GENSCAN 1.0	Date run:  6-Nov-116	Time: 14:57:49

Sequence gi568815586f:9952688_10165629 : 212942 bp : 38.40% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 PlyA -   1845   1840    6                               1.05
 1.03 Term -   7371   7258  114  0  0   58   34    95 0.146  -1.31
 1.02 Intr -  11067  10995   73  2  1   86   88    25 0.372   0.79
 1.01 Init -  13777  13569  209  1  2   61   98   140 0.786   8.70
 1.00 Prom -  17499  17460   40                              -4.55

 2.00 Prom +  22426  22465   40                              -4.85
 2.01 Sngl +  23400  23861  462  2  0   96   32   333 0.605  24.41
 2.02 PlyA +  24757  24762    6                               1.05

 3.00 Prom +  36204  36243   40                              -3.65
 3.01 Init +  36859  36910   52  0  1   51   73    72 0.399   3.37
 3.02 Term +  37584  37930  347  1  2   44   47   224 0.461   7.57
 3.03 PlyA +  37947  37952    6                               1.05

 4.06 PlyA -  38405  38400    6                               1.05
 4.05 Term -  40904  40737  168  2  0   38   54    73 0.258  -4.20
 4.04 Intr -  44313  44159  155  1  2   67   83   115 0.964   7.77
 4.03 Intr -  44592  44473  120  1  0   42   89    98 0.924   4.85
 4.02 Intr -  45693  45595   99  1  0   83   78    49 0.786   2.56
 4.01 Init -  46413  46350   64  0  1   87  111    71 0.930  10.66
 4.00 Prom -  46851  46812   40                              -5.75

 5.00 Prom +  55928  55967   40                              -4.35
 5.01 Init +  58073  58163   91  1  1   45   75   105 0.936   5.60
 5.02 Intr +  60098  60196   99  0  0  106   75    57 0.900   5.36
 5.03 Intr +  61836  62054  219  1  0   -8   89   206 0.671   8.45
 5.04 Intr +  70097  70201  105  0  0   77   81    74 0.427   4.87
 5.05 Term +  84740  85071  332  0  2   48   36   175 0.318   2.13
 5.06 PlyA +  85261  85266    6                              -0.45

 6.00 Prom +  85941  85980   40                              -4.05
 6.01 Init +  86466  86532   67  2  1   54   78   133 0.955   8.19
 6.02 Intr +  88779  88933  155  1  2   76   99   135 0.999  12.27
 6.03 Intr + 108729 108821   93  2  0   42   85    61 0.006   0.44
 6.04 Intr + 112045 112166  122  0  2   87   95    35 0.038   2.47
 6.05 Term + 115422 115455   34  0  1  115   48    26 0.010  -2.62
 6.06 PlyA + 115848 115853    6                               1.05

 7.07 PlyA - 116847 116842    6                               1.05
 7.06 Term - 118826 118646  181  1  1   85   37   140 0.342   4.70
 7.05 Intr - 120672 120606   67  1  1   86   67    53 0.717   0.04
 7.04 Intr - 128726 128550  177  0  0    2  107   136 0.193   5.87
 7.03 Intr - 136535 136437   99  0  0  117   75    72 0.466   7.96
 7.02 Intr - 146301 146121  181  0  1   41   80   213 0.509  14.32
 7.01 Init - 146654 146586   69  2  0   44   87    26 0.424  -0.80
 7.00 Prom - 147249 147210   40                              -9.75

 8.00 Prom + 152626 152665   40                              -6.15
 8.01 Sngl + 154077 154487  411  2  0   32   42   226 0.161   8.44
 8.02 PlyA + 154588 154593    6                               1.05

 9.00 Prom + 155834 155873   40                              -3.65
 9.01 Init + 156011 156090   80  1  2   83   47    53 0.790   1.28
 9.02 Term + 159004 159619  616  1  1   70   41   822 0.758  68.65
 9.03 PlyA + 160292 160297    6                               1.05

10.07 PlyA - 163027 163022    6                               1.05
10.06 Term - 163342 163193  150  1  0   72   48    81 0.055  -0.57
10.05 Intr - 172761 172610  152  1  2   83  111     5 0.479   1.26
10.04 Intr - 175158 175060   99  1  0   93   92    67 0.538   6.76
10.03 Intr - 175812 175636  177  1  0    8   28   157 0.469   0.67
10.02 Intr - 177464 177293  172  2  1  125   71   122 0.998  12.79
10.01 Init - 186292 186215   78  1  0   24   91    75 0.351   2.51
10.00 Prom - 188992 188953   40                              -6.45

