GENSCAN 1.0	Date run:  8-Nov-116	Time: 05:21:15

Sequence gi568815586r:120920564_121138971 : 218408 bp : 47.22% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   2368   2363    6                               1.05
 1.05 Term -  10952  10848  105  2  0   77   43    52 0.067  -1.99
 1.04 Intr -  21379  21193  187  0  1   70   37   153 0.030   8.09
 1.03 Intr -  35001  34877  125  0  2   -2   63   122 0.029   0.08
 1.02 Intr -  48486  48385  102  0  0  103   45    43 0.415   1.87
 1.01 Init -  49098  49096    3  0  0  113   81     0 0.471   1.80
 1.00 Prom -  55754  55715   40                              -7.16

 2.00 Prom +  57412  57451   40                              -3.26
 2.01 Init +  58206  58531  326  2  2   83   64   486 0.830  40.50
 2.02 Intr +  59107  59194   88  1  1   69   55    69 0.612   1.67
 2.03 Intr +  66457  66515   59  0  2  132   48     9 0.282  -1.02
 2.04 Intr +  68270  68469  200  2  2   87   94   346 0.410  34.09
 2.05 Intr +  72957  73143  187  1  1  100   55   166 0.861  13.25
 2.06 Intr +  73601  73842  242  2  2   59  127   248 0.888  22.99
 2.07 Intr +  75699  75850  152  1  2   79  105   137 0.999  14.38
 2.08 Intr +  75978  76179  202  2  1   97  111   187 0.857  20.76
 2.09 Intr +  76911  77102  192  1  0  110  101   245 0.991  27.46
 2.10 Intr +  78705  78826  122  1  2   65  110   269 0.999  27.01
 2.11 Intr +  78920  79064  145  1  1   95   94   126 0.902  13.76
 2.12 Term +  80502  80629  128  1  2   63   41   162 0.992   7.44
 2.13 PlyA +  82143  82148    6                              -0.45

 3.07 PlyA -  82318  82313    6                              -0.45
 3.06 Term -  83929  83590  340  0  1   90   46   443 0.970  34.31
 3.05 Intr -  84530  84440   91  0  1   60   94    52 0.991   2.05
 3.04 Intr -  85831  85758   74  0  2   89  101    72 0.998   7.65
 3.03 Intr -  90363  90265   99  2  0   58   97   190 0.997  16.13
 3.02 Intr -  90583  90541   43  2  1  119   79   -16 0.434  -2.10
 3.01 Init -  95911  95767  145  1  1   89   70   108 0.986   9.38
 3.00 Prom -  99494  99455   40                              -7.76

 4.07 PlyA -  99750  99745    6                               1.05
 4.06 Term - 100495  99998  498  1  0  133   29   657 0.987  58.82
 4.05 Intr - 103574 103427  148  1  1  106   90   197 0.596  21.94
 4.04 Intr - 107254 107013  242  1  2   90   69   268 0.996  21.45
 4.03 Intr - 111054 110879  176  1  2  105   94   216 0.999  23.56
 4.02 Intr - 113180 112898  283  2  1  106   82   278 0.999  25.99
 4.01 Init - 118408 118211  198  1  0   78  116   199 0.932  20.19
 4.00 Prom - 126389 126350   40                              -5.46

 5.06 PlyA - 127253 127248    6                               1.05
 5.05 Term - 128006 127822  185  0  2   54   43   105 0.357   0.31
 5.04 Intr - 128296 128262   35  0  2   87   36    47 0.110  -2.73
 5.03 Intr - 133258 133179   80  1  2   98   52    55 0.502   1.25
 5.02 Intr - 133482 133291  192  0  0   98   49   114 0.078   8.19
 5.01 Init - 147068 146961  108  2  0   92   31   127 0.283   7.62
 5.00 Prom - 152565 152526   40                              -2.86

 6.03 PlyA - 160836 160831    6                               1.05
 6.02 Term - 165952 165680  273  1  0   58   47   154 0.471   3.77
 6.01 Init - 168606 168481  126  0  0   32   65   106 0.244   2.58
 6.00 Prom - 172827 172788   40                              -3.76

 7.00 Prom + 173822 173861   40                              -3.66
 7.01 Init + 175184 175401  218  1  2   61   94    60 0.065   2.06
 7.02 Intr + 178111 178205   95  1  2   58   74    37 0.023  -1.09
 7.03 Term + 186757 186905  149  2  2   34   50   241 0.965  12.96
 7.04 PlyA + 188062 188067    6                               1.05

