GENSCAN 1.0	Date run:  6-Nov-116	Time: 07:57:36

Sequence gi568815586f:130062943_130264685 : 201743 bp : 47.65% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -    310    305    6                               1.05
 1.06 Term -   1618   1493  126  1  0   90   38   107 0.006   4.18
 1.05 Intr -  18276  18149  128  1  2   35   89   101 0.544   5.30
 1.04 Intr -  19001  18896  106  2  1   96  115   -57 0.337  -2.41
 1.03 Intr -  22318  22250   69  1  0   85   96    62 0.650   6.08
 1.02 Intr -  25702  25587  116  2  2   46   85    42 0.102  -0.13
 1.01 Init -  34853  34664  190  2  1   38   48   173 0.276   7.50
 1.00 Prom -  39308  39269   40                              -5.56

 2.08 PlyA -  39385  39380    6                               1.05
 2.07 Term -  41415  41237  179  1  2  107   48    64 0.943   2.15
 2.06 Intr -  42996  42827  170  2  2   27   35   174 0.248   5.59
 2.05 Intr -  52042  51879  164  1  2   46   69    64 0.035  -0.93
 2.04 Intr -  56540  56422  119  0  2   61   78   150 0.520  11.48
 2.03 Intr -  57371  57245  127  2  1   86   30    34 0.244  -2.35
 2.02 Intr -  58147  58119   29  2  2  135   83     6 0.323   2.63
 2.01 Init -  61711  61654   58  1  1   62   94    61 0.323   5.62
 2.00 Prom -  70328  70289   40                              -5.46

 3.03 PlyA -  74126  74121    6                               1.05
 3.02 Term -  74837  74567  271  1  1   91   44   178 0.529   8.66
 3.01 Init -  82061  81922  140  2  2   64   55    83 0.304   2.21
 3.00 Prom -  93793  93754   40                              -3.36

 4.00 Prom +  94990  95029   40                              -5.06
 4.01 Sngl + 100001 101746 1746  1  0   98   47  3595 0.997 349.18
 4.02 PlyA + 102384 102389    6                               1.05

 5.00 Prom + 120567 120606   40                              -5.06
 5.01 Init + 120858 120960  103  2  1   99   68    66 0.244   4.14
 5.02 Intr + 124084 124145   62  2  2   89   96    -2 0.069  -0.85
 5.03 Intr + 131585 131709  125  1  2   88   36    78 0.078   1.98
 5.04 Intr + 135148 135281  134  1  2   71  115    69 0.430   8.19
 5.05 Term + 135398 135453   56  0  2  119   54    37 0.796   1.12
 5.06 PlyA + 137162 137167    6                               1.05

 6.06 PlyA - 140676 140671    6                               1.05
 6.05 Term - 140961 140810  152  1  2   96   43    81 0.639   2.47
 6.04 Intr - 141862 141821   42  2  0   90   55    77 0.773   2.81
 6.03 Intr - 148486 148403   84  2  0   60   60    66 0.252   0.79
 6.02 Intr - 153192 153029  164  2  2   55   84    66 0.408   2.52
 6.01 Init - 156906 156749  158  0  2   77  107   124 0.975  10.58
 6.00 Prom - 175922 175883   40                              -4.46

 7.08 PlyA - 176225 176220    6                               1.05
 7.07 Term - 178323 178039  285  0  0   65   49   161 0.848   5.30
 7.06 Intr - 179609 179477  133  1  1   39   91    64 0.027   2.45
 7.05 Intr - 185207 184703  505  0  1   66   86   540 0.081  43.64
 7.04 Intr - 188206 188008  199  1  1   90  105    -1 0.397   0.72
 7.03 Intr - 192058 191984   75  1  0   68   94    57 0.344   4.01
 7.02 Intr - 196308 196130  179  1  2   30   81    63 0.394  -0.56
 7.01 Init - 196833 196701  133  0  1   65   85    86 0.632   6.30

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  33552  33444  109  2  1   17   45   221 0.855   8.68
S.002 Term - 185207 184699  509  0  2   66   47   539 0.905  42.17