11.00 Prom + 194686 194725   40                              -2.55
11.01 Sngl + 200715 201221  507  2  0   53   48   265 0.883  14.79
11.02 PlyA + 201886 201891    6                               1.05

12.03 PlyA - 203568 203563    6                               1.05
12.02 Term - 207334 207193  142  0  1   84   38   117 0.935   2.72
12.01 Init - 207814 207660  155  1  2   87   89    62 0.849   5.70

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_1|131_aa
MSHLCKTPLEIRLSISPAATPIAPGTLPQGSLTDSFPDLLGLTTEDCHCPITSEAYRTIT
DTLGNSHSGGFASHKVSSSSVDPLPPCVYLLIGQLVFSLMGFPGLQYDSIPWFQTGKRQV
HTEMKSVGETS

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_1|396_bp
atgtcccatctgtgcaagaccccactggaaatcagactgtccatctcaccggcagccact
cccatagcccctggaactctgccccaaggctctctgactgactccttcccagatcttctc
ggcttaacaactgaagactgtcactgcccaatcacctcagaagcctacaggaccatcaca
gacactctaggtaactctcacagtggaggttttgcctcgcacaaggtctcttcttcctct
gtggatcctctacctccatgtgtctacctgctaattggacagctagtcttcagcctgatg
ggatttccaggtcttcagtatgattcgattccctggtttcaaacagggaagaggcaagtc
catacagaaatgaagtctgttggagagactagttaa

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_2|153_aa
MGCSWITSARTVQKGNVRSEAPHRVPTGVLSSGAVRSGPPSSSSQNGRSTDSMHCPLGKA
ADTQYQPMKAAMRETVPCKATGAELPKDMGAYLLHQHDLDVRYRAKGDDFGALRFGALWT
CMGPVAPLFWPISPIWNDRIYPMPVLSLYLGSN

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_2|462_bp
atggggtgctcatggataacctctgctaggacagtgcagaagggaaatgtgaggtcagaa
gctccacacagagtccccactggggtactgtccagtggagcagtgagaagtggaccaccg
tcctccagctctcagaatggtagatccactgacagcatgcactgtccacttggaaaagct
gcagacactcaatatcagcccatgaaagcagccatgagggagactgtaccttgcaaagcc
acaggagcagagctgcccaaagacatgggagcctacctcttgcatcagcatgacctggat
gtgagatatagagccaaaggagatgattttggagctttaagatttggtgccctttggact
tgcatggggcctgtagcccctttgttttggccaatttctcccatttggaatgaccgtatt
tatccaatgcctgtactctcattgtatctaggaagtaactaa

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_3|132_aa
MGERGEEATEEMLEASREQSKLKTTWRQLTILDAIKKICDSWKEDKVSTLTDTWKKLNQT
LMDNLQAFKTSVVEVTADVVEIARELELEVEPEDVAELMQFYQETLTNEELLFMDEQRKW
FLRQILFLVNML

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_3|399_bp
atgggtgagagaggtgaagaagctacagaagaaatgttggaagctagcagagagcaaagt
aaattgaaaaccacctggagacaacttaccattctagatgccattaaaaagatttgtgat
tcatggaaggaagacaaagtgtcaacattaacagacacttggaagaagttgaatcaaacc
ctcatggataacttgcaggcgttcaagacttcagtggtggaagtaactgcagatgtggtg
gaaatagcaagagaactagaactggaagtggagcctgaagatgtggctgaattgatgcaa
ttttatcaggaaactttaacaaatgaggagttgctttttatggatgagcaaagaaaatgg
ttcttgagacaaatattattcctggtgaacatgctgtga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_4|201_aa
MQDEDGYITLNIKTRKPALISVGSASSSWWRVMALILLILCVGMVVGLVALGIWSVMQRN
YLQGENENRTGTLQQLAKRFCQYVVKQSELKGTFKGHKCSPCDTNWRYYGDSCYGFFRHN
LTWEESKQYCTDMNATLLKIDNRNIVIMRFPIILEPSPSLLQGSYCTYCSLAPNFMLNEI
DIGLFKYAYLVLPSRVELSQQ

