GENSCAN 1.0	Date run:  6-Nov-116	Time: 14:49:59

Sequence gi568815586r:50963749_51176561 : 212813 bp : 43.58% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   4310   4422  113  0  2   46   43   143 0.463   4.32
 1.02 PlyA +   5249   5254    6                               1.05

 2.00 Prom +  12614  12653   40                              -4.76
 2.01 Sngl +  13126  14256 1131  0  0   60   44   336 0.992  22.98
 2.02 PlyA +  14894  14899    6                               1.05

 3.18 PlyA -  15513  15508    6                               1.05
 3.17 Term -  15945  15880   66  0  0  114   39    29 0.032  -1.46
 3.16 Intr -  24687  24634   54  0  0   96  115    19 0.172   4.58
 3.15 Intr -  27200  27047  154  1  1  110  111   109 0.999  15.47
 3.14 Intr -  27924  27851   74  0  2  107   74    63 0.999   5.00
 3.13 Intr -  28621  28442  180  1  0  111   94   150 0.777  17.96
 3.12 Intr -  29181  29062  120  0  0   89   94    -5 0.646   0.89
 3.11 Intr -  30882  30796   87  0  0   58   86   112 0.991   8.17
 3.10 Intr -  32039  31881  159  2  0   88   89   163 0.828  16.58
 3.09 Intr -  33160  33069   92  2  2   45  105    68 0.797   3.91
 3.08 Intr -  35493  35419   75  1  0  129   37    77 0.935   6.19
 3.07 Intr -  35667  35597   71  2  2   84   91    13 0.999   0.03
 3.06 Intr -  36671  36565  107  2  2   69  100   124 0.998  10.71
 3.05 Intr -  41159  41040  120  2  0   48  105    31 0.718   1.49
 3.04 Intr -  41688  41563  126  0  0   99   61    65 0.977   5.78
 3.03 Intr -  44796  44728   69  0  0   86   88   126 0.357  11.78
 3.02 Intr -  53738  53714   25  1  1  112   62    24 0.091   0.23
 3.01 Init -  62278  62178  101  1  2   79   13   190 0.288   8.34
 3.00 Prom -  73860  73821   40                              -2.46

 4.00 Prom +  79957  79996   40                              -3.66
 4.01 Init +  84609  84730  122  2  2   96   85    88 0.969   6.96
 4.02 Intr +  85286  85437  152  2  2   93   93    95 0.944  10.31
 4.03 Intr +  90064  90112   49  2  1   50   82    46 0.665  -2.06
 4.04 Intr +  92087  92273  187  2  1  121   61    10 0.344   1.29
 4.05 Intr +  92602  92754  153  0  0   69  103    56 0.621   5.47
 4.06 Term +  96362  96460   99  1  0   80   48    62 0.635  -0.47
 4.07 PlyA +  98551  98556    6                               1.05

 5.19 PlyA -  99429  99424    6                              -3.24
 5.18 Term - 100921  99998  924  1  0  106   48   768 0.996  66.78
 5.17 Intr - 104221 103925  297  1  0   96   82   420 0.995  39.27
 5.16 Intr - 104926 104801  126  1  0   65   88    37 0.742   2.28
 5.15 Intr - 110334 110075  260  1  2   79   46   300 0.956  22.08
 5.14 Intr - 112831 112663  169  1  1   20   94   233 0.138  16.62
 5.13 Intr - 114236 114128  109  1  1   70   34    49 0.032  -2.01
 5.12 Intr - 120037 119947   91  2  1   64   33   128 0.015   3.95
 5.11 Intr - 132292 132241   52  1  1   97   85    18 0.498   0.88
 5.10 Intr - 135170 135028  143  0  2  117   61    78 0.974   8.07
 5.09 Intr - 136031 135907  125  1  2  115   86    57 0.940   8.43
 5.08 Intr - 142865 142777   89  2  2   84  110    14 0.977   1.97
 5.07 Intr - 143598 143488  111  0  0   59   83    53 0.844   2.48
 5.06 Intr - 145525 145373  153  1  0  105   61    63 0.974   5.57
 5.05 Intr - 147235 147129  107  2  2   95  110    23 0.949   5.13
 5.04 Intr - 152672 152567  106  2  1   84   95    78 0.997   7.89
 5.03 Intr - 153999 153923   77  1  2   98   93    99 0.904  10.63
 5.02 Intr - 155187 155133   55  0  1   34  113    -6 0.195  -4.95
 5.01 Init - 157919 157917    3  2  0  113   81     0 0.323   1.80
 5.00 Prom - 159659 159620   40                              -5.76