 8.06 PlyA - 191278 191273    6                               1.05
 8.05 Term - 196428 196333   96  0  0   54   54    80 0.555  -0.83
 8.04 Intr - 201075 200861  215  1  2   51   79    94 0.667   3.23
 8.03 Intr - 205056 204955  102  1  0   24  116    70 0.458   3.55
 8.02 Intr - 206083 205980  104  0  2   93   70    29 0.610   1.42
 8.01 Init - 207682 207525  158  1  2   87   79     8 0.547  -1.36
 8.00 Prom - 207744 207705   40                              -3.16

 9.00 Prom + 211854 211893   40                              -7.36
 9.01 Init + 212408 212532  125  1  2  108  111   148 0.986  18.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 139934 140008   75  1  0  117   55    57 0.821   3.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_1|173_aa
MNIPLTFSPLCLCASCSLYLETSICQAAAVFKIYLSTASASVKADSPHGHKVAATTHSGT
FVSSGEKEELLTLISPEMRAKEFKMVEPYYAKEPNPSVHWKKTAQDFYLPGNICPESTSW
KKTAQDFYLPGNICIRLCGWQQLFLAKSLALVAAIQLPLVSANFLILFLLPIL

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_1|522_bp
atgaacatacccctaactttctcacctctgtgcctttgtgcaagctgctccctctacctg
gaaacctccatttgtcaagctgctgctgtcttcaagatctacctgtctacagcatcagct
tctgtgaaggctgattcccctcatggtcacaaagtggctgccaccactcactcaggcacc
tttgtctcctctggggagaaggaggagctgctcaccctcatcagcccagagatgagggca
aaagagtttaagatggtggagccttattatgcaaaggaacccaatcccagcgtccactgg
aagaagactgcccaggacttctaccttcccgggaacatctgcccagagtccaccagctgg
aagaagactgcccaggacttctaccttcctgggaacatctgcatcagactctgtgggtgg
cagcagctgtttctggcaaaatccttagcgctggttgcagccattcagctccccttggtt
tctgccaatttcctgatcctatttctcttgccaattctctaa

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_2|680_aa
MVSKLSQLQTELLAALLESGLSKEALIQALGEPGPYLLAGEGPLDKGESCGGGRGELAEL
PNGLGETRGSEDETDDDGEDFTPPILKELENLSPEEAAHQKAVVETLLQHPTSPAGAIRG
CPFYIPIRWRTPRLLENWGDPQQRHDSQVASGPFESLWEDPWRVAKMVKSYLQQHNIPQR
EVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTG
DELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQA
QGLGSNLVTEVRVYNWFANRRKEEAFRHKLAMDTYSGPPPGPGPGPALPAHSSPGLPPPA
LSPSKVHGVRYGQPATSETAEVPSSSGGPLVTVSTPLHQVSPTGLEPSHSLLSTEAKLVS
AAGGPLPPVSTLTALHSLEQTSPGLNQQPQNLIMASLPGVMTIGPGEPASLGPTFTNTGA
STLVIGLASTQAQSVPVINSMGSSLTTLQPVQFSQPLHPSYQQPLMPPVQSHVTQSPFMA
TMAQLQSPHALYSHKPEVAQYTHTGLLPQTMLITDTTNLSALASLTPTKQVFTSDTEASS
ESGLHTPASQATTLHVPSQDPASIQHLQPAHRLSASPTVSSSSLVLYQSSDSSNGQSHLL
PSNHSVIETFISTQMASSSQ

