GENSCAN 1.0	Date run:  6-Nov-116	Time: 05:18:54

Sequence gi568815582r:66517280_66796525 : 279246 bp : 45.47% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 Intr -    598    510   89  0  2   63   66    98 0.040   4.71
 1.05 Intr -  11788  11715   74  1  2  131   79    18 0.743   3.40
 1.04 Intr -  14190  14101   90  0  0   92   96    54 0.888   6.79
 1.03 Intr -  19738  19685   54  1  0  120  105    48 0.991   8.88
 1.02 Intr -  24674  24600   75  2  0   67   77    87 0.922   5.21
 1.01 Init -  25215  25213    3  0  0   70   66     0 0.035  -4.00
 1.00 Prom -  25528  25489   40                              -8.26

 2.00 Prom +  26729  26768   40                              -0.46
 2.01 Init +  35437  35514   78  0  0   88   81   102 0.957  10.56
 2.02 Intr +  40911  41069  159  2  0   97   89    15 0.806   2.68
 2.03 Intr +  45843  45938   96  2  0   92   98   103 0.958  11.91
 2.04 Term +  45972  46070   99  2  0   67   40     7 0.201  -8.07
 2.05 PlyA +  46152  46157    6                               1.05

 3.00 Prom +  47654  47693   40                              -5.16
 3.01 Init +  49235  49681  447  1  0  105   85   284 0.603  25.77
 3.02 Intr +  54507  54599   93  2  0   13  116    46 0.319   0.06
 3.03 Intr +  59825  59923   99  1  0  105   98    39 0.920   6.91
 3.04 Intr +  61813  62046  234  0  0   71   59   126 0.320   5.89
 3.05 Intr +  62341  62613  273  0  0  -33   85   281 0.315  13.43
 3.06 Intr +  62747  62905  159  1  0   97   84    71 0.993   7.78
 3.07 Intr +  69718  69819  102  0  0  101   89   119 0.999  13.67
 3.08 Term +  70640  70840  201  1  0   76   38   146 0.897   5.79
 3.09 PlyA +  73974  73979    6                               1.05

 4.00 Prom +  81559  81598   40                              -1.96
 4.01 Init +  87527  87673  147  1  0   95  109   141 0.572  16.99
 4.02 Intr +  91030  91185  156  0  0  128   77   135 0.996  16.61
 4.03 Intr +  92156  92251   96  1  0   93   72   210 0.983  20.11
 4.04 Intr +  92604  92724  121  2  1  115  121   196 0.998  25.67
 4.05 Intr +  95614  95691   78  2  0  125   35    50 0.481   2.92
 4.06 Term + 100748 100857  110  0  2  116   49    59 0.344   3.47
 4.07 PlyA + 101981 101986    6                               1.05

 5.07 PlyA - 103327 103322    6                               1.05
 5.06 Term - 104943 104779  165  0  0   69   55   273 0.672  20.02
 5.05 Intr - 106223 106125   99  2  0  102   91    20 0.935   4.01
 5.04 Intr - 119302 119126  177  1  0   81   79   132 0.813  11.72
 5.03 Intr - 158485 158462   24  1  0   85  103    53 0.383   4.72
 5.02 Intr - 178960 178844  117  1  0   67   69    55 0.482   2.16
 5.01 Init - 179246 179061  186  2  0   91   66   382 0.936  35.36
 5.00 Prom - 190384 190345   40                              -4.16

 6.17 PlyA - 190660 190655    6                               1.05
 6.16 Term - 206543 206443  101  0  2  125   46    76 0.987   5.39
 6.15 Intr - 208665 208549  117  1  0   97   92    62 0.990   7.94
 6.14 Intr - 211000 210922   79  1  1   60   65    22 0.489  -3.78
 6.13 Intr - 211820 211761   60  2  0   77  110   107 0.879  10.73
 6.12 Intr - 212944 212833  112  0  1   90   61    76 0.489   5.48
 6.11 Intr - 217032 216953   80  0  2   90    8    66 0.549  -2.85
 6.10 Intr - 218965 218796  170  2  2  105   93   111 0.980  12.97
 6.09 Intr - 225389 225159  231  0  0   81   65   211 0.924  15.84
 6.08 Intr - 232034 231918  117  0  0   77  101   114 0.991  12.04
 6.07 Intr - 234067 233994   74  0  2  129   97    75 0.613  11.55
 6.06 Intr - 234320 234206  115  0  1   35   77   185 0.001  11.61
 6.05 Intr - 242011 241862  150  2  0  105   25    55 0.152   1.03
 6.04 Intr - 257964 257839  126  1  0   75   83    65 0.943   5.35
 6.03 Intr - 260055 259924  132  1  0   58  103    74 0.961   6.52
 6.02 Intr - 261736 261584  153  2  0   50   78    92 0.881   4.44
 6.01 Init - 264601 264595    7  1  1   45  121     0 0.448   0.09
 6.00 Prom - 273967 273928   40                              -2.56