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_4|606_bp
atgcaggatgaagatggatacatcaccttaaatattaaaactcggaaaccagctctcatc
tccgttggctctgcatcctcctcctggtggcgtgtgatggctttgattctgctgatcctg
tgcgtggggatggttgtcgggctggtggctctggggatttggtctgtcatgcagcgcaat
tacctacaaggtgagaatgaaaatcgcacaggaactctgcaacaattagcaaagcgcttc
tgtcaatatgtggtaaaacaatcagaactaaagggcactttcaaaggtcataaatgcagc
ccctgtgacacaaactggagatattatggagatagctgctatgggttcttcaggcacaac
ttaacatgggaagagagtaagcagtactgcactgacatgaatgctactctcctgaagatt
gacaaccggaacattgtgataatgcgttttcccattattttggagccatctccatcactt
cttcagggctcctattgtacctactgttcccttgctcctaattttatgctaaatgaaatt
gatattgggctttttaaatatgcatatcttgtactgccaagcagggtggaactttctcaa
caatga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_5|281_aa
MSEEVTYATLTFQDSAGARNNRDGNNLRKRGHPAPSPIWRHAALGLVTLCLMLLIGLVTL
GMMFLQISNDINSDSEKLSQLQKTIQQQQDNLSQQLGNSNNLSMEEEFLKSQISSVLKRQ
EQMAIKLCQELIIHTSVLEVGKCKLKAPAGLVLDEAILFFKKATVTLGTEEGGQRPFRQL
RAKEGTDYEEATDYEEATIPSQGTLTRTRTHSHWDHVDTPIHLTFTFWDMGGNWRTQEKP
MQTRGDRANSTQWPQLGSNFFSQHRYNKTILHKRMLLKNLL

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_5|846_bp
atgtctgaagaagtgacctacgcgacactcacatttcaggattctgctggagcaaggaat
aaccgagatggaaataacctaagaaaaagagggcatccagctccatctcccatttggcgt
catgctgctctgggtctggtaactctttgcctgatgttgctgattgggctggtgacattg
gggatgatgtttttgcagatatctaatgacattaactcagattcagagaaattgagtcaa
cttcagaaaaccatccaacagcagcaggataacttatcccagcaactgggcaactccaac
aacttgtccatggaggaggaatttctcaagtcacagatctccagtgtactgaagaggcag
gaacaaatggccatcaaactgtgccaagagctaatcattcatacttcagttctagaagtt
gggaagtgtaagttaaaggcaccagcaggtttggtgcttgatgaggccattctcttcttt
aagaaggcaactgtaaccttgggaacggaggaaggtggccagagaccattcaggcagctc
agggccaaggagggcactgactatgaagaggccaccgactatgaagaggccaccatccca
tcgcagggcacactcacacgcacccgcactcactcacactgggaccatgtagacacgcca
attcacctaacgttcacattttgggacatgggaggaaactggaggacccaggaaaaaccc
atgcaaacacggggagaccgtgcaaactccacacagtggccccagctgggaagcaatttt
ttttctcaacatcgttataacaaaacaatcttacataaaaggatgttactcaagaacctg
ctttaa

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_6|156_aa
MALILLILCMGMVVGLVALGIWCDYKRSPCDANWTYYGDSCYGFFKHNLTWKESEQYCTD
MKATLLKTDNQNILFNLIYNIQYYVETLGIQKNATKGNVQSNAKEDFITGSLRKIKGSYD
YWVGLSQDGHSGRWLWQDGSSPSPGLAHDLFPVDKS

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_6|471_bp
atggctttgattctgctgatcctgtgcatggggatggttgtcgggctggtggctctgggg
atttggtgtgactataaacgcagcccctgtgatgccaactggacatattatggagatagc
tgctatgggttcttcaaacacaacttgacatggaaagagagtgagcagtactgcactgac
atgaaggctactctcctgaagactgacaaccagaacattctgttcaatcttatttataac
atccaatactacgtggaaacactagggatccaaaagaatgcaactaaaggaaatgtacag
tcaaatgccaaagaggattttatcactggcagcttgaggaagattaaaggaagctatgat
tactgggtggggttgtctcaggatggacacagcggacgctggctttggcaagatggctcc
tctccttctcctggcctggctcatgacctgtttcctgttgataaatcctga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_7|257_aa
MCVLPSYYYSADSEGTTVLHRAILTVARRPRAIRPHFTLTAVGIQMQAKYSSTRDMLDDD
GDTTMSLHSQGSATTRHPEPRRTEHRAPSSTWRPVALTLLTLCLVLLIGLAALGLLFFQY
YQLSNTGQDTISQMEERLGNTSQELQSLQVQNIKLAGSLQHVAEKLCRELYNKAGGLLRP
DSGKAWLWMDGTPFTSELFHIIIDVTSPRSRDCVAILNGMIFSKDCKELKRCVCERRAGM
VKPESLHVPPETLGEGD

