GENSCAN 1.0	Date run:  7-Nov-116	Time: 18:27:29

Sequence gi568815581f:56734796_56962788 : 227993 bp : 43.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5908   6048  141  0  0   11  101   122 0.190   5.93
 1.02 Intr +  14563  14744  182  0  2  112   51    69 0.204   4.27
 1.03 Intr +  26371  26534  164  1  2   54  102    32 0.146   0.82
 1.04 Intr +  28356  28432   77  1  2   80   81    77 0.704   5.43
 1.05 Term +  31823  31870   48  1  0  106   48    44 0.552  -0.50
 1.06 PlyA +  31952  31957    6                               1.05

 2.05 PlyA -  32459  32454    6                               1.05
 2.04 Term -  38027  37832  196  1  1   83   48   114 0.481   3.78
 2.03 Intr -  38993  38929   65  2  2   92   65    39 0.497  -0.48
 2.02 Intr -  40145  40092   54  2  0   83  115    24 0.273   3.78
 2.01 Init -  45772  45611  162  1  0   84   28   137 0.593   5.05
 2.00 Prom -  55482  55443   40                              -5.66

 3.03 PlyA -  55696  55691    6                               1.05
 3.02 Term -  58265  57582  684  2  0   68   35   836 0.999  69.94
 3.01 Init -  62854  62783   72  1  0   82   60   121 0.972   7.77
 3.00 Prom -  66349  66310   40                              -3.66

 4.00 Prom +  69613  69652   40                              -3.96
 4.01 Init +  72692  72710   19  1  1   39  110    36 0.312   1.09
 4.02 Intr +  74501  74608  108  0  0   39   62    85 0.084   1.26
 4.03 Intr +  78876  78919   44  1  2   89   80    35 0.070   0.76
 4.04 Intr +  88184  88283  100  1  1   56   76    73 0.005   2.58
 4.05 Intr +  98332  98489  158  2  2   34   69   162 0.013   8.63
 4.06 Intr +  99983 100464  482  1  2   88   80   797 0.121  70.73
 4.07 Intr + 109224 109383  160  0  1  129   36    53 0.884   4.19
 4.08 Intr + 113127 113270  144  2  0  133   62    63 0.994   8.68
 4.09 Intr + 113901 114058  158  2  2   55  123    55 0.966   4.51
 4.10 Intr + 114386 114437   52  2  1   90   95     8 0.939   0.61
 4.11 Intr + 121717 121830  114  0  0   84   93    43 0.913   5.04
 4.12 Intr + 126996 127123  128  2  2   60   91    47 0.972   1.68
 4.13 Intr + 127345 127456  112  1  1   88   73    65 0.824   5.38
 4.14 Intr + 142540 142644  105  0  0  106   28    90 0.377   5.21
 4.15 Term + 143233 143520  288  0  0  -61   48   457 0.796  22.18
 4.16 PlyA + 147991 147996    6                               1.05

 5.11 PlyA - 148795 148790    6                               1.05
 5.10 Term - 150046 149845  202  0  1   75   49   203 0.623  11.96
 5.09 Intr - 157434 156909  526  1  1   62   32   548 0.066  38.60
 5.08 Intr - 160646 160548   99  0  0  100   65    95 0.984   8.48
 5.07 Intr - 160809 160726   84  1  0  102  110    19 0.968   5.29
 5.06 Intr - 161157 161131   27  1  0   68   99    29 0.512   0.09
 5.05 Intr - 164385 164320   66  1  0   70  100    33 0.732   1.58
 5.04 Intr - 166783 166624  160  1  1   61   60   198 0.998  13.86
 5.03 Intr - 169693 169460  234  1  0   89   92   349 0.999  33.29
 5.02 Intr - 173768 173673   96  2  0  116  100    97 0.998  13.91
 5.01 Init - 179193 178597  597  0  0   95   75   920 0.987  86.68
 5.00 Prom - 186464 186425   40                              -2.46

