GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:06:15

Sequence gi568815587r:76087068_76306407 : 219340 bp : 50.59% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -     62     57    6                               1.05
 1.01 Sngl -   6392   6132  261  2  0   86   44   153 0.396   5.86
 1.00 Prom -  14643  14604   40                               0.24

 2.00 Prom +  20195  20234   40                              -4.26
 2.01 Init +  41445  41468   24  2  0   66  119    11 0.432   1.60
 2.02 Intr +  43901  43961   61  1  1   90   69    25 0.244  -0.89
 2.03 Intr +  51272  51372  101  0  2  127   81    97 0.931  12.73
 2.04 Term +  53684  54346  663  1  0   50   45   510 0.863  36.77
 2.05 PlyA +  55563  55568    6                               1.05

 3.00 Prom +  62281  62320   40                              -5.36
 3.01 Init +  65309  65367   59  1  2  101  114    13 0.600   6.09
 3.02 Intr +  75620  75636   17  2  2  110  105    -3 0.027  -1.21
 3.03 Term +  85581  86152  572  1  2   93   39   182 0.608   8.40
 3.04 PlyA +  86232  86237    6                              -0.45

 4.13 PlyA -  86324  86319    6                               1.05
 4.12 Term -  91826  91693  134  0  2   41   53    86 0.122  -1.35
 4.11 Intr -  92124  91919  206  2  2   63   47   124 0.171   4.64
 4.10 Intr - 100172 100002  171  1  0   72   61   255 0.414  20.26
 4.09 Intr - 104789 104497  293  2  2  131   94   460 0.998  46.83
 4.08 Intr - 107777 107500  278  0  2  100   91   349 0.971  33.64
 4.07 Intr - 109651 109416  236  0  2   64   75   361 0.762  29.73
 4.06 Intr - 119431 119258  174  0  0   99   68   183 0.287  16.45
 4.05 Intr - 121300 121125  176  1  2   84   -2    92 0.362  -1.46
 4.04 Intr - 122211 122074  138  0  0   77   71   107 0.650   8.56
 4.03 Intr - 122507 122361  147  2  0   83   37    77 0.676   2.53
 4.02 Intr - 127998 127921   78  0  0   95   19    68 0.132   0.35
 4.01 Init - 131735 131688   48  2  0   41  111    50 0.559   1.89
 4.00 Prom - 138576 138537   40                              -1.56

 5.03 PlyA - 139030 139025    6                              -0.45
 5.02 Term - 141443 141272  172  1  1   90   43   115 0.694   4.50
 5.01 Init - 143153 143032  122  2  2   91   94    42 0.942   4.77
 5.00 Prom - 144176 144137   40                              -8.16

 6.00 Prom + 145472 145511   40                              -4.36
 6.01 Init + 159331 159388   58  0  1   67   60   121 0.723   6.76
 6.02 Intr + 159522 159650  129  1  0   83   27    89 0.365   2.97
 6.03 Intr + 166834 166915   82  2  1  123   68    51 0.252   5.30
 6.04 Intr + 181801 181856   56  1  2   53  111    49 0.250   2.32
 6.05 Intr + 184177 184351  175  2  1   75  107   124 0.386  12.00
 6.06 Intr + 184407 184558  152  0  2   21   67   141 0.666   5.11
 6.07 Intr + 196210 196231   22  2  1  101  100    16 0.125   0.70
 6.08 Intr + 200192 200243   52  2  1  103   62    67 0.428   4.51
 6.09 Intr + 201322 201739  418  0  1   82   72    86 0.278  -0.00
 6.10 Term + 202361 202407   47  0  2  137   48    62 0.727   4.47
 6.11 PlyA + 202576 202581    6                               1.05

 7.04 PlyA - 203854 203849    6                               1.05
 7.03 Term - 210717 210554  164  1  2  100   42   105 0.517   5.20
 7.02 Intr - 218468 218341  128  1  2   94   87   -25 0.239  -1.68
 7.01 Init - 219237 219014  224  0  2   86   94    60 0.361   2.77

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_1|86_aa
MAILPKVIYRFNAIPIKLPMTFFTELDKTTLKFIWNQKRARIVKTILSEKNKAGGITLPD
SKLHYKATVTKTAWYWYQNSMVLVPK

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_1|261_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggacaaaactactttaaagttcatatggaaccaaaaaagagcc
cgcattgtcaagacaatcctgagcgaaaagaacaaagctggaggcatcacgctacctgac
tccaaactacactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagc
atggtactggtaccaaaatag

