaggagcggggagcagtggcaagccggctgctcaccaggtcc
atcctgaaaaaggaagggaccaagtcctccttcatcagtggtgtcaaagagaaacagcag
gacagctgttag

>gi568815580f:59039949_59258682|GENSCAN_predicted_peptide_9|224_aa
MRGRELPLVLLALVLCLAPRGRAVPLPAGGGTVLTKMYPRGNHWAVGHLMGKKSTGESSS
VSERGSLKQQLREYIRWEEAARNLLGLIEAKENRNHQPPQPKALGNQQPSWDSEDSSNFK
DVGSKGKVLECGKSKIKIKVMANVVSDQTNVHLTAGILGLSLILDKKALSTSSNSIEVNS
MNFNAVKEHNSSPATEQTWTENDFDDLREEGFRRSNYSELKEEV

>gi568815580f:59039949_59258682|GENSCAN_predicted_CDS_9|675_bp
atgcgcggccgtgagctcccgctggtcctgctggcgctggtcctctgcctggcgccccgg
gggcgagcggtcccgctgcctgcgggcggagggaccgtgctgaccaagatgtacccgcgc
ggcaaccactgggcggtggggcacttaatggggaaaaagagcacaggggagtcttcttct
gtttctgagagagggagcctgaagcagcagctgagagagtacatcaggtgggaagaagct
gcaaggaatttgctgggtctcatagaagcaaaggagaacagaaaccaccagccacctcaa
cccaaggccctgggcaatcagcagccttcgtgggattcagaggatagcagcaacttcaaa
gatgtaggttcaaaaggcaaagttctcgagtgtggaaagtccaagatcaagatcaaggtg
atggcaaatgtggtgtctgaccaaaccaatgttcatcttacagctggcattttaggcttg
tctctaattttggataaaaaggcattgtccacatcaagcaatagtatagaggtcaatagt
atgaacttcaacgctgtgaaggaacacaactcctcaccagcaacggaacaaacctggacg
gagaatgactttgatgacttgagagaagaaggcttcagacgatcaaactactccgagcta
aaggaggaagtttga