GENSCAN 1.0	Date run:  6-Nov-116	Time: 14:41:15

Sequence gi568815586r:122629302_122830339 : 201038 bp : 45.54% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   6296   6198   99  0  0  118   98    55 0.424   9.58
 1.01 Init -  27151  27016  136  1  1   54   46    56 0.060  -1.70
 1.00 Prom -  29492  29453   40                              -1.56

 2.02 PlyA -  29552  29547    6                               1.05
 2.01 Sngl -  46682  46344  339  2  0   83   43   259 0.992  16.94
 2.00 Prom -  46782  46743   40                              -3.56

 3.03 PlyA -  46818  46813    6                               1.05
 3.02 Term -  47882  47773  110  0  2    5   55    98 0.156  -3.13
 3.01 Init -  73982  72935 1048  2  1   57  105  1343 0.927 127.19
 3.00 Prom -  74088  74049   40                              -6.36

 4.03 PlyA -  74815  74810    6                               1.05
 4.02 Term -  76263  76184   80  1  2   26   34   121 0.119  -1.57
 4.01 Init -  87436  86389 1048  1  1   57  105  1279 0.835 120.79
 4.00 Prom -  89145  89106   40                              -6.86

 5.02 PlyA -  89534  89529    6                               1.05
 5.01 Sngl - 101038  99998 1041  1  0   83   47   809 0.994  73.44
 5.00 Prom - 118577 118538   40                              -6.16

 6.00 Prom + 118754 118793   40                              -0.16
 6.01 Init + 123250 123291   42  0  0   68   85     7 0.477  -1.17
 6.02 Intr + 124392 124516  125  2  2   92   -4   129 0.014   3.48
 6.03 Intr + 132886 132905   20  1  2   77  107    19 0.024  -1.05
 6.04 Intr + 136003 136086   84  2  0   58   94    73 0.919   4.69
 6.05 Intr + 139541 139620   80  0  2   30  105    52 0.382   0.37
 6.06 Term + 139733 139777   45  1  0   73   38   109 0.935   1.61
 6.07 PlyA + 140116 140121    6                               1.05

 7.00 Prom + 142514 142553   40                              -1.96
 7.01 Init + 145370 145405   36  1  0   35  115    50 0.443   0.47
 7.02 Intr + 148190 148382  193  1  1   60   77   213 0.717  16.47
 7.03 Intr + 151863 151909   47  1  2   47   93    -7 0.215  -6.17
 7.04 Intr + 156418 156519  102  0  0   75   84    43 0.719   2.97
 7.05 Intr + 159457 159628  172  0  1   75  116   147 0.951  15.72
 7.06 Intr + 162719 162820  102  0  0   17   58   118 0.036   1.85
 7.07 Intr + 168006 168094   89  1  2   39   91    18 0.008  -3.11
 7.08 Intr + 168784 168899  116  0  2   38   89    76 0.013   1.95
 7.09 Intr + 171823 172551  729  1  0   47  113   282 0.019  17.15
 7.10 Intr + 176850 176994  145  0  1   50   83    34 0.250  -0.62
 7.11 Intr + 183993 184118  126  2  0   70   22   168 0.546   9.28
 7.12 Term + 191834 191878   45  1  0  114   36    44 0.443  -0.99
 7.13 PlyA + 198060 198065    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 124392 124520  129  2  0   92   42   118 0.949   5.78
S.002 Term + 162719 162849  131  0  2   17   37   159 0.895   2.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_1|79_aa
MVSVYDRMYYYLVMKWNKALTQAVPWRNFENMMSSEKSQVQKAPHECSNHILQGKSLDQE
SNLILHFPDFLLSRLHQEX

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_1|237_bp
atggtgtctgtgtacgacagaatgtattattatttggtcatgaaatggaataaagcactg
acacaagctgtcccatggaggaactttgaaaacatgatgtcaagtgaaaaaagccaggtg
caaaaggccccgcatgagtgttccaaccacatcctccagggaaaatccctcgaccaagag
tccaatctgattttgcacttccctgacttcttgctaagccgtctacaccaggaggnn

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_2|112_aa
MHLKSCNTTKVCCFTPEPARPRTHQKEETPKTSEHQKEQTPHTLPLRTVTLTARVRGFIL
EVSKTKNPPIPDTLCPKPMAAEAVPPTSTWGFTHVGKHQQPDLTDRVTDQED

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_2|339_bp
atgcaccttaagagctgtaacaccacgaaggtctgctgcttcactcctgagccagcgaga
ccacgaacccaccagaaggaagaaactccaaagacatccgaacatcagaaggaacaaact
ccgcacacgctgcctttaagaactgtaacactcaccgcgagggtccgcggcttcattctt
gaagtcagtaagaccaagaacccaccaattccggacacactatgtcccaagcccatggca
gcagaggctgttccacctacttctacctggggatttacccatgtaggaaagcatcaacaa
ccggatttgactgaccgagtgactgaccaagaggattaa