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_2|282_aa
MVFAHQKLHKQFIIPKYQVLSRYSEGSPGHSRALCGQLIFHGAQNIIDSRENGRSLHIVV
GKRQSSIFGGADVGFSGGIPSPDKGHRKRASSENERLQYKTPPPSYNSALAQPVTTVPSM
GETERKITSLSSSLDTSLDFSKENKKKGEDLVGSLNGGHANVHPSQEQGEALSGHRATVN
GTLLPSEQAGSASVQLPGEFHPVSEAELCCTVEQAEEIIGLEATGFASGDQLEAFNCIPV
DSAVAVECDEQVLGEFEEFSRRIYALNENVSSFRRPRRSSDK

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_2|849_bp
atggtctttgcccatcaaaagctgcataaacagtttattattcccaagtatcaagtgttg
tccagatactccgaggggtccccaggacactcgagggctctgtgtgggcagctcatcttc
cacggggctcagaacattattgacagtcgggaaaatggtcgttcccttcacattgtagtt
ggcaagagacaaagctccatatttgggggtgcagatgtaggcttctctggggggatccct
tcaccagacaaaggacatcgaaaacgggccagctctgagaatgagagacttcagtacaaa
acccctcctcccagttacaactcagcattagcccagcctgtgaccaccgtcccctccatg
ggagagaccgagagaaagataacatctctatcctcctccttggatacctccttggacttc
tccaaagaaaacaagaaaaaaggagaggatctagttggcagcttaaacggaggccacgcg
aatgtgcaccctagccaagaacaaggagaagccctctccgggcaccgggccacagtcaat
ggcactctcctacccagcgagcaggccgggtccgccagtgtccagcttccaggcgagttc
cacccagtctcagaagctgagctctgctgtactgtggagcaagcagaagaaatcatcggg
ctggaagccacaggtttcgcctcaggtgatcagctagaagcatttaactgcatcccagtg
gacagtgctgtggcagtagagtgtgacgaacaagttctgggagaatttgaagagttctcc
cgaaggatctatgcactgaatgaaaacgtatccagcttccgccggccgcgcaggagttcc
gataagtga

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_3|215_aa
MEWRFGETTGDQERSQASLGPSTRPGKARLPWCLSPAFGALGWAASIQSQEPQAHRSAGP
GNRSPTEVMWNPSVPPSLCVRVIYGQMLREEAEENKPCQLPTCHRSGERERAELLHDLQQ
APSFSGPLLPLKSGSESQPQITDLPEGSSEKLAVKPLAQSLAQNRLHPCSKPAVAPTLPQ
SDPRPSLTSSPAPMALGFTRAAICIARSSWTTEID

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_3|648_bp
atggagtggcgctttggggaaaccacgggcgaccaggaaagatctcaggcaagcctcggc
ccctccaccaggcctgggaaagcacgactcccctggtgtctgagcccggcatttggagcc
ctgggctgggcagccagcatccagagccaagaaccacaggctcaccggagtgcagggcct
gggaaccgctcacccacggaggtgatgtggaatccgtccgtgcccccctcgttgtgtgtc
agagtgatttatgggcagatgctgagagaagaggctgaggaaaataagccttgccagctg
ccaacctgtcacagatcgggagagagggaaagggccgagctgcttcatgacctccagcag
gctccttccttctctgggcctcttctgcctctgaaatcggggtctgaaagccagccccaa
atcacagacttgccagaaggatcaagtgagaagttggccgtcaagcccctagcgcagagc
ctggcacaaaacaggttgcacccctgctccaaacctgcagtggctcccacgctccctcag
tctgaccctcgtccctcactgacatcatctccggcccccatggctctggggtttacaaga
gccgccatctgcattgcgaggtcttcctggaccactgaaatagactag

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_4|692_aa
MAVNLSLALLTLHPEQKGLSKSTLVVEAVRFSLIVTNEKWEMVTLKPSLGVPGWRGQLRE
LRGGRLRDPPVPTLRAARTIGPGARCPWGVGPQAAASRARCRQGSSDQLRGGDRSLSKGA
TPGAAHYAPGPKQGAGQAPLCWALAAGLCGGKKLYDPGFSSPSCGFCRQAPENSGASHLC
VLTTHAQERATQVASRRRAGPAAAVQAEDFGAAPPGCDPGRARRATMRARPQVCEALLFA
LALQTGVCYGIKWLALSKTPSALALNQTQHCKQLEGLVSAQVQLCRSNLELMHTVVHAAR
EVMKACRRAFADMRWNCSSIELAPNYLLDLERGTRESAFVYALSAAAISHAIARACTSGD
LPGCSCGPVPGEPPGPGNRWGGCADNLSYGLLMGAKFSDAPMKVKKTGSQANKLMRLHNS
EVGRQALRASLEMKCKCHGVSGSCSIRTCWKGLQELQDVAADLKTRYLSATKVVHRPMGT
RKHLVPKDLDIRPVKDSELVYLQSSPDFCMKNEKVGSHGTQDRQCNKTSNGSDSCDLMCC
GRGYNPYTDRVVERCHCKYHWCCYVTCRRCERTVERYVCNTLPVPRVVLGLQMLVDQGLR
GHHLFLLSPKNPTQAWSTDTAEAQGSKGPYQRGWWTPRPEAGAQVQALDKGTGTRSLLLM
GAGSQWFRLQRPAEMPGPVLKAFLPSHDIHVS