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  31730  31699   32  0  2  106  103    22 0.831   3.35
S.002 Term + 189320 189439  120  1  0  102   46    77 0.871   3.37
S.003 Init - 234312 234206  107  0  2  110   77   167 0.998  17.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_1|129_aa
MICVEGNIASGKTTCLEFFSNATDVEVLTEPVSKWRNVRGHNPLGLMYHDASRWGLTLQT
YVQLTMLDRHTRPQVSSVRLMERSIHSARYIFVENLYRSGKMPEVDYVVLSEWFDWILRN
MDVSVDLIX

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_1|387_bp
atgatctgtgtcgagggcaatattgcaagtgggaagacgacatgcctggaattcttctcc
aacgcgacagacgtcgaggtgttaacggagcctgtgtccaagtggagaaatgtccgtggc
cacaatcctctgggcctgatgtaccacgatgcctctcgctggggtcttacgctacagact
tatgtgcagctcaccatgctggacaggcatactcgtcctcaggtgtcatctgtacggttg
atggagaggtcgattcacagcgcaagatacatttttgtagaaaacctgtatagaagtggg
aagatgccagaagtggactatgtagttctgtcggaatggtttgactggatcttgaggaac
atggacgtgtctgttgatttgatagnn

>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_2|143_aa
MDNVQPKIKHRPFCFSVKGHVKMLRLALTVTSMTFFIIAQAPEPYIVITGFEVTVILFFI
LLYVLRLDRLMKWLFWPLLDIINSLVTTVFMLIVSVLALIPETTTLTVGGGVLSECKFTW
KTDVRIESYTIFILEIPRPIYNA

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_2|432_bp
atggataacgtgcagccgaaaataaaacatcgccccttctgcttcagtgtgaaaggccac
gtgaagatgctgcggctggcactaactgtgacatctatgaccttttttatcatcgcacaa
gcccctgaaccatatattgttatcactggatttgaagtcaccgttatcttatttttcata
cttttatatgtactcagacttgatcgattaatgaagtggttattttggcctttgcttgat
attatcaactcactggtaacaacagtattcatgctcatcgtatctgtgttggcactgata
ccagaaaccacaacattgacagttggtggaggggttttatcagaatgcaaatttacttgg
aaaacagatgtaagaatagaaagctatactatattcatccttgagattcctaggccaata
tacaatgcctag

>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_3|535_aa
MDPEHAKPESSEAPSGNLKQPETAAALASSGSVVSSVPKAQRNISAKTAPRKHPAVSIRS
AQSAAAARPQGSEGTAPSRKATTRPPPKPTLPPPTPSAHTESKLLNEMAIKERVEGRAKV
PYKFRDSLKRFSFSPTGMLKILRLVSGELAGSTHKAGEGQETSYFAVGFSGNAQEVSQTK
DLTNSIITAVFLSVVAILAMQEKKRRHLLYVGGPKCDHKIRAAAFIENTCFLSLPCVKVA
LYFPALGAAPAELRAVTRCSQPPDPAAERRLTDLGPPGDAGMGPRGQLRAEAAKGAKPEP
APAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKHEVGTRRGCRRYRW
ELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITMEISFFSFFILLYS
FAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLLAVILIGAAGVFAF
IDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKPPGPAKGKK

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_3|1608_bp
atggatcctgaacacgccaaacctgagtcatccgaggcaccttcagggaacttgaaacaa
ccggagactgccgcagccctggcaagtagcggcagcgtagtgagttctgtacccaaggca
cagcgcaacatctcagcgaagaccgcaccccggaagcaccccgcagtctcaattcgcagt
gcgcagtccgcagccgccgcacgtccccaaggcagtgagggcaccgcaccctcaaggaaa
gccaccacacgcccacccccaaagcccacactcccaccccccacgccctctgcacacact
gaatccaaactcttaaatgagatggcgatcaaagagcgcgtggagggccgagccaaagtc
ccgtacaaattcagggacagcctcaaacgtttctccttctcgcccactggaatgttgaag
atcctgagactggtgagcggagagctggctgggtccacacataaagctggagagggccag
gagacatcatactttgctgtagggttcagtggtaatgcccaagaagtatcccagacaaag
gatcttaccaacagtatcattacagctgtgttcctttcagtagttgccatcttggccatg
caagaaaagaaaagaaggcatttactctatgtcggggggcctaaatgtgaccataaaatt
agggctgctgcttttatcgagaacacctgcttcctctcgttgccttgtgtgaaagtcgcg
ttgtattttcctgcgcttggcgctgcgcccgcggagctcagggccgtgacccggtgctcg
cagccccccgaccccgcagcggagcggcggcttacagacctggggccacctggagacgcc
gggatgggaccgcgagggcagctccgcgcggaggcggcaaagggggccaagccagagcca
gcaccagctccacctccacccggggccaaacccgaggaagacaagaaggacggtaaggag
ccatcggacaaacctcaaaaggcggtgcaggaccataaggagccatcggacaaacctcaa
aaggcggtgcagcccaagcacgaagtgggcacgaggagggggtgtcgccgctaccggtgg
gaattaaaagacagcaataaagagttctggctcttggggcacgctgagatcaagattcgg
agtttgggctgcctaatagctgcaatgatactgttgtcctcactcaccgtgcaccccatc
ttgaggcttatcatcaccatggagatatccttcttcagcttcttcatcttactgtacagc
tttgccattcatagatacatacccttcatcctgtggcccatttctgacctcttcaacgac
ctgattgcttgtgcgttccttgtgggagccgtggtctttgctgtgagaagtcggcgatcc
atgaatctccactacttacttgctgtgatccttattggtgcggctggagtttttgctttt
atcgatgtgtgtcttcaaagaaaccacttcagaggcaagaaggccaaaaagcatatgctg
gttcctcctccaggaaaggaaaaaggaccccagcagggcaagggaccagaacccgccaag
ccaccagaacctggcaagccaccagggccagcaaagggaaagaaatga

>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_4|235_aa
MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV
ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA
IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEGLQPFNV
SAKNQHKETKQSLVCIWAADLAVCGPHQPTKLLGLDVGADKIRQTWKKPWILQLH

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_4|708_bp
atgtggcccccagaccccgaccccgacccggaccccgagcctgccggcggctcccgtccc
ggccccgcggtccccgggctccgcgccctgctgccggcgcgggctttcctctgctctctc
aaaggccgcctcctgctggccgagtcgggtctctcattcatcacttttatctgctatgtg
gcgtcctcagcatctgccttcctcacagcgcctctgctggagttcctgctggccttgtac
ttcctctttgctgatgccatgcagctgaatgacaagtggcagggcttgtgctggcccatg
atggacttcctgcgctgtgtcaccgcggccctcatctactttgctatctccatcacggcc
atcgccaagtactcggatggggcttccaaagccgctggggtgtttggcttctttgctacc
atcgtgtttgcaactgatttctacctgatctttaacgacgtggccaaattcctcaaacaa
ggggactctgcagatgagaccacagcccacaagacagaaggccttcagccctttaacgtc
tctgccaaaaaccagcacaaggagacaaagcagagccttgtctgtatctgggcagcagac
ctggccgtgtgtggacctcaccagcctaccaagctgttgggcctggacgtgggtgctgat
aaaataagacaaacctggaaaaaaccctggattctgcaacttcactag

>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_5|255_aa
MRSGEELDGFEGEASSTSMISGASSPYQPTTEPVSQRRGLAGLRCDPDYLRGALGRLKVA
QVAGARSSRPLSLVGSRDHSAAFSGDPAFGQSLPFPGRQPQCVALVEVVILALIAFICIE
TIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLF
FIASIVLAALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRVSVRQQSTNDYIRARTE
SRDVDSRPEIQRLDT

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_5|768_bp
atgcggagcggcgaggagctggacggcttcgagggcgaggcctcgagcacctccatgatc
tcgggcgccagcagcccgtaccagcccaccaccgagccggtgagccagcgccgcgggctg
gccggcctgcgctgcgaccccgactacctgcgcggcgcgctcggccgcctcaaggtcgcc
caagtggccggagcccgctcctcgcgccccctctccctcgtggggtcccgggaccactct
gcagccttctctggggaccccgccttcggccagagcctgcccttcccaggccggcagcct
cagtgtgtggcgctggtggaggtggtgatcttggccctgattgcattcatctgcatagag
accatcatggcatgctccccgtgtgaaggcctctacttttttgagtttgtgagctgcagt
gcgtttgtggtgactggcgtcttgctgattatgttcagtctcaacctgcacatgaggatc
ccccagatcaactggaatctgacagatttggtcaacactggactcagcgctttccttttc
tttattgcttcaatcgtactggctgctttaaaccatagagccggagcagaaattgctgcc
gtgatatttggcttcttggcgactgcggcatatgcagtgaacacattcctggcagtgcag
aaatggagagtcagcgtccgccagcagagcaccaatgactacatccgagcccgcacggag
tccagggatgtggacagtcgccctgagatccagcgcctggacacgtga