 6.08 PlyA - 186606 186601    6                               1.05
 6.07 Term - 204359 204276   84  2  0  104   48    42 0.773  -0.55
 6.06 Intr - 207328 207240   89  2  2  111  100    80 0.970  11.19
 6.05 Intr - 211716 211647   70  0  1   64  105     7 0.484  -1.25
 6.04 Intr - 214639 214592   48  1  0   88  116    40 0.924   5.68
 6.03 Intr - 214972 214886   87  1  0   79   71    36 0.630   1.17
 6.02 Intr - 216201 215418  784  2  1   89   22   327 0.389  17.68
 6.01 Init - 226224 225980  245  0  2   84   85   263 0.996  22.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  98579  98313  267  2  0   70   49   341 0.972  22.23
S.002 Term + 127817 127996  180  1  0   62   37   122 0.855   2.11
S.003 Term - 157434 156905  530  1  2   62   48   560 0.920  43.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_1|203_aa
MFYSNPKACINAVLIEEYQVECTFFSETFPPPNPLQEDKSTVGSWQNALACQVHAHTRSW
LLSLRSLYICSPVTTLFTHNSDADQPLPPPSSRMDGKGYTHSSRTQGRFQALERSIYWLS
LERAPVSELSGAKIKRYFLFTFHNGKQDPPSQATLCDCVLHKALITSKEHIGEYDNDHTL
SLLPVYKKRWVNWVAGSKSSNTK

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_1|612_bp
atgttttattctaatccaaaagcatgcataaatgctgtattgattgaagagtaccaggta
gaatgcacgttcttctcagagaccttccccccacccaaccctctccaagaagacaaaagc
actgttggcagctggcagaatgccctggcctgtcaagtgcacgcacatacacgatcatgg
ctcctgagtctacgcagcctttacatttgctccccagtgaccacactgttcactcacaac
tctgatgcagatcagcctctgcctccaccatcttctcggatggatggcaaaggttacacc
cattccagcaggactcagggaaggttccaggccttagaaaggagcatctattggctgagc
ctagaaagggcacctgtgtctgagctgtcaggagcaaagataaagaggtatttcttattc
accttccacaatgggaagcaagatcctccatcccaggccaccctgtgtgactgtgtatta
cacaaagccttgatcacttcaaaagagcacatcggagaatatgacaatgaccatactctt
agtctgcttcctgtctataagaagagatgggtcaactgggtagcaggctccaaatcttca
aacactaaataa

>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_2|158_aa
MGCMCARACVGAGGGDTAPATPPPVHTELLCAKSDLTATLAARSEGGRGGCEGPMRKPKW
SKVTDWFKIAQMLLTLDVAVSSLILIFLLWHPGWRCVHSANSSERTLESKFKSGQKCCME
RGLNPAALPRQEAGCMLDLLYDVQPMYADDGGDDILIR

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_2|477_bp
atggggtgtatgtgcgcgcgtgcttgcgttggggcgggcggtggagacacagcaccggcc
acacccccgccagtccacacagagctgctctgtgcaaagagcgacttgactgcgactctg
gccgcccggagcgagggcgggcgcgggggctgcgagggcccgatgaggaaacctaaatgg
agtaaagtgactgattggttcaagattgcacagatgctgctgacactggacgtggctgtg
agctctttgatcctcattttcctcctctggcatccagggtggcgctgtgttcacagtgca
aatagctcagaaaggacactggagtcaaagtttaagtcagggcagaagtgttgcatggaa
agaggactcaatccggcggctttgccaagacaggaagcaggctgtatgttggatttgctc
tacgatgttcaaccaatgtatgcagatgatgggggtgatgatatattgatccgctga

>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_3|251_aa
MALCYLCCLLPSLVVAHLPLLIILSPPFPLSSSSFLFFIIIITITTTNIITITITITITT
IATIITITHTIITTTITPTTITTTTTTTTITTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTSPSPPSSSSPLPPSSPSTPSSPSPPSAPSPPPPHHHYHHHHHNHHH
YYHHHNHHHHHHCHTIITTTTTTTTTIIIIITTTTIITIITITTTTITIITITATPSSPP
PPLPSQSLSLS