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_4|2079_bp
atggctgtcaacctctctctggctctcctcactcttcacccagagcagaaaggcctttct
aaaagcaccctggtggtggaagcagtacgctttagtctcattgtaaccaatgagaaatgg
gaaatggtaaccttgaagccgtcgctcggcgtccctggttggcggggtcagctccgtgag
ctgcgtggcgggaggcttcgggacccgcccgtgccgaccttgcgcgccgcgcggacaatc
ggccccggtgcacggtgcccgtggggcgtcgggccccaggcggccgcctcccgggcccgc
tgcaggcagggtagctcggaccaacttcgaggaggtgaccgctcgctctccaaaggtgct
acgcctggcgcggcccactacgcgcccggccccaagcaaggggccgggcaggcgcccctg
tgctgggcgctagctgcggggctctgcggaggaaaaaaactgtacgatccaggcttctcc
tcgccttcctgtgggttttgccgacaggctccagaaaacagtggggcttcccatctctgc
gtgctgactacccacgcgcaggaacgcgccacgcaggtggcgtcgcggcggcgtgcagga
ccagcggcggccgtgcaggcggaggacttcggcgcggctcctcctgggtgtgaccccggg
cgcgcccgccgcgcgacgatgagggcgcggccgcaggtctgcgaggcgctgctcttcgcc
ctggcgctccagaccggcgtgtgctatggcatcaagtggctggcgctgtccaagacacca
tcggccctggcactgaaccagacgcaacactgcaagcagctggagggtctggtgtctgca
caggtgcagctgtgccgcagcaacctggagctcatgcacacggtggtgcacgccgcccgc
gaggtcatgaaggcctgtcgccgggcctttgccgacatgcgctggaactgctcctccatt
gagctcgcccccaactatttgcttgacctggagagagggacccgggagtcggccttcgtg
tatgcgctgtcggccgccgccatcagccacgccatcgcccgggcctgcacctccggcgac
ctgcccggctgctcctgcggccccgtcccaggtgagccacccgggcccgggaaccgctgg
ggaggatgtgcggacaacctcagctacgggctcctcatgggggccaagttttccgatgct
cctatgaaggtgaaaaaaacaggatcccaagccaataaactgatgcgtctacacaacagt
gaagtggggagacaggctctgcgcgcctctctggaaatgaagtgtaagtgccatggggtg
tctggctcctgctccatccgcacctgctggaaggggctgcaggagctgcaggatgtggct
gctgacctcaagacccgatacctgtcggccaccaaggtagtgcaccgacccatgggcacc
cgcaagcacctggtgcccaaggacctggatatccggcctgtgaaggactcggaactcgtc
tatctgcagagctcacctgacttctgcatgaagaatgagaaggtgggctcccacgggaca
caagacaggcagtgcaacaagacatccaacggaagcgacagctgcgaccttatgtgctgc
gggcgtggctacaacccctacacagaccgcgtggtcgagcggtgccactgtaagtaccac
tggtgctgctacgtcacctgccgcaggtgtgagcgtaccgtggagcgctatgtctgcaac
accctacccgtacctcgtgtggtcctgggactgcagatgctggtggaccagggcctgcga
ggacaccatctgttcctgctgtcccccaaaaacccgacccaggcctggtccacagacaca
gcagaagcccaaggcagcaagggcccataccagaggggctggtggacccccaggcccgag
gctggggctcaggtccaggctctagacaagggaactgggacaagaagcctgctcctgatg
ggtgctggctcccagtggttccgacttcagaggcccgcagagatgcctggccctgtgctg
aaggccttcctgccctctcacgacatccatgtttcctga

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_5|97_aa
MTPSSGLEIRGRSESDTTAQNRKLGAPSVPMSDRDGGVGPRPCEWWTSKTFGQQSKVLHW
AISLPPACPVPGSILALEIWAQACRWRHHLPLVLTEL

