GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:22:33

Sequence gi568815588r:118494135_118695244 : 201110 bp : 43.30% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 PlyA -    784    779    6                               1.05
 1.07 Term -   5373   5257  117  0  0   94   44    89 0.423   3.64
 1.06 Intr -  13699  13676   24  1  0   74   58    72 0.091   1.02
 1.05 Intr -  22684  22578  107  2  2   74   77    62 0.158   3.63
 1.04 Intr -  48592  48538   55  1  1   93   92    65 0.561   5.95
 1.03 Intr -  49807  49675  133  0  1   51   81    71 0.578   3.35
 1.02 Intr -  50400  50287  114  2  0   93   37    60 0.455   0.96
 1.01 Init -  56519  56431   89  2  2   80   55    63 0.659   2.31
 1.00 Prom -  61168  61129   40                              -5.56

 2.00 Prom +  62056  62095   40                              -3.66
 2.01 Init +  78287  78343   57  1  0   78   68    51 0.671   3.41
 2.02 Intr +  85959  86078  120  2  0   49   84   113 0.679   7.69
 2.03 Term +  96310  96540  231  0  0   70   40   114 0.393   1.27
 2.04 PlyA +  96563  96568    6                               1.05

 3.02 PlyA -  99284  99279    6                               1.05
 3.01 Sngl - 101110  99998 1113  1  0  103   44  2294 0.998 222.52
 3.00 Prom - 108895 108856   40                              -4.46

 4.00 Prom + 116301 116340   40                              -3.46
 4.01 Init + 135611 135655   45  1  0   72   98    40 0.534   4.16
 4.02 Intr + 144647 144758  112  1  1   79   88   106 0.997   9.65
 4.03 Intr + 144916 145081  166  2  1   60   27   117 0.480   1.82
 4.04 Intr + 145759 145906  148  1  1   65   63    67 0.497   2.14
 4.05 Term + 149657 150064  408  1  0   52   33   349 0.639  21.02
 4.06 PlyA + 152646 152651    6                               1.05

 5.02 PlyA - 153930 153925    6                               1.05
 5.01 Sngl - 154912 154457  456  1  0   70   41   196 0.969   9.32
 5.00 Prom - 155331 155292   40                              -6.96

 6.02 PlyA - 155388 155383    6                               1.05
 6.01 Sngl - 157267 156821  447  1  0   79   48   224 0.984  13.73
 6.00 Prom - 160270 160231   40                              -4.66

 7.05 PlyA - 160348 160343    6                               1.05
 7.04 Term - 160963 160579  385  0  1   67   41   172 0.623   4.76
 7.03 Intr - 164031 163881  151  1  1   78   88   113 0.547   9.52
 7.02 Intr - 176916 176808  109  0  1   62   61    63 0.004   0.86
 7.01 Init - 183975 183931   45  0  0   83   95    28 0.019   3.68
 7.00 Prom - 190035 189996   40                              -3.76

 8.03 PlyA - 190134 190129    6                               1.05
 8.02 Term - 194222 194150   73  1  1   83   43    86 0.373   0.98
 8.01 Init - 196639 196599   41  1  2  114   80     3 0.335   1.76

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  28081  27989   93  1  0   74  105    27 0.829   3.16
S.002 Intr + 175948 176061  114  0  0   95   35    96 0.914   5.64


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_1|212_aa
MGYNVHRELCFPPIWMETPEALQSPAEKQRLLWNTLPASILMNQKARACGSHQSCVFFWY
MPDVPDGLRRCISYVLATEVTPVPHFNPDMTQFGQENAWWAEFGFLLKGGYLQEASPGGP
EKMAIRKPDTAYSFVWVGLKSEVPNPQATDGYRGLATFDLRTIHMKQGNYVDFKPKHPSK
HYTDMKRNKRHEWSYSHHIPCDVLSIEGTSYT

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_1|639_bp
atggggtacaatgtccacagggagctctgctttccaccaatatggatggaaacaccagaa
gctctgcagagcccagcagagaaacagaggctcctctggaacacactacctgcttccatc
ctcatgaaccagaaagcacgtgcctgtggcagtcaccagtcatgtgtcttcttttggtac
atgcctgatgttccagatggtctaaggaggtgcataagctacgttttagcaaccgaggtg
acccctgtcccccacttcaatccagacatgacccagtttgggcaggaaaatgcctggtgg
gcagagtttggctttttactcaaaggaggctacctgcaagaggcttcaccgggggggcca
gagaagatggccatcaggaagcccgacacagcgtattcttttgtatgggtgggccttaag
tcagaggttcctaacccccaggccacagatgggtaccggggcttggcgacctttgactta
aggaccatccatatgaagcaaggcaactacgtggacttcaagccaaagcatccaagtaag
cactacacagacatgaaaagaaataagaggcacgagtggtcctacagccaccacattcca
tgtgatgtgctaagtattgaaggcacttcctacacgtag

