GENSCAN 1.0	Date run:  6-Nov-116	Time: 07:54:22

Sequence gi568815586r:12561204_12762448 : 201245 bp : 42.84% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +    302    462  161  0  2  105   39   159 0.814   9.82
 1.02 PlyA +   1443   1448    6                               1.05

 2.10 PlyA -   2294   2289    6                               1.05
 2.09 Term -   7212   6998  215  1  2   37   42   258 0.892  12.51
 2.08 Intr -  21272  21197   76  2  1   51   75    33 0.298  -3.53
 2.07 Intr -  21360  21307   54  0  0   66   63    87 0.408   2.26
 2.06 Intr -  35440  35280  161  2  2  126   39    79 0.266   5.59
 2.05 Intr -  39047  38929  119  1  2  100   22    81 0.166   1.89
 2.04 Intr -  39372  39275   98  0  2  125   40    53 0.110   2.09
 2.03 Intr -  50838  50668  171  0  0   85   47   126 0.005   7.42
 2.02 Intr -  55644  55547   98  1  2   76   34   112 0.260   3.41
 2.01 Init -  55871  55826   46  2  1   49   58    47 0.563  -1.30
 2.00 Prom -  55980  55941   40                              -5.95

 3.00 Prom +  62157  62196   40                              -5.95
 3.01 Init +  62622  62669   48  2  0   43   75    47 0.399  -0.10
 3.02 Intr +  63219  63426  208  2  1   22   91   218 0.536  13.23
 3.03 Intr +  64669  64691   23  2  2   71   37    17 0.068  -8.76
 3.04 Intr +  74574  74771  198  2  0   22   95   233 0.869  16.03
 3.05 Intr +  84502  84575   74  0  2   66   77    39 0.073  -2.11
 3.06 Intr +  86069  86206  138  2  0   43   44   151 0.108   4.86
 3.07 Intr +  96639  96761  123  0  0  -14   91   165 0.083   5.38
 3.08 Intr +  99408  99505   98  0  2   66   92    66 0.033   3.53
 3.09 Intr + 100554 101080  527  1  2  -60   66   642 0.042  38.93
 3.10 Intr + 104132 104257  126  1  0   67   -2   146 0.023   3.46
 3.11 Intr + 112346 112471  126  1  0   63    9   116 0.003   1.16
 3.12 Intr + 127625 127711   87  1  0   46   63   102 0.033   2.75
 3.13 Intr + 133683 133765   83  2  2   66  111    26 0.094   0.22
 3.14 Intr + 135257 135495  239  2  2  -51   14   226 0.007  -2.36
 3.15 Term + 153287 153654  368  0  2  117   42   199 0.948  11.98
 3.16 PlyA + 154109 154114    6                               1.05

 4.00 Prom + 156130 156169   40                              -9.55
 4.01 Sngl + 156637 157176  540  0  0   53   37   538 0.555  40.63
 4.02 PlyA + 157578 157583    6                               1.05

 5.04 PlyA - 158695 158690    6                               1.05
 5.03 Term - 163011 162786  226  2  1    8   55   213 0.148   5.27
 5.02 Intr - 190641 190613   29  0  2  114   86    15 0.014  -0.10
 5.01 Init - 198555 198478   78  0  0   82   44    91 0.451   5.21

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 100619 101080  462  1  0   65   66   565 0.847  47.74


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:12561204_12762448|GENSCAN_predicted_peptide_1|53_aa
XSVNKEVTRRRAPQRQDPSPCPKIEGFFGWLVEESSTVTTQVASLLTPKANWG

>gi568815586r:12561204_12762448|GENSCAN_predicted_CDS_1|162_bp
nctagtgtaaataaagaagtcactaggcgtcgggccccccaacgccaagacccgagcccc
tgtccgaaaattgagggctttttcggttggttggttgaagaaagcagcaccgtcaccacc
caggtggcctcgctgcttacaccaaaggcgaactggggataa

>gi568815586r:12561204_12762448|GENSCAN_predicted_peptide_2|345_aa
MAECGELAANSFITTGHSHHTSKPQSSSSLTLKKMGRESVTHTECEGKFASLMPESRGRG
TSSGMAERTLEAAPNASLRRRRLLLPLHDSLWVFTDALESRRDRRVRPKYVLVTFLPMAS
RGRDHNFSSWSPTPPPMLHEKSYLCSFARSPQGSSVPSQSAKMHGKAVLLFPQVPLGGEE
RVAPLVQVPTLEEREERQRGSEGKEETEKEGVKEREKERQRERGRDRDKKACCQQQQPSF
TGQGVSTAPKKTTQHSAGDPALIPLSPPNHKGHAEGERDCVQKQAYSHGIVRKLKVDKSR
KKLLVDQAEAHWPKTKEVCKLHDECLQAKKEEIIKMLSKEEETER