 6.03 PlyA - 159806 159801    6                               1.05
 6.02 Term - 161420 160880  541  1  1   40   43   749 0.003  59.33
 6.01 Init - 208674 208553  122  0  2  101  105   155 0.995  17.61

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  24687  24577  111  0  0   96   41    84 0.819   3.06
S.002 Init - 112813 112663  151  1  1   37   94   227 0.860  18.40
S.003 Term - 207534 207489   46  2  1   75   50    43 0.815  -4.12


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_1|37_aa
XLATERGIVSNNKKKKEEEEEEEENEEEEEKGFITEI

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_1|114_bp
nccttggccacagagcgaggcattgtctcaaataataagaagaagaaggaggaggaggag
gaggaggaggagaatgaggaggaggaggagaagggatttattacagagatatga

>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_2|376_aa
MSEIPFTIASKRIKYLGIQLTREVKDLSKENYKPLLNEIKEDTNKWKNIPCSWVGRINIV
KTAILPKVIYRFNAIPIKLPMTFFTELGKTTLKFIWNQKRACIAKSILSQKNKAGSITLP
DFKLYYQATVTKTAWYWCQNRDIDQWNRTEPSEIIPHIYNHLTFDKPDKNEKWGKDSLFN
KWCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGMGKD
FMSKPPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRQPTEWEKISAIYSSDKGLISRI
YKELKQFHKKKNNPINKWVKDMNRHFSKEDIYAANRHMKKCSSSLAIREMQIKTTMRYHL
TPVRMAIIKKSGNNRY

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_2|1131_bp
atgagtgaaatcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggaggtgaaggacctctccaaggagaactacaaaccactgctcaatgaaataaaa
gaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtg
aaaacggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcttcacagaattgggaaaaactactttaaagttcatatggaaccaaaaaaga
gcctgcattgccaagtcaatcctaagccaaaagaacaaagctggaagcatcacgctacct
gacttcaaactatactaccaggctacagtaaccaaaacagcatggtactggtgccaaaac
agagatatagaccaatggaacagaacagagccctcagaaataataccacacatctacaac
catctgacctttgacaaacctgacaaaaacgagaaatggggaaaggattccctatttaac
aaatggtgctgggaaaactggttagccatatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttaaacgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggac
ttcatgtctaaaccaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acagaatgggagaaaatttctgcaatctactcatctgacaaagggctaatatccagaatc
tacaaagaactcaaacaatttcacaagaaaaaaaacaaccccatcaacaagtgggtgaag
gatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaa
tgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctc
acaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtactag

>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_3|559_aa
MAQLPAAPDGAPGLCRGALTCFDASKEADGHRARDGLYYQFLSPGDSEEYFATYFNEKIS
IPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGL
LLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLS
VGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEASGCRTPQIEQ
AVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVV
SVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIW
AVGILAAGQSSTMTGTYSGQFVMETVICSYVFFQGFLNLKWSRFARVVLTRSIAIIPTLL
VAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAGGILVL
IICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDCGHTGL
LKLQIMRAANPATQAIESF

