GENSCAN 1.0	Date run: 16-Jul-119	Time: 16:05:09

Sequence gi568815587r:128739128_128940265 : 201138 bp : 47.53% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4989   5141  153  2  0   83  103   121 0.797  13.08
 1.02 Intr +  18988  19199  212  0  2  106  115   297 0.989  31.91
 1.03 Intr +  22118  22292  175  2  1   47   90    39 0.493  -0.06
 1.04 Intr +  25804  25907  104  0  2   48   89    72 0.213   2.27
 1.05 Intr +  28991  29145  155  2  2  103   91   281 0.999  29.62
 1.06 Intr +  30021  30146  126  1  0   40   75   105 0.845   5.05
 1.07 Intr +  33655  33858  204  2  0  105  106   176 0.547  20.27
 1.08 Intr +  42831  42896   66  1  0  117  115    23 0.734   6.78
 1.09 Intr +  55638  55672   35  1  2   89   64    31 0.045  -1.26
 1.10 Term +  61907  62065  159  1  0   73   43   170 0.173   8.94
 1.11 PlyA +  63280  63285    6                               1.05

 2.00 Prom +  65908  65947   40                              -6.56
 2.01 Init +  67127  67367  241  1  1   77  116   160 0.974  15.75
 2.02 Intr +  68053  68112   60  2  0  134   82     5 0.888   3.21
 2.03 Intr +  70030  70077   48  2  0   77  105    59 0.973   5.15
 2.04 Intr +  71332  71693  362  2  2   71   61   518 0.427  42.34
 2.05 Term +  81484  81504   21  0  0  123   34    24 0.118  -1.19
 2.06 PlyA +  82252  82257    6                               1.05

 3.03 PlyA -  84731  84726    6                               1.05
 3.02 Term -  85777  85412  366  1  0  108   52   101 0.473   3.10
 3.01 Init -  88917  88876   42  0  0   49   94    61 0.569   3.28
 3.00 Prom -  90532  90493   40                              -4.56

 4.03 PlyA -  90930  90925    6                               1.05
 4.02 Term - 101137  99998 1140  1  0   77   42   611 0.881  47.36
 4.01 Init - 103290 103255   36  0  0   85  111    55 0.987   7.51
 4.00 Prom - 113009 112970   40                              -1.96

 5.06 PlyA - 113175 113170    6                              -1.95
 5.05 Term - 113688 113417  272  1  2  108   47   177 0.994  11.25
 5.04 Intr - 115036 114940   97  1  1   85   61    88 0.730   5.38
 5.03 Intr - 120910 120886   25  0  1   65  107    52 0.236   2.83
 5.02 Intr - 121534 121480   55  2  1   78   58    45 0.554  -1.46
 5.01 Init - 125876 125813   64  2  1  104   78    41 0.522   6.01
 5.00 Prom - 128667 128628   40                              -7.26

 6.00 Prom + 130976 131015   40                              -5.76
 6.01 Init + 131986 132000   15  0  0   62  115    -5 0.028   0.01
 6.02 Intr + 137184 137429  246  2  0   67   55   129 0.006   5.16
 6.03 Intr + 141234 141369  136  2  1   25   44    98 0.003  -0.76
 6.04 Intr + 151320 151397   78  1  0   58   91    88 0.930   5.62
 6.05 Term + 151513 151856  344  2  2  117   38   109 0.354   3.47
 6.06 PlyA + 154317 154322    6                               1.05

 7.07 PlyA - 154512 154507    6                              -0.45
 7.06 Term - 155443 155316  128  2  2  103   47   106 0.983   6.44
 7.05 Intr - 161582 161435  148  2  1   40  113    85 0.706   6.01
 7.04 Intr - 162758 162687   72  2  0   51   94    62 0.416   2.70
 7.03 Intr - 163102 163042   61  0  1    6   53    60 0.163  -6.96
 7.02 Intr - 164327 164240   88  0  1   56  105    54 0.487   2.93
 7.01 Init - 165439 165304  136  1  1   61   95   131 0.820   9.71
 7.00 Prom - 169224 169185   40                              -3.06