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_3|756_bp
atggccctctgttatttgtgctgtctgctcccttctctggtggtagcacacctgccactc
ctcatcatcctgtctcctccttttcccctctcctcctcctccttcttgttcttcatcatc
atcatcacaatcaccaccaccaacatcatcaccatcactatcaccatcaccatcaccacc
atcgccaccatcatcaccattacccacaccatcatcaccaccaccatcacccccaccacc
atcaccaccaccaccaccaccaccaccatcaccaccaccaccaccaccaccaccaccacc
accaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccaccacc
accaccaccaccaccaccaccaccaccaccaccaccaccacctcaccatcaccaccatca
tcatcgtcaccattgccaccatcatcaccatcaaccccatcatcaccatcaccaccatca
gcaccatcaccaccaccaccacatcaccattatcaccaccaccaccataaccatcatcac
tattaccatcaccacaatcaccatcatcaccatcactgccacaccatcatcaccaccacc
accaccaccaccaccactatcatcattatcatcaccaccaccaccatcataaccatcatc
actattaccaccaccacaatcaccatcatcaccatcactgccacaccatcatcaccacca
ccaccactaccatcacaatcattatcattatcctaa

>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_4|723_aa
MSDGIPAPYCVQKPNSAVASKYLPTQPHNNLAMPSAIIPQNPDFEQKPTAPAPSRYQVRT
AKVSIMFLMASVRLLSNLNRDKGALAQAESRRKPLSAAVRAGAVPVPLWIPCFFGGAEQR
CFRVRVLRVADVLQAAARVVAAQVSSLEKMEAERRPAPGSPSEGLFADGHLILWTLCSVL
LPVFITFWCSLQRSRRQLHRRDIFRKSKHGWRDTDLFSQPTYCCVCAQHILQGAFCDCCG
LRVDEGCLRKADKRFQCKEIMLKNDTKVLDAMPHHWIRGNVPLCSYCMVCKQQCGCQPKL
CDYRCIWCQKTVHDECMKNSLKNEKCDFGEFKNLIIPPSYLTSINQMRKDKKTDYEVVFD
VTKTPPIKALQLCTLLPYYSARVLVCGGDGTVGWVLDAVDDMKIKGQEKYIPQVAVLPLG
TGNDLSNTLGWGTGYAGEIPVAQVLRNVMEADGIKLDRWKVQVTNKGYYNLRKPKEFTMN
NYFSVGPDALMALNFHAHREKAPSLFSSRILNKLELDGERVALPSLEGIIVLNIGYWGGG
CRLWEGMGDETYPLARHDDGLLEVVGVYGSFHCAQIQVKLANPFRIGQAHTVRQTATSVQ
MTAKYSEKVTHPNSGVTNMRIPFSLQLELLHDDDEEERRGRGRGRGRRRRKKRKKKKKKK
NKKKKKKKKKKKKKKKKKKKEKEKKKKKKSGWILEGQNAKVKIAEILDLGEHSPLGETGQ
RMK