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_2|2043_bp
atggtttctaaactgagccagctgcagacggagctcctggcggccctgctcgagtcaggg
ctgagcaaagaggcactgatccaggcactgggtgagccggggccctacctcctggctgga
gaaggccccctggacaagggggagtcctgcggcggcggtcgaggggagctggctgagctg
cccaatgggctgggggagactcggggctccgaggacgagacggacgacgatggggaagac
ttcacgccacccatcctcaaagagctggagaacctcagccctgaggaggcggcccaccag
aaagccgtggtggagacccttctgcagcaccccacctcaccagcaggcgccattagaggc
tgcccgttctacatccccatccgctggcggactccccgtctcctggagaactggggagac
ccacagcagagacatgactcacaggtggcatcaggtccctttgagtctctctgggaggac
ccgtggcgtgtggcgaagatggtcaagtcctacctgcagcagcacaacatcccacagcgg
gaggtggtcgataccactggcctcaaccagtcccacctgtcccaacacctcaacaagggc
actcccatgaagacgcagaagcgggccgccctgtacacctggtacgtccgcaagcagcga
gaggtggcgcagcagttcacccatgcagggcagggagggctgattgaagagcccacaggt
gatgagctaccaaccaagaaggggcggaggaaccgtttcaagtggggcccagcatcccag
cagatcctgttccaggcctatgagaggcagaagaaccctagcaaggaggagcgagagacg
ctagtggaggagtgcaatagggcggaatgcatccagagaggggtgtccccatcacaggca
caggggctgggctccaacctcgtcacggaggtgcgtgtctacaactggtttgccaaccgg
cgcaaagaagaagccttccggcacaagctggccatggacacgtacagcgggcccccccca
gggccaggcccgggacctgcgctgcccgctcacagctcccctggcctgcctccacctgcc
ctctcccccagtaaggtccacggtgtgcgctatggacagcctgcgaccagtgagactgca
gaagtaccctcaagcagcggcggtcccttagtgacagtgtctacacccctccaccaagtg
tcccccacgggcctggagcccagccacagcctgctgagtacagaagccaagctggtctca
gcagctgggggccccctcccccctgtcagcaccctgacagcactgcacagcttggagcag
acatccccaggcctcaaccagcagccccagaacctcatcatggcctcacttcctggggtc
atgaccatcgggcctggtgagcctgcctccctgggtcctacgttcaccaacacaggtgcc
tccaccctggtcatcggcctggcctccacgcaggcacagagtgtgccggtcatcaacagc
atgggcagcagcctgaccaccctgcagcccgtccagttctcccagccgctgcacccctcc
taccagcagccgctcatgccacctgtgcagagccatgtgacccagagccccttcatggcc
accatggctcagctgcagagcccccacgccctctacagccacaagcccgaggtggcccag
tacacccacacgggcctgctcccgcagactatgctcatcaccgacaccaccaacctgagc
gccctggccagcctcacgcccaccaagcaggtcttcacctcagacactgaggcctccagt
gagtccgggcttcacacgccggcatctcaggccaccaccctccacgtccccagccaggac
cctgccagcatccagcacctgcagccggcccaccggctcagcgccagccccacagtgtcc
tccagcagcctggtgctgtaccagagctcagactccagcaatggccagagccacctgctg
ccatccaaccacagcgtcatcgagaccttcatctccacccagatggcctcttcctcccag
taa

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_3|263_aa
MAAPSGTVSDSESSNSSSDAEELERCREAAMPAWGLEQRPHVAGKPRAGAANSQLSTSQP
SLRHKVNEHEQDGNELQTTPEFRAHVAKKLGALLDSFITISEAAKEPAKAKVQKVALEDD
GFRLFFTSVPGGREKEESPQPRRKRQPSSSSSEDSDEEWRRCREAAVSASDILQESAIHS
PGTVEKEAKKKRKLKKKAKKVASVDSAVAATTPTSMATVQKQKSGELNGDQVSLGTKKKK
KAKKASETSPFPPAKSATAIPAN

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_3|792_bp
atggcggcgcccagtggcacagtgagcgattcggaaagtagtaacagcagtagcgatgcg
gaggagctggagcggtgccgcgaggcggcaatgccggcttggggcttggagcaacgcccg
cacgtggcagggaagccaagagccggtgctgcaaatagccagttgtcaacctcccaaccg
agcctcaggcataaggtgaatgagcatgaacaagatggcaacgagcttcagaccacccct
gaattccgagcccacgtagccaagaagctgggagccctgctggacagcttcattaccatc
tcagaagcagcaaaggagccagcaaaagctaaggtacagaaagtcgctttggaggatgat
ggtttccgccttttcttcacatctgtccctggaggccgtgagaaggaagagtctccccaa
ccccgccgaaagcgacagccctccagctccagcagtgaggacagtgacgaggagtggcgg
cggtgccgggaggcagctgtgtcggcgtccgacatcctacaggagtcagccatccacagc
cctggaacagtggagaaggaggcaaagaagaaaaggaagttgaaaaagaaagccaagaag
gtggccagtgtcgactcggctgtcgctgccaccacccccaccagcatggccacagtccag
aagcagaagtcaggtgagctcaacggggaccaggtgtcgcttgggaccaaaaagaagaaa
aaggcaaagaaggccagcgagacctctccattcccaccagcaaagagtgctacagctata
cctgcaaactga