 8.00 Prom + 169505 169544   40                              -4.66
 8.01 Init + 172147 173083  937  0  1   73  110  1543 0.708 148.91
 8.02 Intr + 177282 177572  291  1  0   96   55   281 0.858  22.71
 8.03 Intr + 193377 193492  116  1  2    3   47   144 0.441   1.97
 8.04 Intr + 197607 197712  106  2  1   64   86    50 0.298   2.19
 8.05 Intr + 197810 197900   91  0  1   93   34    63 0.210   0.45
 8.06 Intr + 197927 198083  157  2  1   41   83   122 0.235   7.01
 8.07 Intr + 198303 198448  146  2  2   70  105    47 0.529   3.68

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  62041  61915  127  1  1   65   22   112 0.805   2.84
S.002 Init + 105126 105150   25  2  1   95   82    43 0.851   4.09
S.003 Term - 137455 137106  350  2  2   31   39   243 0.850   8.35
S.004 Init + 150106 150115   10  0  1   39  116     9 0.923  -0.58


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_1|462_aa
MTINGAMKLMNTELSELTRRQSGHIMHQQKWDNFERDKHFLEQQHKAELFQEALSVVSDD
QSLFDSAYGAAAHLPKADMTASGSPDYGQPHKINPLPPQQEWINQPVRVNVKREYDHMNG
SSHMTLSLTSFGFLYLNLTFSEASPGHLIETSASSLFTLLRVSVLVLITSLTDTWAGPET
VLVQKPGTEDRAIFQRRNTLAGERPNRSPVQLESRESPVDCSVSKCSKLVGGGESNPMNY
NSYMDEKNGPPPPNMTTNERRVIVPAENKIIVQSFSPLAGHSTPASTSKLSCLHKKGVYK
LPRVELVPDPTLWTQEHVRQWLEWAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATT
LYNTEVLLSHLSYLRESSLLAYNTTSHTDQSSRLSVKEGICKIEKFNMGQKQTKIINWYT
GADGHIFTHWAFGCHLKFVSSQEADSRHHIREGLHARSGFFS

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_1|1389_bp
atgacaatcaatggggccatgaagctcatgaacactgagttatctgagcttactcgtaga
cagagtggccatataatgcatcaacaaaagtgggataattttgagcgggataagcatttc
ctggaacaacagcataaagcggaactgttccaggaggctctgtcggtggtgagcgacgac
cagtccctctttgactcagcgtacggagcggcagcccatctccccaaggccgacatgact
gcctcggggagtcctgactacgggcagccccacaagatcaaccccctcccaccacagcag
gagtggatcaatcagccagtgagggtcaacgtcaagcgggagtatgaccacatgaatgga
tccagtcatatgactctctccctcacgagttttgggtttctctacctgaacctcaccttt
tcagaggcctcccctggccacctgatcgaaaccagcgcctcctcactctttaccctgctt
agagtgtctgtcctagttcttatcacctccctcactgacacgtgggcagggcctgaaacg
gtcctagtgcagaagcctgggaccgaggacagggccattttccagaggagaaacaccctg
gcgggcgagcggccaaaccgatcacctgtccagctggagagcagggagtctccggtggac
tgcagcgttagcaaatgcagcaagctggtgggcggaggcgagtccaaccccatgaactac
aacagctatatggacgagaagaatggcccccctcctcccaacatgaccaccaacgagagg
agagtcatcgtccccgcagaaaataaaatcatcgttcagtccttcagtccattggctgga
cactccaccccagctagcaccagcaagctcagctgcctgcacaagaagggtgtttacaaa
ctgccacgtgtagaactggtgccagaccccacactgtggacacaggagcatgtgaggcaa
tggctggagtgggccataaaggagtacagcttgatggagatcgacacatcctttttccag
aacatggatggcaaggaactgtgtaaaatgaacaaggaggacttcctccgcgccaccacc
ctctacaacacggaagtgctgttgtcacacctcagttacctcagggaaagttcactgctg
gcctataatacaacctcccacaccgaccaatcctcacgattgagtgtcaaagaagggatc
tgtaagatcgagaagtttaacatgggtcagaaacagaccaagatcatcaactggtacact
ggtgccgacggccacatttttacacactgggcctttggctgccacctcaagtttgtcagt
tctcaggaggcagactccaggcaccacattcgagagggcctccatgcacgctcaggcttc
ttctcatag