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_1|244_aa
MRAQEDAFEIPETALSLPLSGDERAKVLPSFAKGQPGSSRIEFLQGHRRFDAALTPPGPS
TVPAAQPVVLFDGSPDDLVQHLRIFHSCQACVSTASPCNWYLNGEFSNVGAESSGLRMET
RTAAQKLPLSSYHTRHLPCVGLDCSFSGILNTQTPTSVKKGSSTWVTCDLLQMTPEKLGL
PAPQIGQILPNTMNYTKHGTLMQAVVTLDPAELPILGSKGWKLDNIGVVSITAAPLIGSL
LLKP

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_1|735_bp
atgagagctcaggaagatgcctttgaaattcctgaaacagccctctctcttcccctgtct
ggagacgagagggccaaggtgctcccgtcatttgccaagggacagccaggcagctcaagg
attgaatttctccagggccaccgtcgctttgatgccgccctgacacccccagggcctagc
acagttcctgctgcccagcctgtggtcctttttgacggtagccctgatgacctggtacag
cacttacggattttccactcctgccaggcatgtgtgagcacagcctccccgtgcaattgg
tacctgaacggggaattctccaatgttggtgctgagtcatcagggctgcggatggagacc
cggactgcagctcagaagctccctttgagttcttatcacacaagacacctaccctgtgtg
gggctggactgttcattttcgggcattttaaatacacagactccaacttctgtcaaaaaa
ggttcatctacctgggttacatgtgacctgctacagatgacacctgagaagctgggtctt
ccagctccccaaatcggacaaattcttcctaacacaatgaactacacgaagcatggtact
ttgatgcaagctgtggtcaccctggacccagcagagctcccaatcttgggtagcaaggga
tggaagctggacaatattggagttgtgtccatcacagctgccccacttataggttcgctg
ctgctaaagccatag

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_2|281_aa
MHAFHDYTPLAVLSHMESGDFASSGHSVEGLLCAREWCPPAQHTGSIQGTGSGDQGATCT
FASPDRGRDTGGPQIQHKGEGAALIFMEGDEAKPAVVTEEGCVGGGADGVESRPCVVGPI
VAPTLQTKKLSPERLRNLLRVTELVGGNRVSSPGILPPELSVSIIKSAALMPRTRQKTLS
WKVNIQDWGPLRALTFHTWLVPASDPPPSDFDPCQGEEELFQALRDSLLHSSGKGKSGDT
WQMPPGRQGLHLVTAPYDVKTRARCFRRSSLKPSLIVTKST

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_2|846_bp
atgcatgccttccatgactacacccccctggccgtcctctcccacatggagtcaggagat
tttgcctcttctgggcattccgtggagggcttgttgtgcgcgagggaatggtgtcctccg
gcccagcacacgggcagcatccaaggcactgggtcaggcgaccaaggagctacctgcact
ttcgccagcccagacaggggacgggacaccggagggccccagatccaacacaaaggagag
ggagccgcgctcatcttcatggaaggggatgaagccaaacccgccgtcgtcactgaggag
ggctgcgtgggaggcggtgccgatggggtggagtccaggccctgcgtggtcggcccaatt
gttgcccccacgttgcagacgaagaaactgagccctgagaggctgagaaacctccttcgg
gtcacagagcttgtgggtggcaatcgggtttctagccctggcattctgccaccagagctt
tctgtatctattataaagagcgcggcgctcatgcccaggacccgtcagaagacgctgtcc
tggaaggtgaacattcaagactggggtcccctgcgagcgctgacttttcacacctggctt
gttccagccagtgacccacctcctagcgactttgacccctgccagggcgaggaggagctt
ttccaagcacttagggactcacttctgcacagctcagggaaagggaaaagtggagacacc
tggcagatgccacctggtcgccaaggtttacacctcgtgactgccccatatgatgtgaag
acaagggcacgttgcttccggcgttcttccctcaaacccagtctaattgtgacgaaaagc
acctga