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_4|514_aa
MALMQELYSTPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVR
VLKVVKVGSFGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTMWQSQDLLD
LGLEDLRMEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKA
CGGPGNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLT
IYAWEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKER
PIILDPADPTLNVAEGYRWDIVAQRASQCLKQDCCYDNRENPISSWNVKRARDIHLTVEQ
RGYPDFNLIVNPYEPIRKVKEKIRRTRGYSGLQRLSFQVPGSERQLLSSRCSLAKYGIFS
HTHIYLLETIPSEIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQG
QVLQDWLGLGIYGIQDSDTLILSKKKGEALFPAS

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_4|1545_bp
atggcactgatgcaggaactgtatagcacaccagcctccaggctggactccttcgtggct
cagtggctgcagccccaccgggagtggaaggaagaggtgctagacgctgtgcggaccgtg
gaggagtttctgaggcaggagcatttccaggggaagcgtgggctggaccaggatgtgcgg
gtgctgaaggtagtcaaggtgggctccttcgggaatggcacggttctcaggagcaccaga
gaggtggagctggtggcgtttctgagctgtttccacagcttccaggaggcagccaagcat
cacaaagatgttctgaggctgatatggaaaaccatgtggcaaagccaggacctgctggac
ctcgggctcgaggacctgaggatggagcagagagtccccgatgctctcgtcttcaccatc
cagaccagggggactgcggagcccatcacggtcaccattgtgcctgcctacagagccctg
gggccttctcttcccaactcccagccaccccctgaggtctatgtgagcctgatcaaggcc
tgcggtggtcctggaaatttctgcccatccttcagcgagctgcagagaaatttcgtgaaa
catcggccaactaagctgaagagcctcctgcgcctggtgaaacactggtaccagcagtat
gtgaaagccaggtcccccagagccaatctgccccctctctatgctcttgaacttctaacc
atctatgcctgggaaatgggtactgaagaagacgagaatttcatgttggacgaaggcttc
accactgtgatggacctgctcctggagtatgaagtcatctgtatctactggaccaagtac
tacacactccacaatgcaatcattgaggattgtgtcagaaaacagctcaaaaaagagagg
cccatcatcctggatccggccgaccccaccctcaacgtggcagaagggtacagatgggac
atcgttgctcagagggcctcccagtgcctgaaacaggactgttgctatgacaacagggag
aaccccatctccagctggaacgtgaagagggcacgagacatccacttgacagtggagcag
aggggttacccagatttcaacctcatcgtgaacccttatgagcccataaggaaggttaaa
gagaaaatccggaggaccaggggctactctggcctgcagcgtctgtccttccaggttcct
ggcagtgagaggcagcttctcagcagcaggtgctccttagccaaatatgggatcttctcc
cacactcacatctatctgctggagaccatcccctccgagatccaggtcttcgtgaagaat
cctgatggtgggagctacgcctatgccatcaaccccaacagcttcatcctgggtctgaag
cagcagattgaagaccagcaggggcttcctaaaaagcagcagcagctggaattccaaggc
caagtcctgcaggactggttgggtctggggatctatggcatccaagacagtgacactctc
atcctctcgaagaagaaaggagaggctctgtttccagccagttag

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_5|199_aa
MGTQACGSSAEALSNGCTIITQLWDHQSLCKRVPSSSVSTGKGTMLNYSSDLDLILFLSC
FSSVQDQAQLRDSIISFIEENWFTVARAWPTISLWSGTGRVQSRKSSGVIWMDKLPAFDA
LGKDSDRLSVDWTVPTYIKQHKDYREARSRRGGDACSCKKMPGNRHRNSRSQISKTQQHK
GSCLNKFIGESKAAIRTKL

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_5|600_bp
atgggaacccaagcatgtggctccagcgccgaggctctgagcaacggatgcaccatcatc
actcagctgtgggaccaccagtcactgtgcaaaagagttccatcatctagcgtctccaca
gggaaggggacgatgctgaactacagctctgacctggacctgattctcttcctgagctgc
ttctccagcgtccaagaccaggcacagctgcgagacagtatcatcagcttcattgaagag
aattggttcactgtagcaagagcctggcctacaatatcactgtggtccggcacagggagg
gtccagtccaggaagagcagcggagtcatttggatggataagctcccggctttcgatgct
ctgggtaaagacagcgacaggctctcagtggattggacggtgcccacctacattaagcag
cacaaagactacagggaagctagaagcagacgtggcggggatgcctgcagctgcaagaag
atgcctgggaacagacacagaaactctcgctcccagataagcaaaacacagcagcacaaa
ggcagctgtttgaataaattcattggagagtctaaggcagcaatccggaccaagctgtaa