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_2|243_aa
MHWSHKREREIKHTQNSFLLVGIKEGFVDLVALELALEGEAGFGPVAIWAGEDMSLACLT
VSEDLRFLELRMCDAEEVWKGPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQ
IQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALR
YYYDKNIMTKVHGKRYAYKFDFHGIAQALQPHPTESSMYKYPSDISYMPSYHAHQQKEHQ
IIQ

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_2|732_bp
atgcactggtcccataagcgggagagagaaatcaagcacacacagaactcctttcttctg
gttggtatcaaggaaggctttgtggacctggtagcacttgagttagctctggaaggagag
gcaggatttggacctgtggcgatatgggctggggaagacatgagcttggcatgtctgaca
gtcagtgaggacctcaggttcctggagcttaggatgtgtgatgcagaagaagtctggaaa
ggtcctccccttggaggggcacaaacgatcagtaagaatacagagcaacggccccagcca
gatccgtatcagatcctgggcccgaccagcagtcgcctagccaaccctggaagcgggcag
atccagctgtggcaattcctcctggagctgctctccgacagcgccaacgccagctgtatc
acctgggaggggaccaacggggagttcaaaatgacggaccccgatgaggtggccaggcgc
tggggcgagcggaaaagcaagcccaacatgaattacgacaagctgagccgggccctccgt
tattactatgataaaaacattatgaccaaagtgcacggcaaaagatatgcttacaaattt
gacttccacggcattgcccaggctctgcagccacatccgaccgagtcgtccatgtacaag
tacccttctgacatctcctacatgccttcctaccatgcccaccagcagaaggaacatcaa
atcatccagtga

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_3|135_aa
MNPIILQLHELELQPSAPCGSQHPRPPPPELPPASPNIPSPKAAPNPQAAPRALGHPHPA
APELSPVSPGPQRPRPPPTRSCPLSSPHLPVPKAAPHPELLPEYPAPRALGCPSPLSCYP
RTPPPAPSAAPHPQG

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_3|408_bp
atgaatcctatcatcctacaactccacgaactggagctgcagccctcggccccctgtggc
tcccagcaccctcggccacccccacccgagctgccccctgcgtcccccaacattccctcg
cccaaggctgcccccaacccccaagctgctccccgcgccctcggccacccccacccggct
gctcccgagctgtcccctgtatcccccggcccccaacgccctcggccaccccccacccgg
agctgccccctgagttccccccacctccctgtgcccaaggctgccccccacccggagctg
ctcccggagtaccccgccccgcgcgctctcggctgcccctcacccttgagctgctacccg
cgtaccccgccccccgcgccctcggctgccccccacccccagggctga

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_4|391_aa
MNASSRNVFDTLIRVLTESMFKHLRKWVVTRFFGHSRQRARLVSKDGRCNIEFGNVEAQS
RFIFFVDIWTTVLDLKWRYKMTIFITAFLGSWFFFGLLWYAVAYIHKDLPEFHPSANHTP
CVENINGLTSAFLFSLETQVTIGYGFRCVTEQCATAIFLLIFQSILGVIINSFMCGAILA
KISRPKKRAKTITFSKNAVISKRGGKLCLLIRVANLRKSLLIGSHIYGKLLKTTVTPEGE
TIILDQININFVVDAGNENLFFISPLTIYHVIDHNSPFFHMAAETLLQQDFELVVFLDGT
VESTSATCQVRTSYVPEEVLWGYRFAPIVSKTKEGKYRVDFHNFSKTVEVETPHCAMCLY
NEKDVRARMKRGYDNPNFILSEVNETDDTKM