>gi568815586r:12561204_12762448|GENSCAN_predicted_CDS_2|1038_bp
atggcagagtgtggagaactcgcagcaaactcatttatcaccactgggcacagccaccat
acttccaaaccccaatcctcatcttcccttacactgaagaaaatgggacgagagagtgtg
actcatacagaatgtgagggaaaattcgcttccctgatgccagagtcacggggacgaggg
accagttcaggaatggcagagcggaccctggaggcggccccaaacgcctcccttcgccgc
cgccgcctcctcctccccctccatgacagtctctgggtgtttacagacgctctggagagc
cgccgagaccggagggtgaggcccaaatacgtgcttgtaaccttcctgcccatggcttcc
agaggacgagatcataacttctcttcatggtcgcccactcctccccctatgctgcatgag
aaaagctacctctgcagttttgccaggtccccgcaaggcagttcagtccccagccaaagt
gctaagatgcacggcaaggctgttctcctgtttccacaggtgcccctgggaggggaagag
agagtagctccactcgtgcaagtccctaccctagaggagagagaggagaggcagagaggc
agtgagggaaaggaagagacagaaaaagaaggagtcaaagagagagagaaagagaggcag
agagagagaggaagagacagagacaaaaaggcatgttgccagcagcagcagccttctttc
acaggacagggagtcagtacagcaccaaagaagaccactcagcacagtgccggagaccct
gccctgattcccctttctcctcccaaccacaaaggccatgcagaaggtgaaagggattgt
gttcaaaaacaagcgtattctcatggaattgtccgcaagctgaaggtagacaagtcccgc
aagaagctcctggtggaccaggctgaggcccactggcctaagactaaggaagtgtgcaaa
cttcatgacgagtgcctccaggccaagaaggaggagatcatcaagatgttgtccaaggag
gaagagaccgagagataa

>gi568815586r:12561204_12762448|GENSCAN_predicted_peptide_3|821_aa
MWMGRKSSDKCPYKTKGVSEAGYFPDPFTGLTTGASYTQPTTLNSLQEGACEQMSEGTGV
NEHGNRPAALVLAGVNFMQAQWQHPEFYSVWDKVVGGKVKKPGKRGRKPAKIDLKAKLER
SRQSARECRARKKLRYQYLEELVSSRERAICALREELEMLAFAGSPEENQLCASLPNLMF
SDIRLYRKHDWGGLRKLTVMMEDKVRAGILHGSIGTRDRGYHTLLNNRIFSRLDINVFDE
DEKKGRIQIPLKGCIPVPSLLTDGLREPGARILIKIQPQKTCQQVPIYGVLSIADLASGY
LEEAHQEVDDSVGSAFPRGGEEIVTMTVPVGAIEKEHRGHKACIKDPRCRNHFLGFFSGH
LEAQRIDDGVEPVYADGEENVDLDTWSEILKISHNLARCTTQRPPSSGELEQDERRAGNA
DEKVSTCHGDHKVVGGRLSPPTPMDDQTNQGIAEDRKQPQNPKEDAGCGHFPGFQHIVKL
LYTHESVCPFPQPNHLEAEDPNAQKQDEGARGVPESRFPLLGLVLDGVVRERFSEEVIWQ
LKPQRQEVRHNIQAEEMMSAKTLVGHEFTMSSPAAGFSITGQHVPQGSGRQGHFPMHFTH
TAQLPGYTLGCQNEMKSLSWLAAFLWGRGIPRRRSLRGPEGRTTTSSETKFFKKVKIEEV
SQFITLEPAFCLAFPLFTLRKSPLAATQVTVLLPLRLRGGCEDYRNLGWLMGRFSALSRK
TAVKMATKTSRRTGGFGETAHFRAVQCRAFRLLPGSTFNTVYLKIFPLAYSLAAAHFAEG
WRSDLYAPCSFRDSIVFFFTRRRYYSRRLRSHYLLYRSPVP