>gi568815582r:66517280_66796525|GENSCAN_predicted_peptide_6|607_aa
MKAYVQKYFVSVGGLDVLSQVLMQLESDSHETLSSAKLAVVVTKTVDACIADNPTFGIVL
SKYHIVSKLLALLLHESLDSGEKFSIMLTLGHCTEDCEENQYDLFKNNGLPLMIQALTES
QNEELNKAATFVLHNCKKISCIAVEKSLNSRNFSKLLHSCPYQCDRHKVIVEAEDRYKSE
LRKSLICNKIGKMAPVGVEKKLLLGPNGPAVAAAGDLTSEEEEGQSLWSSILSEVSTRAR
SKLPSGKNILVFGEDGSGKTTLMTKLQGAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWI
LDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPE
KMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVL
VVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRPAGWDNEKKIAILHENFTTVKPEDAYED
FIVKPPVRKLVHDKELAAEDEQVFLMKQQALVNSQFVPLFAVTPCQATSHSHESFYNAAS
EGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRKPDSMVTN
SSTENEA

>gi568815582r:66517280_66796525|GENSCAN_predicted_CDS_6|1824_bp
atgaaagcatatgttcagaaatacttcgtatctgtgggcggactggatgtattgtctcaa
gttctcatgcagctggaatctgattcacatgagactctttccagtgctaaacttgcagtg
gttgtgacgaagactgtggatgcatgcattgctgataatcctacttttgggatagtactc
tccaagtaccacattgtttctaaacttctggcattactgcttcatgaaagtctggattca
ggagaaaaatttagcatcatgcttactcttggtcattgcacagaggattgtgaggaaaat
cagtatgacctttttaaaaacaatgggcttccactcatgattcaagccttaactgaatcg
cagaatgaggaactgaacaaagctgccacatttgtgcttcacaactgcaaaaaaattagt
tgcatagcagtagaaaaatccctgaatagccgaaactttagcaagctcttgcactcttgc
ccataccaatgtgatcgtcacaaagtcattgtggaagctgaagacagatataaaagtgaa
ctaaggaaatcacttatctgtaacaaaattggcaagatggcgccggtgggggtggagaag
aagctgctgctaggtcccaacgggcccgcggtggcggccgccggcgacctgaccagtgag
gaggaggaaggccagagcctatggtcctccattctgagcgaagtgtccacccgcgccagg
tccaagctgccgtccggcaagaacatcctggtcttcggtgaagatggttctggtaaaaca
accctcatgactaaactacaaggagctgagcatggcaaaaaaggaagaggcctagaatat
ctctacctcagtgtccatgatgaggaccgagatgatcacacgcgctgcaacgtgtggatt
ctggatggagacttgtaccacaaaggcctgctgaaatttgcagtttctgctgaatccttg
ccagagaccctcgtcatttttgttgcagacatgtctagaccttggactgtgatggaatct
ctgcagaaatgggctagtgttttacgtgagcacattgataaaatgaaaattccaccagaa
aaaatgagggagctggaacggaagtttgtgaaagattttcaagactatatggaacctgaa
gaaggttgtcaaggttccccacagagaagaggccctctgacctcaggctccgatgaagaa
aatgttgccctgcctctgggtgacaatgtgctgactcataacctggggatcccggtgttg
gtggtgtgcacaaagtgtgatgcggtgagtgtcctggagaaggagcacgattacagggat
gagcatttggactttatccagtcacacctgcggagacctgcaggctgggacaatgaaaag
aaaatagctattttacatgaaaattttacaaccgtgaagccggaagatgcatatgaagac
tttattgtgaaacctcccgtgagaaagctggtccacgacaaagagttggcagcagaagat
gagcaggtgttcctaatgaagcaacaggccttggttaatagccagtttgtccctctcttt
gcagtcactccttgccaagcaaccagccactcccacgagagcttctataatgcagcaagt
gaaggggtgttggccagcttcttcaacagtctgttgagtaaaaagacaggctctcctgga
agtcctggtgctggtggggtgcagagcacagccaagaagtcaggacaaaagactgtgttg
tcaaatgttcaggaagaactggatagaatgactcgaaagccagactctatggtaacaaac
tcttcaacagaaaatgaagcctga