Result of FASTA (omim) for pF1KE3218
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3218, 495 aa
  1>>>pF1KE3218     495 - 495 aa - 495 aa
Library: /omim/omim.rfq.tfa
  65638526 residues in 92875 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7789+/-0.000333; mu= 17.1209+/- 0.021
 mean_var=111.7867+/-23.152, 0's: 0 Z-trim(116.2): 110  B-trim: 0 in 0/51
 Lambda= 0.121305
 statistics sampled from 28342 (28461) to 28342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.306), width:  16
 Scan time:  4.780

The best scores are:                                      opt bits E(92875)
NP_056419 (OMIM: 616372) DDB1- and CUL4-associated ( 495) 3354 598.1  2e-170
XP_016876697 (OMIM: 616372) DDB1- and CUL4-associa ( 495) 3354 598.1  2e-170
XP_016876696 (OMIM: 616372) DDB1- and CUL4-associa ( 495) 3354 598.1  2e-170
XP_016876691 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876695 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876694 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876692 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
NP_001339378 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
XP_016876690 (OMIM: 616372) DDB1- and CUL4-associa ( 496) 3342 596.0 8.5e-170
NP_001156980 (OMIM: 616372) DDB1- and CUL4-associa ( 489) 3278 584.8  2e-166
NP_001339377 (OMIM: 616372) DDB1- and CUL4-associa ( 475) 2926 523.2 6.8e-148
XP_016876698 (OMIM: 616372) DDB1- and CUL4-associa ( 476) 2914 521.1 2.9e-147
XP_016876703 (OMIM: 616372) DDB1- and CUL4-associa ( 473) 2828 506.1 9.9e-143
XP_016876702 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
NP_001156981 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
XP_016876701 (OMIM: 616372) DDB1- and CUL4-associa ( 474) 2816 504.0 4.2e-142
NP_851937 (OMIM: 616372) DDB1- and CUL4-associated ( 395) 2642 473.4 5.5e-133
NP_851938 (OMIM: 616372) DDB1- and CUL4-associated ( 435) 2135 384.8  3e-106
XP_016876704 (OMIM: 616372) DDB1- and CUL4-associa ( 280) 1915 346.1 8.6e-95
NP_001339376 (OMIM: 616372) DDB1- and CUL4-associa ( 281) 1903 344.0 3.7e-94


>>NP_056419 (OMIM: 616372) DDB1- and CUL4-associated fac  (495 aa)
 initn: 3354 init1: 3354 opt: 3354  Z-score: 3181.4  bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_056 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_056 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
              430       440       450       460       470       480

              490     
pF1KE3 LLMAVGQDLYCYSYS
       :::::::::::::::
NP_056 LLMAVGQDLYCYSYS
              490     

>>XP_016876697 (OMIM: 616372) DDB1- and CUL4-associated   (495 aa)
 initn: 3354 init1: 3354 opt: 3354  Z-score: 3181.4  bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_016 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
              430       440       450       460       470       480

              490     
pF1KE3 LLMAVGQDLYCYSYS
       :::::::::::::::
XP_016 LLMAVGQDLYCYSYS
              490     

>>XP_016876696 (OMIM: 616372) DDB1- and CUL4-associated   (495 aa)
 initn: 3354 init1: 3354 opt: 3354  Z-score: 3181.4  bits: 598.1 E(92875): 2e-170
Smith-Waterman score: 3354; 99.4% identity (99.6% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQGK
       :::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
XP_016 STGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLPL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 HVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 HVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAPG
              430       440       450       460       470       480

              490     
pF1KE3 LLMAVGQDLYCYSYS
       :::::::::::::::
XP_016 LLMAVGQDLYCYSYS
              490     

>>XP_016876691 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
              490      

>>XP_016876695 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
              490      

>>XP_016876694 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
              490      

>>XP_016876692 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
              490      

>>NP_001339378 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
NP_001 GLLMAVGQDLYCYSYS
              490      

>>XP_016876690 (OMIM: 616372) DDB1- and CUL4-associated   (496 aa)
 initn: 3340 init1: 1815 opt: 3342  Z-score: 3170.0  bits: 596.0 E(92875): 8.5e-170
Smith-Waterman score: 3342; 99.2% identity (99.4% similar) in 496 aa overlap (1-495:1-496)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
XP_016 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
XP_016 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFALMAPLLFNGCRSGEIFAIDLRCGNQG
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
              430       440       450       460       470       480

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
XP_016 GLLMAVGQDLYCYSYS
              490      

>>NP_001156980 (OMIM: 616372) DDB1- and CUL4-associated   (489 aa)
 initn: 2890 init1: 1815 opt: 3278  Z-score: 3109.6  bits: 584.8 E(92875): 2e-166
Smith-Waterman score: 3278; 98.0% identity (98.0% similar) in 496 aa overlap (1-495:1-489)

               10        20        30        40        50        60
pF1KE3 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNKSRWQSRRRHGRRSHQQNPWFRLRDSEDRSDSRAAQPAHDSGHGDDESPSTSSGTAGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSVPELPGFYFDPEKKRYFRLLPGHNNCNPLTKESIRQKEMESKRLRLLQEEDRRKKIAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGFNASSMLRKSQLGFLNVTNYCHLAHELRLSCMERKKVQIRSMDPSALASDRFNLILAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TNSDRLFTVNDVTVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS
              190       200       210       220       230       240

              250       260        270       280       290         
pF1KE3 HILLCLMGLAETPGCATLLPASLFVNSHP-GIDRPGMLCSFRIPGAWSCAWSLNIQANNC
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
NP_001 HILLCLMGLAETPGCATLLPASLFVNSHPAGIDRPGMLCSFRIPGAWSCAWSLNIQANNC
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE3 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLAQQFAFMAPLLFNGCRSGEIFAIDLRCGNQG
       ::::::::::::::::::::::::::::::       :::::::::::::::::::::::
NP_001 FSTGLSRRVLLTNVVTGHRQSFGTNSDVLA-------PLLFNGCRSGEIFAIDLRCGNQG
              310       320       330              340       350   

     360       370       380       390       400       410         
pF1KE3 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGWKATRLFHDSAVTSVRILQDEQYLMASDMAGKIKLWDLRTTKCVRQYEGHVNEYAYLP
           360       370       380       390       400       410   

     420       430       440       450       460       470         
pF1KE3 LHVHEEEGILVAVGQDCYTIIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 LHVHEEEGILVAVGQDCYTRIWSLHDARLLRTIPSPYPASKADIPSVAFSSRLGGSRGAP
           420       430       440       450       460       470   

     480       490     
pF1KE3 GLLMAVGQDLYCYSYS
       ::::::::::::::::
NP_001 GLLMAVGQDLYCYSYS
           480         




495 residues in 1 query   sequences
65638526 residues in 92875 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Apr 23 11:11:42 2019 done: Tue Apr 23 11:11:43 2019
 Total Scan time:  4.780 Total Display time:  0.100

Function used was FASTA [36.3.4 Apr, 2011]
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