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_3|136_aa
MATTLEMKKEKNDEEKKMHQSSRASPAQSLLQTALFVLAGLCLYWSGQIFGYILTLFSKT
QEPPPPFHLAIIPFPDLHPSIQALGLAPGLQAASPLKLHAAKSEPEPTYSPFHATNFWRP
GAFESPTENTFLTQFF

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_3|411_bp
atggcaacgactttggaaatgaagaaagaaaagaatgatgaagaaaaaaagatgcatcaa
tccagtcgggccagccctgctcagagcctgctgcaaacagccctgtttgtgttggctggt
ctgtgcctctattggtcaggacaaatctttggttatattctcaccctcttctccaagacc
caggagccacctccccctttccacctggctatcatcccattcccggatctgcaccccagc
atccaagcactggggctggcccctggcctccaagcagcttcacccctgaagctgcacgcg
gccaagtccgagcccgagcctacttattctccatttcatgcaacaaatttctggagacct
ggagcctttgaatcacccacagaaaacacctttctgactcaattcttctga

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_4|581_aa
MQRPGPRLWLVLQVMGSCAAISSMDMERPGDGKCQPIEIPMCKDIGYNMTRMPNLMGHEN
QREAAIQLHEFAPLVEYGCHGHLRFFLCSLYAPMCTEQVSTPIPACRVMCEQARLKCSPI
MEQFNFKWPDSLDCRKLPNKNDPNYLCMEAPNNGSDEPTRGSGLFPPLFRPQRPHSAQEH
PLKDGGPGRGGCDNPGKFHHVEKSASCAPLCTPGVDVYWSREDKRFAVVWLAIWAVLCFF
SSAFTVLTFLIDPARFRYPERPIIFLSMCYCVYSVGYLIRLFAGAESIACDRDSGQLYVI
QEGLESTGCTLVFLVLYYFGMASSLWWVVLTLTWFLAAGKKWGHEAIEANSSYFHLAAWA
IPAVKTILILVMRRVAGDELTGVCYVGSMDVNALTGFVLIPLACYLVIGTSFILSGFVAL
FHIRRVMKTGGENTDKLEKLMVRIGLFSVLYTVPATCVIACYFYERLNMDYWKILAAQHK
CKMNNQTKTLDCLMAASIPAVEIFMVKIFMLLVVGITSGMWIWTSKTLQSWQQVCSRRLK
KKSRRKPASVITSGGIYKKAQHPQKTHHGKYEIPAQSPTCV

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_4|1746_bp
atgcagcgcccgggcccccgcctgtggctggtcctgcaggtgatgggctcgtgcgccgcc
atcagctccatggacatggagcgcccgggcgacggcaaatgccagcccatcgagatcccg
atgtgcaaggacatcggctacaacatgactcgtatgcccaacctgatgggccacgagaac
cagcgcgaggcagccatccagttgcacgagttcgcgccgctggtggagtacggctgccac
ggccacctccgcttcttcctgtgctcgctgtacgcgccgatgtgcaccgagcaggtctct
acccccatccccgcctgccgggtcatgtgcgagcaggcccggctcaagtgctccccgatt
atggagcagttcaacttcaagtggcccgactccctggactgccggaaactccccaacaag
aacgaccccaactacctgtgcatggaggcgcccaacaacggctcggacgagcccacccgg
ggctcgggcctgttcccgccgctgttccggccgcagcggccccacagcgcgcaggagcac
ccgctgaaggacgggggccccgggcgcggcggctgcgacaacccgggcaagttccaccac
gtggagaagagcgcgtcgtgcgcgccgctctgcacgcccggcgtggacgtgtactggagc
cgcgaggacaagcgcttcgcagtggtctggctggccatctgggcggtgctgtgcttcttc
tccagcgccttcaccgtgctcaccttcctcatcgacccggcccgcttccgctaccccgag
cgccccatcatcttcctctccatgtgctactgcgtctactccgtgggctacctcatccgc
ctcttcgccggcgccgagagcatcgcctgcgaccgggacagcggccagctctatgtcatc
caggagggactggagagcaccggctgcacgctggtcttcctggtcctctactacttcggc
atggccagctcgctgtggtgggtggtcctcacgctcacctggttcctggccgccggcaag
aagtggggccacgaggccatcgaagccaacagcagctacttccacctggcagcctgggcc
atcccggcggtgaagaccatcctgatcctggtcatgcgcagggtggcgggggacgagctc
accggggtctgctacgtgggcagcatggacgtcaacgcgctcaccggcttcgtgctcatt
cccctggcctgctacctggtcatcggcacgtccttcatcctctcgggcttcgtggccctg
ttccacatccggagggtgatgaagacgggcggcgagaacacggacaagctggagaagctc
atggtgcgtatcgggctcttctctgtgctgtacaccgtgccggccacctgtgtgatcgcc
tgctacttttacgaacgcctcaacatggattactggaagatcctggcggcgcagcacaag
tgcaaaatgaacaaccagactaaaacgctggactgcctgatggccgcctccatccccgcc
gtggagatcttcatggtgaagatctttatgctgctggtggtggggatcaccagcgggatg
tggatttggacctccaagactctgcagtcctggcagcaggtgtgcagccgtaggttaaag
aagaagagccggagaaaaccggccagcgtgatcaccagcggtgggatttacaaaaaagcc
cagcatccccagaaaactcaccacgggaaatatgagatccctgcccagtcgcccacctgc
gtgtga