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_3|385_aa
MNRHHLQDHFLEIDKKNCCVFRDDFIVKVLPPVLGLEFIFGLLGNGLALWIFCFHLKSWK
SSRIFLFNLAVADFLLIICLPFLMDNYVRRWDWKFGDIPCRLMLFMLAMNRQGSIIFLTV
VAVDRYFRVVHPHHALNKISNRTAAIISCLLWGITIGLTVHLLKKKMPIQNGGANLCSSF
SICHTFQWHEAMFLLEFFLPLGIILFCSARIIWSLRQRQMDRHAKIKRAITFIMVVAIVF
VICFLPSVVVRIRIFWLLHTSGTQNCEVYRSVDLAFFITLSFTYMNSMLDPVVYYFSSPS
FPNFFSTLINRCLQRKMTGEPDNNRSTSVELTGDPNKTRGAPEALMANSGEFYQLLLRGD
SVLAVLTALARSRRLLCLGSLFGRT

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_3|1158_bp
atgaatcggcaccatctgcaggatcactttctggaaatagacaagaagaactgctgtgtg
ttccgagatgacttcattgtcaaggtgttgccgccggtgttggggctggagtttatcttc
gggcttctgggcaatggccttgccctgtggattttctgtttccacctcaagtcctggaaa
tccagccggattttcctgttcaacctggcagtggctgactttctactgatcatctgcctg
cccttcctgatggacaactatgtgaggcgttgggactggaagtttggggacatcccttgc
cggctgatgctcttcatgttggctatgaaccgccagggcagcatcatcttcctcacggtg
gtggcggtagacaggtatttccgggtggtccatccccaccacgccctgaacaagatctcc
aatcggacagcagccatcatctcttgccttctgtggggcatcactattggcctgacagtc
cacctcctgaagaagaagatgccgatccagaatggcggtgcaaatttgtgcagcagcttc
agcatctgccataccttccagtggcacgaagccatgttcctcctggagttcttcctgccc
ctgggcatcatcctgttctgctcagccagaattatctggagcctgcggcagagacaaatg
gaccggcatgccaagatcaagagagccatcaccttcatcatggtggtggccatcgtcttt
gtcatctgcttccttcccagcgtggttgtgcggatccgcatcttctggctcctgcacact
tcgggcacgcagaattgtgaagtgtaccgctcggtggacctggcgttctttatcactctc
agcttcacctacatgaacagcatgctggaccccgtggtgtactacttctccagcccatcc
tttcccaacttcttctccactttgatcaaccgctgcctccagaggaagatgacaggtgag
ccagataataaccgcagcacgagcgtcgagctcacaggggaccccaacaaaaccagaggc
gctccagaggcgttaatggccaactccggggaattctaccagcttctactgagaggtgac
agcgtgctggcagtcctcacagcccttgctcgctctcggcgcctcctctgcctgggctcc
ctctttggccgcacttga

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_4|375_aa
MNRHHLQDHFLEIDKKNCCVFRDDFIAKVLPPVLGLEFIFGLLGNGLALWIFCFHLKSWK
SSRIFLFNLAVADFLLIICLPFVMDYYVRRSDWKFGDIPCRLVLFMFAMNRQGSIIFLTV
VAVDRYFRVVHPHHALNKISNWTAAIISCLLWGITVGLTVHLLKKKLLIQNGTANVCISF
SICHTFRWHEAMFLLEFFLPLGIILFCSARIIWSLRQRQMDRHAKIKRAITFIMVVAIVF
VICFLPSVVVRIHIFWLLHTSGTQNCEVYRSVDLAFFITLSFTYMNSMLDPVVYYFSSPS
FPNFFSTLINRCLQRKITGEPDNNRSTSVELTGDPNKTRGAPEALIANSGATIIFFIIVF
ISPGSSSSTCSSMGI