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_4|2172_bp
atgtctgacgggatcccagctccctactgtgtacagaaacccaactctgctgtggcatcc
aagtaccttccaacccagcctcacaacaacctggcgatgccatctgccatcattccacaa
aacccagactttgagcagaaacctacagccccggcacctagcaggtaccaggtgaggaca
gccaaggtcagcatcatgttcctgatggccagtgtcaggcttctctccaacttaaacagg
gacaaaggagcattggcacaggcagaatcacgaaggaagccgctgagtgcagctgtgcgc
gccggggcggtgcctgtgcctctctggattccgtgtttcttcgggggtgctgagcagcgg
tgcttccgcgtccgcgttctccgggtagctgatgtgctgcaggctgcagcccgcgtggtc
gcggctcaggtatcgtccttggagaagatggaagcggagaggcggccggcgccgggctcg
ccctccgagggcctgtttgcggacgggcacctgatcttgtggacgctgtgctcggtcctg
ctgccggtgttcatcaccttctggtgtagcctccagcggtcgcgccggcagctgcaccgc
agggacatcttccgcaagagcaagcacgggtggcgcgacacggacctgttcagccagccc
acctactgctgcgtgtgcgcgcagcacattctgcagggcgccttctgcgactgctgcggg
ctccgcgtggacgagggctgcctcaggaaggccgacaagcgcttccagtgcaaggagatt
atgctcaagaatgacaccaaggtcctggacgccatgccccaccactggatccggggcaac
gtgcccctgtgcagttactgtatggtttgcaagcagcagtgtggctgtcaacccaagctt
tgcgattacaggtgcatttggtgccagaaaacagtacatgatgagtgcatgaaaaatagt
ttaaagaatgaaaaatgtgattttggagaattcaaaaacctaatcattccaccaagttat
ttaacatccattaatcagatgcgtaaagacaaaaaaacagattatgaagtggtttttgat
gtaactaaaactcctcctatcaaagccctacaactctgtactcttctcccatattattca
gctcgagtacttgtttgtggaggggatgggactgtagggtgggtcctggatgcagttgat
gacatgaagattaagggacaagaaaagtacattccacaagttgcagttttgcctctggga
acaggcaacgatctatccaatacattgggttggggtacaggttatgctggagaaattcca
gttgcgcaggttttgcgaaatgtaatggaagcagatggaattaaactagatcgatggaaa
gttcaagtaacaaataaaggatactacaacttaagaaaacccaaggaattcacaatgaac
aactatttttctgttggacctgatgctctcatggctctcaattttcatgctcatcgtgag
aaggcaccatctctgttttctagcagaattcttaataagctagaactggatggtgagcga
gtagcactgcccagcttggaaggtattatagttctgaacatcggatactggggcggtggc
tgcagactatgggaagggatgggggacgagacttaccctctagccaggcatgacgatggt
ctgctggaagtcgttggagtatatgggtctttccactgtgctcagattcaagtaaaactg
gctaatccttttcgaataggacaggcacatacagtgaggcagactgccacgtcggtccaa
atgacagccaagtactcagagaaggtgacccaccccaactcaggagtaaccaacatgcga
atcccattctctttgcagttggagctattacatgatgatgatgaagaagaaagaagagga
agaggaagaggaagaggaagaagaagaagaaagaagaggaagaagaagaagaagaagaag
aacaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
gagaaggagaagaagaagaaaaaaaaaagtgggtggattcttgaagggcaaaatgctaag
gtgaaaatagcagagatcctggaccttggagaacactcacctttaggggagactggacag
aggatgaaatga

>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_5|696_aa
MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR
PQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCLKEAAVKTCL
VCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICL
VEHKTCSPASLSQASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQ
LQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLT
KRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTP
SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
EAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVAS
VAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPES
RLGRNSASWCVEWFNTKISAWHNNVEKTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLM
YKFRVDFTEALYPAFWVFSAGATLSICSPKNVKGHELIQDLLSSLHLDSSYPPDAGLSDD
DEPPNASLPPDPPLLTVPQMHSVCDQWLQDAFHISL

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_5|2091_bp
atggcagagctgtgccccctggccgaggagctgtcgtgctccatctgcctggagcccttc
aaggagccggtcaccactccgtgcggccacaacttctgcgggtcgtgcctgaatgagacg
tgggcagtccagggctcgccatacctgtgcccgcagtgccgcgccgtctaccaggcgcga
ccgcagctgcacaagaacacggtgctgtgcaacgtggtggagcagttcctgcaggccgac
ctggcccgggagccacccgccgacgtctggacgccgcccgcccgcgcctctgcacccagc
ccgaatgcccaggtggcctgcgaccactgcctgaaggaggccgccgtgaagacgtgcttg
gtgtgcatggcctccttctgtcaggagcacctgcagccgcacttcgacagccccgccttc
caggaccacccgctgcagccgcccgttcgcgacctgttgcgccgcaaatgttcccagcac
aatcggctgcgggaatttttctgccccgagcacagcgagtgcatctgccacatctgcctg
gtggagcataagacctgctctcccgcgtccctgagccaggccagcgccgacctggaggcc
accctgaggcacaaactaactgtcatgtacagtcagatcaacggggcgtcgagagcactg
gatgatgtgagaaacaggcagcaggatgtgcggatgactgcaaacagaaaggtggagcag
ctacaacaagaatacacggaaatgaaggctctcttggacgcctcagagaccacctcgaca
aggaagataaaggaagaggagaagagggtcaacagcaagtttgacaccatttatcagatt
ctcctcaagaagaagagtgagatccagaccttgaaggaggagattgaacagagcctgacc
aagagggatgagttcgagtttctggagaaagcatcaaaactgcgaggaatctcaacaaag
ccagtctacatccccgaggtggaactgaaccacaagctgataaaaggcatccaccagagc
accatagacctcaaaaacgagctgaagcagtgcatcgggcggctccaggagcccaccccc
agttcaggtgaccctggagagcatgacccagcgtccacacacaaatccacacgccctgtg
aagaaggtctccaaagaggaaaagaaatccaagaaacctccccctgtccctgccttaccc
agcaagcttcccacgtttggagccccggaacagttagtggatttaaaacaagctggcttg
gaggctgcagccaaagccaccagctcacatccgaactcaacatctctcaaggccaaggtg
ctggagaccttcctggccaagtccagacctgagctcctggagtattacattaaagtcatc
ctggactacaacaccgcccacaacaaagtggctctgtcagagtgctatacagtagcttct
gtggctgagatgcctcagaactaccggccgcatccccagaggttcacatactgctctcag
gtgctgggcctgcactgctacaagaaggggatccactactgggaggtggagctgcagaag
aacaacttctgtggggtaggcatctgctacggaagcatgaaccggcagggcccagaaagc
aggctcggccgcaacagcgcctcctggtgcgtggagtggttcaacaccaagatctctgcc
tggcacaataacgtggagaaaaccctgccctccaccaaggccacgcgggtgggcgtgctt
ctcaactgtgaccacggctttgtcatcttcttcgctgttgccgacaaggtccacctgatg
tataagttcagggtggactttactgaggctttgtacccggctttctgggtattttctgct
ggtgccacactctccatctgctcccccaaaaatgtgaaaggtcatgagctcatccaggac
ttgctatcctccctgcatttagacagttcctacccacctgatgctggcctgtctgatgat
gatgagcctcccaatgccagcctgccccccgacccgccactcctcactgtgccccagatg
cacagtgtttgtgaccagtggctgcaggatgccttccacatcagcctctga