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_7|774_bp
atgtgtgtccttccaagttattattattctgcagactctgaaggaaccacagtgctacac
cgtgctattctcacagtagcccggcggcccagggcaatccgaccacatttcactctcacc
gctgtaggaatccagatgcaggccaagtacagcagcacgagggacatgctggatgatgat
ggggacaccaccatgagcctgcattctcaaggctctgccacaactcggcatccagagccc
cggcgcacagagcacagggctccctcttcaacgtggcgaccagtggccctgaccctgctg
actttgtgcttggtgctgctgatagggctggcagccctggggcttttgttttttcagtac
taccagctctccaatactggtcaagacaccatttctcaaatggaagaaagattaggaaat
acgtcccaagagttgcaatctcttcaagtccagaatataaagcttgcaggaagtctgcag
catgtggctgaaaaactctgtcgtgagctgtataacaaagctggagggcttttgcgccct
gacagtggcaaggcctggctgtggatggatggaacccctttcacttctgaactgttccat
attataatagatgtcaccagcccaagaagcagagactgtgtggccatccttaatgggatg
atcttctcaaaggactgcaaagaattgaagcgttgtgtctgtgagagaagggcaggaatg
gtgaagccagagagcctccatgtcccccctgaaacattaggcgaaggtgactga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_8|136_aa
MMISIDAEKAFNKIQQPFMLKTLNKLDIDGTYLKIIRAFYDKPTANIILNGQQQEAFPLK
TGTRQGCLLSPLLFNIVLEVLARTIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVS
AENLLKLISNFRKVSG

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_8|411_bp
atgatgatctcaatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgcta
aaaactctcaataaactagatattgatgggacgtatctcaaaataataagagctttttat
gacaaacccacagccaacatcatactgaatgggcaacaacaggaagcattccctttgaaa
actggcacaagacaaggatgccttctctcaccactcctattcaacatagtgttggaagtt
ctggccaggacaatcaggcaggagaaagaaataaagggtattcaattaggaaaagaggaa
gtcaaattgtccctctttgcagatgacatgattgtatatttagaaaaccccatcgtctca
gccgaaaatctcctcaagctgataagcaacttcagaaaagtctcaggataa

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_9|231_aa
MDEAGNHHSEQTITRTENQTPHVLTRRRLAPTRTQAAPRASRRSDRSALERESKSKIAED
EQINASKNEEDAAKMLVGGLSWDTSKKDLKDYFPKFGEVIDCTIKMDPNIGRARGFGFIL
FKDATNVEKVLDQKEYRLDVRVIDPKKAMAMKKDPVKKIFAEGLNPEATEEKIREYFGEF
GEIEAIEIPVDPKLNKRQGFVFITFKKEPVKKVLEKKFHTISGSKREITVA

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_9|696_bp
atggatgaagctggaaaccatcattctgagcaaactatcacaaggacagaaaaccaaaca
ccacatgttctcactcgtagacgcctggcgccaacgagaacccaggccgccccgagggcg
agtcgtcggagcgaccgcagcgccctcgagcgggaatcaaaatcaaaaatcgccgaggac
gaacagatcaacgccagcaagaacgaggaggacgcagcaaaaatgctcgttggtggcctg
agctgggataccagcaaaaaagatttaaaagactatttccctaaatttggagaggtcatt
gactgtacaataaaaatggatcccaacattggacgggcaagagggtttgggtttatcctg
ttcaaagatgcaaccaatgtggagaaggtcctagaccagaaggagtacaggctggatgtc
cgtgtcattgaccctaaaaaggccatggctatgaagaaggacccggtgaagaaaatcttc
gccgagggtctgaatcctgaagccactgaggaaaagatcagggagtactttggcgagttt
ggggagatcgaggccattgaaattccagtggatccaaagttgaacaaaagacaaggtttt
gtgtttatcacctttaaaaaagaacctgtgaagaaagttctggagaaaaagttccatact
atcagtggaagtaagcgtgagatcacggtggcctag