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_6|132_aa
MKTPLGWALARVGKGSLLTLFSLLDLLTERGVFPGSDPSQRVGALFSMHFSKAHGSEIQQ
EQIMEDSNPDYARKVIWAEENLLAIPRSIPSASGQRQEEPQTSPPASSSTEGVLDLKLSG
DWNHCCGLYSRA

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_6|399_bp
atgaaaacacccctgggctgggctctagctcgagtgggcaaaggttccctcctcacactg
ttcagcctgttggaccttctcactgaacgaggcgtcttcccaggatctgacccaagtcag
agggtgggggctctattttcaatgcatttttccaaagctcatggctcagagatacaacaa
gaacagatcatggaagattcaaatccagactatgccagaaaagtgatctgggctgaagaa
aacctcctggccattcccagaagcatcccgtcggcatctgggcaaaggcaggaggagcct
cagacatcaccacctgccagctcctccactgaaggcgtcctggacctgaagctatcagga
gattggaatcattgctgtggtttgtacagcagggcctga

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_7|153_aa
MGSLGEKTCEIKCEAGKTRTCAGGGDLLHRVCTFARTVGASAAVGGEEILDHTSERGGVG
GSGRVCKSVGRDSLLRKANIRQQNPKNGVIKAASGVRGQFHARHENKEHVIKALLRAKFK
FPGCQKIHISQKWVFTKFSEDEFEDTVAEKWLI

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_7|462_bp
atggggtctctgggtgagaaaacgtgtgagataaagtgcgaggctggaaaaacgcgcacg
tgtgcaggaggcggggatctgctgcaccgagtgtgcacatttgcacgaaccgtgggggcg
tctgcggctgtgggtggagaggaaatcctggatcacacatctgagagagggggtgtgggt
gggagtgggagagtatgtaagagcgtgggtcgtgacagccttctacgaaaggcaaatata
agacagcaaaatccaaagaatggagttattaaggctgcaagtggagtccgaggccagttc
catgccaggcatgagaacaaggagcatgtgattaaggccctgctcagggccaagttcaag
tttcctggctgccagaagatccacatctcacagaagtgggtcttcaccaagttcagtgaa
gatgaatttgaagacacggtggctgagaagtggctcatctga

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_8|224_aa
MENGRKGQEWSQGSAQGEGRVTWRGTEDRSLKDTNTKETKLRQSREERKAERQTAPGAES
PKVSKISYTKWDVQVTHMFVLHTFCMKANGYHIEQQRYTVLTQQYRKLNRTVLQQLQVSK
QAKEFCDDQKTDHSIPAEQSQTNIQANIRLLEAACLGAGISLKSSTQWATHAGIFPMVSL
PWHLLVIDRSWNKLNLKSTDLHIHSCGLLDHSLIHQLNESHAVL

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_8|675_bp
atggaaaatgggcggaaggggcaagagtggagccaggggtctgcccagggagagggtaga
gtgacatggagggggaccgaagacagatccctgaaggacaccaacaccaaggagactaag
ctgaggcagagtagggaggagaggaaagccgaaagacagactgccccaggagcagagtct
ccaaaagtgagcaaaatcagctacacaaaatgggacgtgcaagttacccatatgtttgtg
ttgcacacattttgcatgaaagctaatggctaccatattgaacagcaaagatatacggta
cttacccagcagtatagaaagctcaaccggacagtgctacaacagttgcaggtaagcaag
caagccaaagaattctgtgatgatcagaagactgaccacagcatccctgcagaacagagc
cagacaaacatccaggcaaacatccgcctgctggaggcagcctgcctgggtgctgggatc
agtctcaaatctagcacacaatgggccacccacgctggcatctttcctatggtgtccttg
ccctggcatctcctggtcattgataggtcctggaataagctcaatctgaaatcaacagac
cttcatatccacagctgtggcttattggaccattccctgatccaccagctgaacgagagt
catgctgtcctctga

>gi568815586r:120920564_121138971|GENSCAN_predicted_peptide_9|42_aa
MPACCSCSDVFQYETNKVTRIQSMNYGTIKWFFHVIIFSYVX

>gi568815586r:120920564_121138971|GENSCAN_predicted_CDS_9|126_bp
atgccggcctgctgcagctgcagtgatgttttccagtatgagacgaacaaagtcactcgg
atccagagcatgaattatggcaccattaagtggttcttccacgtgatcatcttttcctac
gtttgn