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_4|1176_bp
atgaatgcttccagtcggaatgtgtttgacacgttgatcagggtgttgacagaaagtatg
ttcaaacatcttcggaaatgggtcgtcactcgcttttttgggcattctcggcaaagagca
aggctagtctccaaagatggaaggtgcaacatagaatttggcaatgtggaggcacagtca
aggtttatattctttgtggacatctggacaacggtacttgacctcaagtggagatacaaa
atgaccattttcatcacagccttcttggggagttggtttttctttggtctcctgtggtat
gcagtagcgtacattcacaaagacctcccggaattccatccttctgccaatcacactccc
tgtgtggagaatattaatggcttgacctcagcttttctgttttctctggagactcaagtg
accattggatatggattcaggtgtgtgacagaacagtgtgccactgccatttttctgctt
atctttcagtctatacttggagttataatcaattctttcatgtgtggggccatcttagcc
aagatctccaggcccaaaaaacgtgccaagaccattacgttcagcaagaacgcagtgatc
agcaaacggggagggaagctttgcctcctaatccgagtggctaatctcaggaagagcctt
cttattggcagtcacatttatggaaagcttctgaagaccacagtcactcctgaaggagag
accattattttggaccagatcaatatcaactttgtagttgacgctgggaatgaaaattta
ttcttcatctccccattgacaatttaccatgtcattgatcacaacagccctttcttccac
atggcagcggagacccttctccagcaggactttgaattagtggtgtttttagatggcaca
gtggagtccaccagtgctacctgccaagtccggacatcctatgtcccagaggaggtgctt
tggggctaccgttttgctcccatagtatccaagacaaaggaagggaaataccgagtggat
ttccataactttagcaagacagtggaagtggagacccctcactgtgccatgtgcctttat
aatgagaaagatgttagagccaggatgaagagaggctatgacaaccccaacttcatcttg
tcagaagtcaatgaaacagatgacaccaaaatgtaa

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_5|170_aa
MKDLVCDAEELGQCPEGGENRGYCVSRPLGPADVGYKAHPRQGALLLLTCPLALGGVRDF
TLELPTQDRNQTPFSDLQSPEADTRIGQEQFKTFAGGRSWEVSRAVSCSERAPGWAVPGN
EDGGMLNASKKSPSEKTPAFAEGQLYGMEQRVTEAAGSAPSGSRAFPEST

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_5|513_bp
atgaaggacctagtatgtgatgctgaggaacttgggcagtgtccggaaggtggtgagaac
cggggctattgcgtctccaggccccttggtccagctgatgtgggttacaaggcccacccg
cgccagggggcgctgctgctgctgacctgccctctggcactgggaggtgtgagggacttc
accctggagctgccaacccaggatcgtaaccaaacaccgttctcagacctgcagagccca
gaggcagacacgaggattggtcaagagcagttcaagacatttgctggaggacgcagctgg
gaagtctcccgggcagtgtcctgttctgagagggctcctgggtgggctgtgcccggtaat
gaggatgggggcatgctaaatgccagcaagaagagccccagtgagaagactccagcattt
gctgaagggcagctctatggcatggaacaaagggtcaccgaagctgctggctctgctccc
tctggctccagggctttcccagaaagcacttga

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_6|272_aa
MCLPQVDRVERPVDSIALSWEQNLPGLCTFNPAGSQLSAVRRKAFTLQFPGDCSQDAWVS
TTDSSAEGLLRGNFPPEKHRNETAMSPSHTGKGSSLREVELLDKRAEALLVMSTSHEDQA
GSGAWGHQKGEGACPGSCLSYGFHELKNTLWSSSVLKAGRVSSHRRPAAAARRGEIVRGE
QRARGQLAWVLSLDLLPLQLADQAPGPSLHGGNQSRRAGDAAPRLWLPRLPKGIPPSAPS
LSGNGEMLPTVRLAHRGATEQPRRGSEPRFLP