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_5|294_bp
atgaccccttcctcaggcctggagatcagaggaagatcagaaagtgacaccacagctcag
aacaggaagctaggtgctccctcagtgcccatgagtgacagagatggtggtgtgggtccg
agaccctgcgagtggtggacgtcgaagacctttggacaacagagcaaggtgctccactgg
gctatcagtctgccccctgcctgcccagtgcctggctccatcctggctctggagatctgg
gcccaggcttgtcgatggaggcaccatctgcccctggtgcttacagagctctag

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_6|396_aa
MAGPQALLLLCQALSGSPPAQCPPPHRDLLPESGDISRPPGAWWLLSVGADIFMPYMGKP
VGGPTLQQYDLNLTSYSCKDPISMYGQIHRDLRTKDEANLTPILRELSGVQSQVTHSAFL
PANIEEASSTHQALSEAPIKTDTGLPHEEQAEKEDKHERTSADLQSRESDSRLQAAQKQN
SRPKGAREKNQASCVLAVVGERMEGEGLDHYDDDDDEGLLPPKGRAISMVAICEAMTVSH
QVRTAPVKWAMVSESSMHHPPRPSWSELCPRLPDHTVSPSTGSVQVLLPIQPCTKERGRS
RVFFDSTDLQRHLLCARTSAGHRGTKSACPSTAYGSASLDTVIPHPGLHSDSATLKAIWP
QQMPGPRPQVQREQGYGRSRGMNLSTPHENLSTVTM

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_6|1191_bp
atggctggcccccaagctctgctgctgctctgccaggcgctgtcgggcagtcccccagct
cagtgtcctcctccacatagggatctgctcccagagtctggggatatctcccgcccccct
ggtgcctggtggctgctgtcagtaggggcagacatcttcatgccctacatgggaaagcca
gtgggggggcccaccctacagcagtatgacctcaacttaactagttatagctgcaaagac
cccatttccatgtatggccaaattcacagggacttaaggaccaaggatgaagccaacctg
actcctattctcagggagctgtcaggagttcaatcacaggtcactcattcagcctttctt
ccagcaaacattgaggaagcctcttctacacaccaggcactgagcgaggcaccgatcaag
acagacacaggcttgccccatgaggagcaagcagaaaaggaggacaagcacgaaaggaca
agtgctgacctgcagtcacgggaatcggactcccggctccaagctgcccagaaacagaac
tccaggcccaaaggcgcccgtgagaagaatcaggcttcttgtgtgttggctgtagtggga
gaaagaatggaaggagagggtctagaccactatgatgatgatgacgatgaagggctgctg
cccccaaaaggaagagccatctccatggtggccatctgtgaggctatgaccgtctcccac
caggttagaactgctccggtgaaatgggccatggtctcggagtcgtctatgcaccacccc
ccacgacccagctggtcagagctgtgcccccgcctccccgaccacacagtcagcccatcc
acaggctccgtccaagtcctcctgcctatccagccctgcacaaaggagcggggcaggagc
agggtgttctttgattccacagacctccagcgacatctcctctgtgccaggacctcagct
ggccacaggggaaccaagtcagcatgccctagcactgcctatggctctgccagcctggac
actgtcatcccacatccgggtttgcattctgactcggccactctcaaggccatttggccc
cagcaaatgcctggacctaggccccaggtgcagagagaacagggctacgggaggagcaga
ggaatgaacttgtctacacctcatgaaaacctctccacggtgacgatgtga

>gi568815587r:76087068_76306407|GENSCAN_predicted_peptide_7|171_aa
MKVRKTEEGVRGGPRLSTAAGLGPNLQPSINLTVLPTSAAAQTLHFGILAAICRIGSFCQ
AHMALGPERPPRGWRAPEAGLTSSTTGMADPRWDLAPAQTLKPPQASSSSDWPFSFFGHE
PRLREVKRLEEQGSPGDEKEEEKEMTQDRLFWGPPPSRLQGEAFVPKKLYP

>gi568815587r:76087068_76306407|GENSCAN_predicted_CDS_7|516_bp
atgaaggtgaggaagacagaggagggtgtcaggggtggtcccaggctgagcacggcagcg
gggctgggccccaacctgcaaccatccatcaatctgactgtgctgcccacttccgctgct
gcccagacactccactttgggatcctggctgccatctgtaggattggcagcttctgccag
gctcacatggctctgggcccagagaggccccccaggggttggagggccccagaggcaggt
cttacaagctccactacggggatggctgacccgaggtgggacttagcgccagctcagacc
cttaagcccccacaggcctcctcttcatctgattggcctttttctttctttggacacgaa
ccaagactcagagaggtgaagagactggaagaacaaggtagccctggggacgagaaagag
gaggagaaagaaatgacccaggacaggctgttctggggaccacccccatcccgactacag
ggggaggcttttgtacccaagaaattgtatccgtga