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_4|1128_bp
atgaatcggcaccatctgcaggatcactttctggaaatagacaagaagaactgctgtgtg
ttccgagatgacttcattgccaaggtgttgccgccggtgttggggctggagtttatcttt
gggcttctgggcaatggccttgccctgtggattttctgtttccacctcaagtcctggaaa
tccagccggattttcctgttcaacctggcagtagctgactttctactgatcatctgcctg
ccgttcgtgatggactactatgtgcggcgttcagactggaagtttggggacatcccttgc
cggctggtgctcttcatgtttgccatgaaccgccagggcagcatcatattcctcacggtg
gtggcggtagacaggtatttccgggtggtccatccccaccacgccctgaacaagatctcc
aattggacagcagccatcatctcttgccttctgtggggcatcactgttggcctaacagtc
cacctcctgaagaagaagttgctgatccagaatggcactgcaaatgtgtgcatcagcttc
agcatctgccataccttccggtggcacgaagctatgttcctcctggagttcttcctgccc
ctgggcatcatcctgttctgctcagccagaattatctggagcctgcggcagagacaaatg
gaccggcatgccaagatcaagagagccatcaccttcatcatggtggtggccatcgtcttt
gtcatctgcttccttcccagcgtggttgtgcggatccacatcttctggctcctgcacact
tcgggcacgcagaattgtgaagtgtaccgctcggtggacctggcgttctttatcactctc
agcttcacctacatgaacagcatgctggaccccgtggtgtactacttctccagcccatcc
tttcccaacttcttctccactttgatcaaccgctgcctccagaggaagataacaggtgag
ccagataataaccgcagcacgagcgtcgagctcacaggggaccccaacaaaaccagaggc
gctccagaggcgttaatcgccaactccggtgccaccatcatcttcttcatcatcgtcttc
atctcacctggatcatcatcaagtacttgtagttctatgggaatctaa

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_5|346_aa
MYNGSCCRIEGDTISQVMPPLLIVAFVLGALGNGVALCGFCFHMKTWKPSTVYLFNLAVA
DFLLMICLPFRTDYYLRRRHWAFGDIPCRVGLFTLAMNRAGSIVFLTVVAADRYFKVVHP
HHAVNTISTRVAAGIVCTLWALVILGTVYLLLENHLCVQETAVSCESFIMESANGWHDIM
FQLEFFMPLGIILFCSFKIVWSLRRRQQLARQARMKKATRFIMVVAIVFITCYLPSVSAR
LYFLWTVPSSACDPSVHGALHITLSFTYMNSMLDPLVYYFSSPSFPKFYNKLKICSLKPK
QPGHSKTQRPEEMPISNLGRRSCISVANSFQSQSDGQWDPHIVEWH

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_5|1041_bp
atgtacaacgggtcgtgctgccgcatcgagggggacaccatctcccaggtgatgccgccg
ctgctcattgtggcctttgtgctgggcgcactaggcaatggggtcgccctgtgtggtttc
tgcttccacatgaagacctggaagcccagcactgtttaccttttcaatttggccgtggct
gatttcctccttatgatctgcctgccttttcggacagactattacctcagacgtagacac
tgggcttttggggacattccctgccgagtggggctcttcacgttggccatgaacagggcc
gggagcatcgtgttccttacggtggtggctgcggacaggtatttcaaagtggtccacccc
caccacgcggtgaacactatctccacccgggtggcggctggcatcgtctgcaccctgtgg
gccctggtcatcctgggaacagtgtatcttttgctggagaaccatctctgcgtgcaagag
acggccgtctcctgtgagagcttcatcatggagtcggccaatggctggcatgacatcatg
ttccagctggagttctttatgcccctcggcatcatcttattttgctccttcaagattgtt
tggagcctgaggcggaggcagcagctggccagacaggctcggatgaagaaggcgacccgg
ttcatcatggtggtggcaattgtgttcatcacatgctacctgcccagcgtgtctgctaga
ctctatttcctctggacggtgccctcgagtgcctgcgatccctctgtccatggggccctg
cacataaccctcagcttcacctacatgaacagcatgctggatcccctggtgtattatttt
tcaagcccctcctttcccaaattctacaacaagctcaaaatctgcagtctgaaacccaag
cagccaggacactcaaaaacacaaaggccggaagagatgccaatttcgaacctcggtcgc
aggagttgcatcagtgtggcaaatagtttccaaagccagtctgatgggcaatgggatccc
cacattgttgagtggcactga

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_6|131_aa
MILGLINRESFVTQVCEMAADISESSGADCKGDPRNSAKLDADYPLRVLYCGGKCCLFIT
NRENSPKQEAGISEGQGTAGEEEEKKKQKRVTGEDEIIIQGDFTDDIIDVIQEKWPEVDD
DSIEDLGEVKK

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_6|396_bp
atgatcctcggactcattaatagggagtcatttgtgactcaggtttgtgaaatggctgct
gacatttctgaatccagcggggctgactgcaaaggagacccaaggaacagtgccaagtta
gatgccgattacccacttcgagtcctttattgtggaggcaagtgttgtctgttcattacc
aacagagaaaattcacccaaacaagaagctggaattagtgagggtcaaggaacagcaggg
gaagaagaggagaagaaaaaacagaagagagtaacaggggaggatgaaattatcattcag
ggagattttacagatgacataattgatgtcattcaggaaaaatggccagaggtagatgat
gacagcatcgaagatcttggagaagtaaagaagtga