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_3|1680_bp
atggcccagctcccagctgcaccggatggcgcgcccggcctgtgtcggggtgcgctgacc
tgcttcgacgcctcgaaagaggccgacgggcacagggcaagggatggcctttattaccag
tttttgtcccctggggactcagaggagtacttcgccacttactttaatgagaagatctcc
attcctgaggaggagtactcttgttttagctttcgtaaactctgggctttcaccggacca
ggttttcttatgagcattgcctacctggatccaggaaatattgaatccgatttgcagtct
ggagcagtggctggatttaagttgctctggatccttctgttggccacccttgtggggctg
ctgctccagcggcttgcagctagactgggagtggttactgggctgcatcttgctgaagta
tgtcaccgtcagtatcccaaggtcccacgagtcatcctgtggctgatggtggagttggct
atcatcggctcagacatgcaagaagtcattggctcagccattgctatcaatcttctgtct
gtaggaagaattcctctgtggggtggcgttctcatcaccattgcagatacttttgtattt
ctcttcttggacaaatatggcttgcggaagctagaagcattttttggctttctcatcact
attatggccctcacatttggatatgaggcaagtggctgtcgcactccacagattgaacag
gctgtgggcatcgtgggagctgtcatcatgccacacaacatgtacctgcattctgcctta
gtcaagtctagacaggtaaaccggaacaataagcaggaagttcgagaagccaataagtac
tttttcattgaatcctgcattgcactctttgtttccttcatcatcaatgtctttgttgtc
tcagtctttgctgaagcattttttgggaaaaccaacgagcaggtggttgaagtctgtaca
aataccagcagtcctcatgctggcctctttcctaaagataactcgacactggctgtggac
atctacaaagggggtgttgtgctgggatgttactttgggcctgctgcactctacatttgg
gcagtggggatcctggctgcaggacagagctccaccatgacaggaacctattctggccag
tttgtcatggagacagtcatctgctcctatgttttcttccagggattcctgaacctaaag
tggtcacgctttgcccgagtggttctgactcgctctattgccatcatccccactctgctt
gttgctgtcttccaagatgtagagcatctaacagggatgaatgactttctgaatgttcta
cagagcttacagcttccctttgctctcatacccatcctcacatttacgagcttgcggcca
gtaatgagtgactttgccaatggactaggctggcggattgcaggaggaatcttggtcctt
atcatctgttccatcaatatgtactttgtagtggtttatgtccgggacctagggcatgtg
gcattatatgtggtggctgctgtggtcagcgtggcttatctgggctttgtgttctacttg
ggttggcaatgtttgattgcactgggcatgtccttcctggactgtgggcatacgggcctc
ttgaaacttcagataatgagagcagccaaccctgcaactcaggctatagagtccttctga

>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_4|253_aa
MALSRVCWARSAVWGSAVTPGHFVTRRLQLGRSGLAWGAPRSSKLHLSPKADVKNLMSYV
VTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGIISIPPFANYLVFLLMYLFPRQLLIRHF
WTPKQQTDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKKALSRAMLLT
SYLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSPSLSIVFSGLYYSPLWIFN
SAASTVMQQSNCN

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_4|762_bp
atggcgctctccagggtgtgctgggctcggtcggctgtgtggggctcggcagtcacccct
ggacattttgtcacccggaggctgcaacttggtcgctctggcctggcttggggggcccct
cggtcttcaaagcttcacctttctccaaaggcagatgtgaagaacttgatgtcttatgtg
gtaaccaagacaaaagcgattaatgggaaataccatcgtttcttgggtcgtcatttcccc
cgcttctatgtcctgtacacaatcttcatgaaaggtattatttccattccaccttttgcc
aactacctggtcttcttgctaatgtacctgtttcccaggcaactactgatcaggcatttc
tggaccccaaaacaacaaactgatttcttagatatctatcatgctttccggaagcagtcc
cacccagaaattattagttatttagaaaaggtcatccctctcatttctgatgcaggactc
cggtggcgtctgacagatctgtgcaccaagaaagccttgagccgggccatgcttctcaca
tcttacctgcctcctcccttgttgagacatcgtttgaagactcatacaactgtgattcac
caactggacaaggctttggcaaagctggggattggccagctgactgctcaggaagtaaaa
tcgccttcactctccattgtcttttctgggctgtattacagccctctgtggatcttcaac
tctgctgcctccactgtgatgcagcagtccaactgtaactga