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_6|819_bp
atgtgtctcccccaggtagaccgcgtggagcgcccagtggactcgatagcgctgtcctgg
gaacagaaccttcccggactgtgcacttttaaccctgcaggttctcagctgtctgccgtc
agaaggaaagcattcacactccagttcccaggagactgcagccaggacgcttgggtttcc
accacggattcctctgctgaggggctgctccgcggtaactttcctcccgagaagcacagg
aatgaaacggcgatgagcccctctcacacagggaagggctccagcctgcgggaggtggag
ctgctggataaaagagctgaggcccttctggtgatgtccaccagccacgaggatcaggcg
gggtcaggggcctggggacaccagaaaggggagggtgcctgccctggcagctgcctttcc
tacggcttccacgaattaaagaacacactctggtcatcatctgtcctcaaggcagggcgc
gtttccagccatcgccgcccagccgccgccgcacgccggggagagatcgtccggggtgag
cagcgagcccggggacagctagcctgggtcctgtccctggacctactccccctgcagctg
gcggatcaggcccccggaccctcactccacggcgggaatcagagccgtcgggcgggggat
gcagcgcccagactgtggctcccccgccttcccaaaggaatccccccatctgctccatcc
ctctcgggaaacggcgaaatgctgccaaccgtccgcttagcgcaccgcggagcgactgag
cagccccgccgaggctccgagccaagatttctgccctaa

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_7|210_aa
MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTAGQDVHAIVTRTCES
VLSSAVYTHGCGCVSGEGIVEGTAEVCEMSGMRPQRSLIAKLLSTLRKGAAGKADEASQD
SGIVDTETPTVKFYVIQTLGDLAIGLPGGPGFWLHNKGGWLVLNGATEENKNKTQKDSFV
ADDYLNSYLMTDPHLETLPALNDLSIAHTQ

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_7|633_bp
atgttgacgcggctggtcctcagtgcacacctgagtagcacgacctctccgccctggacg
cacgctgccatcagctgggagctggacaacgtgctgatgcctagtcccagaatctggccc
caggtgactccaacagctgggcaggatgtgcatgccatagtaaccagaacctgtgagtct
gtgctgagctctgccgtctacacccacggctgtggctgtgtgagcggtgagggcatcgtg
gaagggactgcagaggtgtgcgagatgagtggaatgaggccccagcgttctctgattgcc
aagctgttaagcactctgcggaagggagctgctgggaaggcggacgaggcatctcaggat
tctggcattgtagacacagaaacaccgactgtgaagttttatgtaatacaaacactggga
gatttagcaataggcctgccaggcggccctggcttctggctgcacaacaaaggggggtgg
ctggtgctgaatggggcaacagaagaaaataaaaacaaaacacagaaagattccttcgtg
gctgacgactatcttaacagttatctgatgacagatccgcacttggaaacactgccagcc
ctcaatgacctgtctatagctcatacacagtga