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_5|159_aa
MASGLRRVCLSAGLLPGALTHAVEFTHSQGLCSPGAPSMDSWELSGPLSRRGRKRAHTPV
TSKSCFPIYVVIVSLTPSMQYSFQLARHRITVDKEFRPEAPRPVLGKPQMQKGLEGERRV
RFQERPGTRADARGITAQLDAEHEMQELLGCRGSASGLL

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_5|480_bp
atggcctctggtctccgacgggtctgcttgtctgcaggtcttctgcccggagccctgaca
cacgcagtggagttcacacattcacagggtctgtgctcccctggtgcaccatccatggat
tcctgggagcttagtggacccctcagcaggcgaggcaggaaaagggctcacactcctgtc
acctccaaatcatgtttccccatctacgtcgttatcgtcagcttaactccttcaatgcaa
tattcatttcagttagcaagacacagaataactgtggacaaggagttcagacctgaggca
cctaggcctgtgctgggtaaacctcagatgcagaaaggcctggaaggagaaaggcgtgtt
cgttttcaggagagacctggaactcgagcagatgccaggggaatcacagcacagcttgac
gcagagcatgagatgcaggagctgctgggatgccgtgggagcgcctcgggcttgctttga

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_6|199_aa
MKVLGWSGVGWGVVLQLLSAPVLSSGNPCLEPMRWLVTSTTHKDQILQEPGLRTRAIACV
THTRMFSWIPYESVHMLVVYHWGALVGFFLFFYCTPSTQLMAVFMNKWIWMKLEAIILSK
LSQGQKTKHRMFSLINKEIRSYRVAELIGGQPTCRRCLRSNIVFGSVDQDLDACGVIISL
FPALRVYLKALKWCQHATE

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_6|600_bp
atgaaggtcttggggtggtcgggggtggggtggggggtggtgctccagcttctgtcggct
cctgtcctgagttcaggaaacccctgtcttgagccaatgcgatggctggtcacctctacc
acccacaaagatcagatcctacaggagcctgggctccgcacccgggccattgcctgtgtg
acgcataccagaatgttctcctggattccttatgaaagtgttcacatgctcgttgtctat
cactggggagctctagtggggtttttcctgttcttttattgcacccctagcacgcagctc
atggctgtgttcatgaacaagtggatatggatgaagctggaagccatcattctcagcaaa
ctatcacaaggacagaaaaccaaacaccgcatgttctcactcataaacaaggaaatccgc
tcctaccgggttgccgagcttattggaggtcagccgacctgccgccgttgcctgcgatct
aacatagtcttcggttctgtggatcaggacctggatgcctgcggggtcattatttcatta
ttccccgcactacgtgtgtatcttaaagctctcaagtggtgccagcatgcaacagaatag