>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_5|998_aa
MGDITAGNLNGILGMKLHQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRRLQYT
EHQQLEGWRWNRPGDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCI
STEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHLHSASCQIKVFKPKGADRKQKTDRE
KMEKRTPHEKEKYQPSYETTILTECSPWPEITYVNNSPSPGFNSSHSSFSLGEGMVRPRL
TIYVCQESLQLREQQQQQQQQQQKHEDGDSNGTFFVYHAIYLEELTAVELTEKIAQLFSI
SPCQISQIYKQGPTGIHVLISDEMIQNFQEEACFILDTMKGCSRAAASGAGLRAGFGFAA
VTAYNSRHAAGISAEQIRVLLELKSKDGGKRFVPREMDYLRLLGCMKETPLKPMDAFTGS
GLKRKFDDVDVGSSVSNSDDEISSSDSADSCDSLNPPTTASFTPTSILKRQKQLRRKNVR
FDQVTVYYFARRQGFTSVPSQGGSSLGMAQRHNSVRSYTLCEFAQEQEVNHREILREHLK
EEKLHAKKMKKASECKLGDTCLEIDGMFVEIDFRVGGKMRRVFEKLGPRKVMLTKNGTVE
SVEADGLTLDDVSDEDIDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRA
IRLSREECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRV
RTHYLHTIMKLELESKRQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAVM
HLQSAEELERLKAEEDSSGSSASLDSSIESLGVCILEEPLAVPEELCPGLTAPILIQAQL
PPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYYQVEQRPVLGVKGEPGTEEGSASFPK
EKDLNVFSLPVTSLVACSSTDPAALCKSEVGKTPTLEALLPEDCNPEEPENEDFHPSWSP
SSLPFRTDNEEGCGMVKTSQQNEDRPPEDSSLELPLAV

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_5|2997_bp
atgggggatatcacagcaggtaatctaaatggaattcttgggatgaaactccaccaagga
cagtcttatgaaattcgaatgctagacaataggaaacttggagaacttccagaaattaat
ggcaaattggtgaagagtatattccgtgtggtgttccatgacagaaggcttcagtacact
gagcatcagcagctagagggctggaggtggaaccgacctggagacagaattcttgacata
gatatcccgatgtctgtgggtataatcgatcctagggctaatccaactcaactaaataca
gtggagttcctgtgggaccctgcaaagaggacatctgtgtttattcaggtgcactgtatt
agcacagagttcactatgaggaaacatggtggagaaaagggggtgccattccgagtacaa
atagataccttcaaggagaatgaaaacggggaatatactgagcacttacactcggccagc
tgccagatcaaagttttcaagcccaaaggtgcagacagaaagcaaaaaacggatagggaa
aaaatggagaaacgaacacctcatgaaaaggagaaatatcagccttcctatgagacaacc
atactcacagagtgttctccatggcccgagatcacgtatgtcaataactccccatcacct
ggcttcaacagttcccatagcagtttttctcttggggaagggatggtgcgtccaaggtta
accatttatgtttgtcaggaatcactgcagttgagggagcagcaacaacagcagcagcaa
cagcagcagaagcatgaggatggagactcaaatggtactttcttcgtttaccatgctatc
tatctagaagaactaacagctgttgaattgacagaaaaaattgctcagcttttcagcatt
tccccttgccagatcagccagatttacaagcaggggccaacaggaattcatgtgctcatc
agtgatgagatgatacagaactttcaggaagaagcatgttttattctggacacaatgaaa
ggttgcagcagagctgccgcctcgggagccggtttgcgcgccggcttcggctttgcagca
gttaccgcctacaactcccggcatgctgctggcatttctgctgagcagattcgtgtcctt
ctggaacttaaatccaaagatggaggaaaaagatttgtacctagggaaatggactatctc
agactccttggttgtatgaaagaaacccctttgaaaccaatggatgcattcacgggctcg
ggtctcaagaggaagtttgatgatgtggatgtgggctcatcagtttccaactcagatgat
gagatctccagcagtgatagtgctgacagctgcgacagcctcaatcctcctaccactgcc
agcttcacacccacatccatcctgaagcggcagaagcagctgcggaggaagaatgtacgc
tttgaccaggtgactgtatactactttgcccggcgccaaggttttaccagtgtgcccagc
cagggtggtagctctctgggcatggcccagcgccataactctgtacggagctatacactc
tgtgagtttgcccaggaacaggaggtgaaccatcgagagattctgcgtgagcacctgaag
gaagagaaactccatgccaagaaaatgaagaaggcaagtgagtgtaaattaggggataca
tgtctggaaatagacggtatgtttgtggaaatagattttcgtgtaggagggaagatgaga
cgggtttttgagaagcttggacccagaaaggtgatgctgaccaagaatgggacagtggag
tcggtggaggctgatggcctgacgctggatgatgtgtcagatgaagatattgatgtggaa
aatgtggaggtggatgattacttcttcctgcagcctctgcccaccaaacggcgacgggcc
ctgctgagggcttctggggtccaccgtattgatgctgaagagaagcaagaacttcgagcc
atccgcctgtcacgggaagaatgtggttgtgactgccgactgtattgtgacccagaagcg
tgtgcctgcagccaggctgggattaaatgccaggtggatcgcatgtcctttccatgtggc
tgctcccgggatggctgtgggaacatggcaggacgcattgaatttaatccaatccgggtc
cggactcattacctccacaccattatgaagctggagctggagagcaagcggcaggtgagc
cgcccagcagccccagatgaggagccctccccgactgccagttgcagcctgacaggagca
cagggctctgagacccaggacttccaggagttcattgctgagaatgagacagcagtgatg
cacctgcagagtgcagaggaactggagcggctcaaggcagaagaagattccagcggctct
agtgccagcctggactcgagcatcgagagcctgggtgtgtgcatcctagaggagcctctg
gctgtccccgaagagctgtgcccaggccttacagcccccattctcatccaggctcagctg
cccccaggctcctctgtcctgtgttttaccgagaactcagaccacccaactgcctcaacg
gtgaacagcccatcctacttgaacagtgggcccctggtctattatcaagtggagcagagg
ccagtcttgggagtgaaaggagagcctggtacggaagaaggctcagcctctttcccaaag
gagaaggatctgaatgtcttctctctccctgttacctcactcgtggcttgtagctccaca
gacccagctgccctctgtaaatcagaggtggggaaaacacccaccctagaagctctattg
cccgaagattgtaaccctgaggagcctgaaaatgaagacttccacccttcctggtccccc
tcaagcctccccttccgcacggacaatgaagagggctgtgggatggtgaagacctcccag
cagaatgaggatcggccccctgaagattcttccttagaactccctctggcagtgtga