>gi568815586r:12561204_12762448|GENSCAN_predicted_CDS_3|2466_bp
atgtggatgggccgtaaatccagtgacaagtgtccttataagactaagggagtcagtgaa
gcaggatatttccctgaccctttcacgggactcacaacgggtgcctcatatactcagccc
accactctcaactccttgcaggagggagcatgtgagcaaatgagtgagggaactggagtg
aatgagcacgggaatcggccagctgctttggtgctagcaggagtgaactttatgcaggcc
caatggcagcatccagagttttacagtgtttgggacaaagtggttggaggcaaagtaaag
aagcccggtaaacgtggtcggaagccagccaaaattgacttgaaagcaaaacttgagagg
agccggcagagtgcaagagaatgccgagcccgaaaaaagctgagatatcagtatttggaa
gagttggtatccagtcgagaaagagctatatgtgccctcagagaggaactggaaatgctg
gcttttgctggctccccagaggagaaccaattgtgtgcatctcttcccaacttgatgttc
agtgacatcaggctgtacaggaagcatgactggggaggcctcaggaaacttacagtcatg
atggaagacaaagtgagagcaggcatcttgcatggcagcattgggaccagggatcggggg
taccacacgcttttaaataaccggatcttcagcaggctggacattaacgtattcgatgaa
gatgagaagaaagggagaattcagattccactcaaaggatgcatccctgtcccttccctc
ctcaccgacggtttacgagaacctggagccagaatcctgattaaaatccaaccacagaag
acttgccagcaagttccaatatatggcgtgctttccatagcagatctggctagtggttac
ttggaggaagcccaccaagaagtggatgacagtgtaggcagtgccttcccaagaggaggg
gaggaaatagttacaatgactgtcccagttggagccatagaaaaagagcacaggggtcac
aaagcctgcatcaaagacccacgatgccgcaatcattttcttggctttttctctggacac
cttgaagctcagaggatagacgatggtgtagaaccggtctatgcagatggagaggagaac
gtagatctggacacctggagtgagatattgaaaatatcgcacaaccttgcacgttgcact
acccagcgtccaccttccagtggtgaactggagcaggacgaaaggcgtgctggcaacgct
gatgagaaggtcagcacatgccatggagaccacaaagtagttggtggtagactgagtcct
cctactcctatggatgaccaaacaaaccagggaattgccgaagatagaaaacaaccacag
aatcccaaagaagatgctggctgtggccacttccccgggtttcagcacatagtgaagctg
ctttacacccatgagtctgtctgcccatttccccagcccaaccacttggaagcagaggat
cccaatgctcagaaacaggacgagggagcccgaggagttcctgagtctagatttcccctg
ctgggtctggttttagatggagtggttagagaaaggttctctgaagaggttatatggcag
ctgaaaccccaacgacaggaagtccgccataacattcaggcagaagaaatgatgagtgca
aagaccctggtgggccacgagttcaccatgagttcaccagctgcaggcttcagcatcaca
ggacagcatgttccccagggatcaggcagacaagggcattttcctatgcacttcacacat
acagcgcagctgccaggatatactttaggctgccaaaatgaaatgaagtcactttcttgg
ctagcggcatttctctggggccgaggaattccacgaagaagatctctgcgaggcccagaa
ggccgcacaactacttcttcagaaacaaaattttttaaaaaagtaaaaatagaggaagtc
agccagtttatcaccttggaaccagcgttttgtttggcttttccgcttttcactctacga
aaaagcccattggcggctacccaggttaccgtcctgttgccattgcgcctgcgcggcggt
tgtgaagattacagaaatctgggatggcttatgggacgcttctcagccctaagtaggaaa
acagcagtgaaaatggcaaccaaaacatcacgcaggactgggggttttggggaaacagct
cactttagagcagtgcagtgtagagctttccgtcttttaccagggtccacctttaacact
gtttatctgaaaattttccccctggcttactcgcttgcagctgcccactttgcagaagga
tggcgctctgatctctacgctccctgttccttcagggactccatagtattttttttcacg
cgtcgtcgctactacagcagacgcctgcgttctcattatttgctgtacagatctccggtg
ccttga

>gi568815586r:12561204_12762448|GENSCAN_predicted_peptide_4|179_aa
MSNVRVSNGSPSLERMDARQAEHPKPSACRNLFGPVDHEELTRDLEKHCRDMEEASQRKW
NFDFQNHKPLEGKYEWQEVEKGSLPEFYYRPPRPPKGACKVPAQESQDVSGSRPAAPLIG
APANSEDTHLVDPKTDPSDSQTGLAEQCAGIRKRPATDGNDPFPTIECVWGPALPAGGC

>gi568815586r:12561204_12762448|GENSCAN_predicted_CDS_4|540_bp
atgtcaaacgtgcgagtgtctaacgggagccctagcctggagcggatggacgccaggcag
gcggagcaccccaagccctcggcctgcaggaacctcttcggcccggtggaccacgaagag
ttaacccgggacttggagaagcactgcagagacatggaagaggcgagccagcgcaagtgg
aatttcgattttcagaatcacaaacccctagagggcaagtacgagtggcaagaggtggag
aagggcagcttgcccgagttctactacagacccccgcggccccccaaaggtgcctgcaag
gtgccggcgcaggagagccaggatgtcagcgggagccgcccggcggcgcctttaattggg
gctccggctaactctgaggacacgcatttggtggacccaaagactgatccgtcggacagc
cagacggggttagcggagcaatgcgcaggaataaggaagcgacctgcaaccgacggtaat
gaccctttcccaaccatagaatgtgtttggggccccgctttgcctgctggagggtgttaa

>gi568815586r:12561204_12762448|GENSCAN_predicted_peptide_5|110_aa
MPIYKLVTPNRVTGYTDVKAARAADGRSMDYIGHTSSDIPTAGEAAGYSGGESVCGEEWE
LSLLSQRRGEEEGGKFLRNRPARLRGGGAAARARELRATTATVRGAARYR

>gi568815586r:12561204_12762448|GENSCAN_predicted_CDS_5|333_bp
atgcccatttataaactagtcactcccaacagggtaactggatatactgacgtcaaggca
gcccgagctgcagacgggagatcaatggattatattggacacacaagctccgatatcccc
acggccggggaggcggccggttactcaggtggagagtccgtttgcggagaggagtgggag
ctttcgctgctttctcagcgcagaggagaggaggagggaggaaagtttctgagaaaccgc
ccagcccggctgcgcggcggaggcgcggccgcccgggcgcgggaactgcgcgcgacgacg
gcgacagtgcggggggctgcacgttacagatga