>gi568815586f:130062943_130264685|GENSCAN_predicted_peptide_7|502_aa
MERREADALKKVVGDQGTGNLEGHCQLKILYSGGPGKPLEGLSRGVKEIVEYVGLEFREV
VQPGEENLGLEFREVVQPGEGNLDGLGSSSHIGGNPGLDNWTCPYKQNCLKEKYSLPERR
TLYPPIRKQEFCEPVVNTELLKIKLHKCTFKAIVLEIKVEENSASMHSVMTCAPEAHCVE
ETLAGGCRHLFPSPSGVAVFFPPPPPPSFSLVPPPPLPSAIIITIITITTTIIITIITIT
IIITTITIITIITTITIITIIITITIITSSPPSPSSSHHYHHHRHHHHHHHHHHHHHHHH
ITITIIITTVTITTITIITTIITSPSPSSSPSSPSSPSCSPSSPSSSPSSLPSSLLVSLP
LRNPQLRQLPRAEAMMPAWRLHVCPYLQLGLHHTCISIAVTSIVIYIQGLLGPPLPLDQR
TLEHPEPRPALSCPPPPPIGGSISSHGFNDHLSGNDSQVDIISLNLSLNPRLASPHGSLT
APGGGPMGMQREGFDWRNKDRK

>gi568815586f:130062943_130264685|GENSCAN_predicted_CDS_7|1509_bp
atggagagaagggaagcagacgccctcaagaaggtagtgggagatcagggcactgggaac
cttgaaggccattgtcaactgaaaatcctctactctggtggccctgggaagcctttggaa
ggtttgagcagaggtgttaaagaaatagttgaatacgtgggtctggagttcagggaagtg
gtccagcctggagaagaaaatttgggtctggagttcagggaagtggtccagcctggagaa
ggaaatttggatggattggggagtagctcgcatattggtggtaatccaggtcttgacaat
tggacatgtccatataaacagaactgccttaaagaaaaatacagcctcccagagcgcaga
actctttatccccccattcgcaaacaggaattttgtgagccagttgtaaacacagaatta
ttaaaaattaaattacataaatgtacatttaaagcaattgtattggaaataaaggtagaa
gagaactcagcttcaatgcactccgtgatgacctgtgctcctgaggctcactgcgtggag
gaaacgctcgccgggggctgcaggcatctcttcccatctccgtctggtgtggcagttttc
tttccccctcctcctcctccttctttttctcttgttcctccccctccacttccttctgcc
attatcattaccatcatcaccatcactaccaccatcattattaccatcatcaccatcacc
atcatcatcaccaccatcaccatcatcaccatcatcaccaccatcaccatcatcactatc
atcatcaccatcaccatcatcacatcatcaccaccatcaccatcatcatcacatcactat
catcaccaccgtcaccatcaccaccatcaccaccatcaccatcatcaccatcatcatcac
atcaccatcaccatcatcatcaccaccgtcaccatcaccaccatcaccatcatcaccacc
atcatcacatcaccatcaccatcatcatcaccatcttcaccatcatcaccatcatgctca
ccatcatcaccatcatcatcaccatcatcactaccatcatcactactagtttctttaccc
ctaaggaacccgcagctgcggcagctaccaagagcagaagcaatgatgccggcctggagg
ctgcatgtgtgtccatatctacaactcggtctacaccacacctgcatttccatcgctgtc
acttctatcgtcatctatatccagggcctactgggccctcctcttcccctggaccagagg
accctggagcacccagagcccaggccagccctctcatgtccacctccacccccaatcggg
gggtccatctcttctcacggctttaatgaccacctctctggcaacgactcccaagtggat
atcatcagcctgaacctcagcctaaaccccagacttgccagtccccatggctccctgaca
gctcctggcggaggtccaatgggcatgcagagggagggctttgactggaggaataaggac
aggaagtag