>gi568815586r:50963749_51176561|GENSCAN_predicted_peptide_6|220_aa
MAWALKLPLADEVIESGLVQDFDASLSGIGQELGAGAYSMSKDLQNVNITLRIIFQPVAS
QLPRIFTSIGEDYDEPVLTYITTEILKSVVARFDAGEVITQRELVSRQVSNDLTEQAATF
GLILDDVSLTYLTFGKEFTEAVEAKQVAQQEAERARFVKEKAEQQKKAEQQKKVEQQKKA
AVISAEGDSKATELIANSLATAGDGLMELCKLEAAEALGT

>gi568815586r:50963749_51176561|GENSCAN_predicted_CDS_6|663_bp
atggcctgggctctgaagctgcctctggccgacgaagtgattgaatccgggttggtgcag
gactttgatgctagcctgtccgggatcggccaggaactgggtgctggtgcctatagcatg
agcaaagatttacagaatgtcaatatcacactgcgcatcatcttccagcctgttgctagc
cagcttcctcgcatcttcaccagcatcggagaggactatgatgagcctgtgctgacgtac
atcacgaccgagatcctcaagtcagtggtggctcgctttgatgctggagaagttatcact
cagagagagctggtctccaggcaggtgagcaacgaccttacggagcaagcagccacattt
gggctcatcctggacgacgtgtccttgacatatctgacctttggaaaggagttcacagaa
gcagtggaagccaaacaggtggctcagcaggaagcagagagggccagatttgtgaaggaa
aaggctgagcagcagaaaaaggctgagcagcagaaaaaggttgagcagcagaaaaaggca
gccgtgatctctgctgagggcgactccaaggcaaccgagctgattgccaactcactggcc
accgcgggggacggcctgatggagctgtgcaagttggaagccgcggaggctctcggaaca
tga