>gi568815581f:56734796_56962788|GENSCAN_predicted_peptide_6|468_aa
MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTNPVETPKKDYSLLPLLA
AAPQVGEKIAFKLLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFD
LVYHNENGAEVVEYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA

>gi568815581f:56734796_56962788|GENSCAN_predicted_CDS_6|1407_bp
atggcagcttccgagacggttaggctacggcttcaatttgattacccgccgccagctacc
ccgcactgtacggccttctggcttctggtcgacttgaacagatgccgagtcgtcacagat
ctcattagtctcatccgccagcgcttcggcttcagttctggggccttcctaggcctctac
ctggagggggggctcttgccccccgccgagagcgcgcgccttgtgagagacaacgactgc
ctcagagttaaattagaagagagaggagttgctgagaattctgtagtcatcagtaatggt
gacattaatttatctcttagaaaagcaaagaagcgggcatttcagttagaggagggtgaa
gaaactgaaccagattgcaaatattcaaagaagcattggaagagtcgagagaacaataac
aataatgagaaggtcttggatctggaaccaaaagctgtcacagatcagactgtcagcaaa
aaaaacaagagaaaaaataaagcaacctgtggcacagtgggtgatgataacgaagaggcc
aaaagaaaatcaccaaagaaaaaggagaaatgtgaatataaaaaaaaggctaagaatccc
aagtctccgaaagtacaggcagtgaaagactgggccaatcagagatgtagttctccaaaa
ggttctgctagaaacagccttgttaaagccaaaaggaaaggtagtgtaagcgtttgctca
aaagagagtcccagttcctcctcggagtctgaatcttgtgatgaatctatcagtgatggt
cccagcaaagtcactttggaggccagaaattcctcagagaaattaccaactgagttatca
aaggaagaaccctctaccaaaaatacaactgcagacaaactggctataaaacttggcttt
agccttacccccagcaagggcaagacctctggaacaacatcttccagttcagactctagt
gcagagtcagacgaccaatgcttgatgtcatcgagcaccccggagtgtgctgcgggtttc
ttaaagacaaatccagtagagacacccaagaaggactatagtctgttaccactgttagca
gctgcccctcaagttggagaaaagattgcatttaagcttttggagctaacatccagttac
tctcctgatgtctctgactacaaggaaggaagaatattaagccacaatccagagacccag
caagtagatatagaaattctttcatccttacctgccttgagagaacctgggaaatttgat
ttagtttatcacaatgaaaatggagccgaggtagtggagtacgctgtgacacaggagagc
aagatcactgtattttggaaagagttgattgacccaagactgattattgaatctccaagt
aacacatcaagtacagaacctgcctga