>gi568815587r:128739128_128940265|GENSCAN_predicted_peptide_8|615_aa
MAGDSRNAMNQDMEIGVTPWDPKKIPKQARDYVPIATDRTRLLAEGKKPRQRYMEKSGKC
NVHHGNVQETYRYLSDLFTTLVDLKWRFNLLVFTMVYTVTWLFFGFIWWLIAYIRGDLDH
VGDQEWIPCVENLSGFVSAFLFSIETETTIGYGFRVITEKCPEGIILLLVQAILGSIVNA
FMVGCMFVKISQPKKRAETLMFSNNAVISMRDEKLCLMFRVGDLRNSHIVEASIRAKLIK
SRQTKEGEFIPLNQTDINVGFDTGDDRLFLVSPLIISHEINQKSPFWEMSQAQLHQEEFE
VVVILEGMVEATGMTCQARSSYMDTEVLWGHRFTPVLTLEKGFYEVDYNTFHDTYETNTP
SCCAKELAEMKREGRLLQYLPSPPLLGGCAEAGLDAEAEQNEEDEPKGLDDPLTPFTADI
RSLLVELLSEFGKCECDLENAGCRREDPVFMASRGISPQQSDDAATQVPMETKLGQEEQK
APQARGFVTPAHLGPAPQTLRVSFWGEKCGPPGRLLAQAWPVSASGAMRCLCWDECMAPA
SLPPPQSPQASECVIFIIGHRKRLLGKPRIPRRRRAGLPLGTIDQGCQFPALSNALNWGQ
SACSSEDPDAVTGSX

>gi568815587r:128739128_128940265|GENSCAN_predicted_CDS_8|1845_bp
atggctggcgattctaggaatgccatgaaccaggacatggagattggagtcactccctgg
gaccccaagaagattccaaaacaggcccgcgattatgtccccattgccacagaccgtacg
cgcctgctggccgagggcaagaagccacgccagcgctacatggagaagagtggcaagtgc
aacgtgcaccacggcaacgtccaggagacctaccggtacctgagtgacctcttcaccacc
ctggtggacctcaagtggcgcttcaacttgctcgtcttcaccatggtttacactgtcacc
tggctgttcttcggcttcatttggtggctcattgcttatatccggggtgacctggaccat
gttggcgaccaagagtggattccttgtgttgaaaacctcagtggcttcgtgtccgctttc
ctgttctccattgagaccgaaacaaccattgggtatggcttccgagtcatcacagagaag
tgtccagaggggattatactcctcttggtccaggccatcctgggctccatcgtcaatgcc
ttcatggtggggtgcatgtttgtcaagatcagccagcccaagaagagagcggagaccctc
atgttttccaacaacgcagtcatctccatgcgggacgagaagctgtgcctcatgttccgg
gtgggcgacctccgcaactcccacatcgtggaggcctccatccgggccaagctcatcaag
tcccggcagaccaaagagggggagttcatccccctgaaccagacagacatcaacgtgggc
tttgacacgggcgacgaccgcctcttccttgtgtctcctctgatcatctcccatgagatc
aaccagaagagccctttctgggagatgtctcaggctcagctgcatcaggaagagtttgaa
gttgtggtcattctagaagggatggtggaagccacaggcatgacctgccaagcccggagc
tcctacatggatacagaggtgctctggggccaccgattcacaccagtcctcaccttggaa
aagggcttctatgaggtggactacaacaccttccatgatacctatgagaccaacacaccc
agctgctgtgccaaggagctggcagaaatgaagagggaaggccggctcctccagtacctc
cccagccccccactgctggggggctgtgctgaggcagggctggatgcagaggctgagcag
aatgaagaagatgagcccaaggggctggatgaccccttaacacccttcactgctgacatc
cggagcctccttgtggagctgttgtcagagtttggaaagtgtgagtgtgacctagagaac
gctgggtgcagacgtgaagatccagtattcatggcatccaggggcatttcacctcagcaa
agtgatgacgctgccactcaggttcccatggaaaccaaactgggacaggaggaacaaaag
gctcctcaagctcggggctttgtcaccccagcacacctgggccctgcacctcagacgctg
cgtgtgagcttctggggagagaagtgtgggcctccagggagactcctggcccaggcctgg
cctgtgtctgcttccggagccatgcgctgcctgtgctgggatgaatgcatggcccctgca
tccttaccccctcctcagagcccacaagcttccgagtgcgtcatcttcattattggccac
aggaaacgacttcttggaaaacccaggattccgaggaggaggagggctggccttcctctt
gggactattgatcagggctgtcagttcccagctctgtccaatgctctgaactggggacag
tccgcatgcagctctgaggacccagatgctgtcactgggtcctgn