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_10|275_aa
MSNKVTKVNAMEHRAAMGKIKRDDPQTVISGAERKELPNAISIQGLSRTMEYHPDLENLD
EDGYTQLHFDSQSNTRIAVVSEKAISSKNQWDFRDPTNVKTCRCQCGTEIRSIQLSSQCA
EITIPAIEEEGILTGGEAQQILGSCAASPPWRLIAVILGILCLVILVIAVVLGTMGVLSS
PCPPNWIIYEKSCYLFSMSLNSWDGSKRQCWQLGSNLLKIDSSNELLIWKYTLINRKHPP
FSKRQKTSTLFQETENIHTFPRDRKGEIAASRTSV

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_10|828_bp
atgtccaataaagtaacaaaagtgaatgcaatggaacacagagccgctatgggtaaaata
aagagggatgacccacagacagtcatctcaggagcagaaagaaaagagctcccaaatgct
atatctattcaggggctctcaagaacaatggaatatcatcctgatttagaaaatttggat
gaagatggatatactcaattacacttcgactctcaaagcaataccaggatagctgttgtt
tcagagaaagctatttcctctaagaatcagtgggatttcagggatcctactaatgtcaag
acctgtagatgtcaatgtggaactgaaattaggagcatacagttatcaagccaatgtgcc
gaaattacaattccagcaattgaagaagaaggtatccttactggtggagaagcacagcaa
atcctaggatcgtgtgctgcatctcctccttggcgcctcattgctgtaattttgggaatc
ctatgcttggtaatactggtgatagctgtggtcctgggtaccatgggggttctttccagc
ccttgtcctcctaattggattatatatgagaagagctgttatctattcagcatgtcacta
aattcctgggatggaagtaaaagacaatgctggcaactgggctctaatctcctaaagata
gacagctcaaatgaattgcttatatggaaatatacgttaataaacagaaaacatccaccc
ttttccaagagacagaaaacatccacacttttccaagagacagaaaacatccacactttt
ccaagagacagaaaaggtgaaatagctgctagccgaacctcagtctga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_11|168_aa
MAHKSNGQRCGFLRFSELATTSCGVAQRGELTPPAPLSSLRRVLSSHYRHSRISFARLSG
LGSSLRRTPMAGRPSAPAPNLGISLPRFSETRDSLPAGAQAMNLGPALRRCTPQPRALAP
ASTSAILHPRFRHGLRRGLGTAPKRLGKNSVRHVGLQSTQDGQWSLHR

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_11|507_bp
atggcgcataagagtaacggccagcgctgcgggtttttacgtttcagcgagctcgcaaca
acgtcctgtggtgtggcccagcgcggggagctgaccccaccagctccgctctcaagcctt
cggagagtcctctccagtcactatcgtcattcccgcatttcctttgctaggctgtccggg
ctgggcagctccctcaggcggacacccatggctggcagaccttccgcgcctgcccctaat
ctgggcatatcactccctcggttttctgagactcgggactccttgcccgctggagcgcag
gccatgaatctgggtcccgcactgcggcgctgcacgccgcagcccagggctttggcccca
gccagcacatccgccatcctgcaccccaggttccggcacgggctgcgacggggcctcgga
actgctcccaagcggctgggaaagaactcagtcaggcatgtcggcctgcaaagcacccag
gatgggcagtggagtctgcaccgttga

>gi568815586f:9952688_10165629|GENSCAN_predicted_peptide_12|98_aa
MWIPQTQKHYSPQDFIQQAISYSSFPFWMGLSRRNPSYPWLWEDGSPLMPHLFRVRGAVS
QTYPSGTCAYIQRGAVYAENCILAAFSICQKKANLRAQ

>gi568815586f:9952688_10165629|GENSCAN_predicted_CDS_12|297_bp
atgtggattccacaaactcagaaacattactccccacaggacttcatccagcaagcaatt
tcctattccagttttccattctggatggggctgtctcggaggaaccccagctacccatgg
ctctgggaggacggttctcctttgatgccccacttatttagagtccgaggcgctgtctcc
cagacatacccttcaggtacctgtgcatatatacaacgaggagctgtttatgcggaaaac
tgcattttagctgccttcagtatatgtcagaagaaggcaaacctaagagcacagtga