>gi568815586r:122629302_122830339|GENSCAN_predicted_peptide_7|633_aa
MNPPAAFLAGRQNIGSEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEE
DRQKVLTLEERCSKLEGELHKRTEIIRSLTKKARNETLSNTLVELSAQVGQLQAREQALT
TMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVN
KLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNS
ELHNLRQIYVKQQSDLQFLNFNVENSQELIQMYDSKMEESKALDSSRDMCLSDLENNHPK
VDIKREKNQKSLFKDQKFEAMLVQQNRSDKSSCDECKEKKQQIDTVFGEKSVITLSSIFT
KDLVEKHNLPWSLGGKTQIEPENKITLCKIHTKSPKCHGTGVQNEGKQPSETPTLSDEKQ
WHDVSVYLGLTNCPSSKHPEKLDVECQDQMERSEISCCQKNEACLGESGMCDSKCCHPSN
FIIEAPGHMSDVEWMSIFKPSKMQRIVRLKSGCTCSESICGTQHDSPASELIAIQDSHSL
GSSKSALREDETESSSNKKNSPTSLLIYKDAPAFNEKDDFSPTSKLQRLLAESRQMVTDL
ELSTLLPISHENLTGSATNTPKKANEALRVADA

>gi568815586r:122629302_122830339|GENSCAN_predicted_CDS_7|1902_bp
atgaaccctccggcagccttccttgccgggcgccagaacatcgggtcagaagttgagatt
tccactatcgagaaacaacggaaggagctgcagttgctcattggagaattaaaagatcga
gataaagagctcaatgacatggttgcagtgcaccagcaacagcttctttcatgggaagag
gatcggcagaaagtgttgacactggaagaacgttgcagcaaattagaaggtgaactacat
aaaagaactgaaataatcaggtcactcacgaagaaggctagaaacgaaactctcagcaac
acgttagtggaactttctgcccaggtaggacagctacaagctcgagaacaagctcttacg
acaatgataaagctaaaggacaaagatattattgaggcagttaatcacattgcagattgt
tcgggtaaatttaaaatgctagagcatgccctacgtgatgccaagatggcggagacttgt
attgtgaaagaaaagcaagattataagcagaaattgaaggcacttaagattgaagtcaac
aaactaaaagaggacctcaatgaaaagacgacagaaaataatgagcaacgagaagagatc
attcgcctcaagcaagagaaaagttgcctgcacgatgaattgctttttactgtagagaga
gaaaagaggaaagatgaattgcttaatattgcgaagtcaaagcaagaacgcacaaattca
gaactgcacaatctgagacagatttatgtaaaacaacagagtgatctgcagtttcttaat
ttcaatgtggaaaattctcaggaattaatacagatgtatgactcaaagatggaggaatca
aaggctctggactccagcagagacatgtgtttatcagaccttgaaaataaccacccaaaa
gtcgatattaagagggaaaaaaatcagaagtcactgtttaaggaccagaaatttgaagcc
atgttggttcagcaaaataggtcagacaagagctcttgcgatgaatgcaaagagaagaaa
caacagatcgatactgtgtttggggagaaaagtgtaattacgctgtcatccatattcacc
aaagacttagtagagaaacacaacctcccttggtctctgggaggaaaaacccagattgaa
cccgaaaacaaaattacattgtgcaagatccacacaaaatcaccaaaatgtcatggcact
ggggttcagaacgaaggaaaacaaccctcagaaacacccactttatctgatgagaagcag
tggcatgatgtcagtgtttacctgggcctgaccaactgtccaagttcaaaacatccagaa
aagctggatgtagaatgtcaagatcagatggaaaggtccgaaatctcatgctgccagaaa
aatgaagcctgtctgggcgaaagtggcatgtgtgactccaagtgctgccacccgagtaac
ttcataattgaagccccaggccacatgtctgacgtggagtggatgagtattttcaagcct
tccaaaatgcagagaattgtccgcctcaaatctgggtgcacctgttcagaaagcatctgt
ggcacacaacatgactccccggcaagtgagctaattgccatccaagattcccactctttg
ggttcttcaaaatctgccttgagagaagatgagacggagtcctcttccaataaaaagaac
tcacctacgagtttgttaatctacaaagatgcaccagcattcaatgaaaaggatgatttc
tcgcccacgagcaagctccagcgtttgctggcggaatctcgtcagatggtgacggacctg
gagctgagcacactgctgcccatcagccatgagaatctcactggcagtgccacaaataca
cctaagaaggctaacgaggcacttagagttgccgatgcttaa