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_2|135_aa
MTAPLQPQTTGTNTVANTHNNSQQSNAEISLIAVKYKAVSAPLGFCSISYEHPGVSLFTV
AVGACIETLFCQFNEINLLIGCQKCDLVTKLAKRITEPPISLEKGCCQVPSWLSSQPDCL
YYSLQEEDCVYILDA

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_2|408_bp
atgactgctccactccagccacagaccacaggaacgaacactgtggccaacacccacaat
aacagtcaacaatcaaatgcagaaatcagccttattgctgtgaagtacaaggctgtgtct
gctcctcttgggttctgttccatcagctacgagcatccaggagttagcctgttcaccgta
gctgttggagcatgcattgaaacactcttctgccagtttaatgagataaatctattgatt
ggctgccaaaagtgtgacctggtgacaaagcttgcaaagaggattacagaacctcccatc
agccttgagaagggctgctgccaagtaccaagttggctcagttcccagcctgactgcctg
tattactccttgcaggaagaggactgtgtatacatcttagatgcttga

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_3|370_aa
MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLK
GLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLAY
AFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRRISLRLSAYAV
LAIWALSAVLALPAAVHTYHVELKPHDVRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLV
ILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVIVVVFAVCWLPLHVFNLL
RDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPH
GQNMTVSVVI

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_3|1113_bp
atggcctcatcgaccactcggggccccagggtttctgacttattttctgggctgccgccg
gcggtcacaactcccgccaaccagagcgcagaggcctcggcgggcaacgggtcggtggct
ggcgcggacgctccagccgtcacgcccttccagagcctgcagctggtgcatcagctgaag
gggctgatcgtgctgctctacagcgtcgtggtggtcgtggggctggtgggcaactgcctg
ctggtgctggtgatcgcgcgggtgcgccggctgcacaacgtgacgaacttcctcatcggc
aacctggccttgtccgacgtgctcatgtgcaccgcctgcgtgccgctcacgctggcctat
gccttcgagccacgcggctgggtgttcggcggcggcctgtgccacctggtcttcttcctg
cagccggtcaccgtctatgtgtcggtgttcacgctcaccaccatcgcagtggaccgctac
gtcgtgctggtgcacccgctgaggcggcgcatctcgctgcgcctcagcgcctacgctgtg
ctggccatctgggcgctgtccgcggtgctggcgctgcccgccgccgtgcacacctatcac
gtggagctcaagccgcacgacgtgcgcctctgcgaggagttctggggctcccaggagcgc
cagcgccagctctacgcctgggggctgctgctggtcacctacctgctccctctgctggtc
atcctcctgtcttacgtccgggtgtcagtgaagctccgcaaccgcgtggtgccgggctgc
gtgacccagagccaggccgactgggaccgcgctcggcgccggcgcaccttctgcttgctg
gtggtgatcgtggtggtgttcgccgtctgctggctgccgctgcacgtcttcaacctgctg
cgggacctcgacccccacgccatcgacccttacgcctttgggctggtgcagctgctctgc
cactggctcgccatgagttcggcctgctacaaccccttcatctacgcctggctgcacgac
agcttccgcgaggagctgcgcaaactgttggtcgcttggccccgcaagatagccccccat
ggccagaatatgaccgtcagcgtggtcatctga

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_4|292_aa
MMPELRAAMQMGSGQKNVASETQAGLQQDRFSPSLNVQVALGVAAIGSFLGRVLSEIEKS
HFQLEDEKGTAPITRAVDKNQPHAEAGLLSCSDHVLSQSWCLYLALAGRVECQRPQRAKV
EASHWSGNVQDLQLDTALVPPASDVLIGIREPAPDSHGNPHPQTSPDELLPKGKAVKTEE
ELEEDDDEELEETLSERLWGLTEMFPERVRSVAGATSDLFLFVAQKMYRFSRAALWTGTT
SFMILVLPLVFETEKLQMEQQQQLQQQQILLGPNTGLSGGMPGALPSLPGKI

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_4|879_bp
atgatgccagaacttagagctgccatgcagatgggcagtgggcagaaaaatgtagcctct
gagacacaagcaggtctgcagcaagaccgcttctctccctccctcaacgtgcaggttgct
ctcggagttgctgccatcggaagttttctaggcagagtcctttcagaaatagaaaaatcc
cacttccagttagaggacgagaaaggcacagctccaatcactagagctgttgacaaaaat
cagccacatgctgaggcaggtctgctgagctgttcagaccatgtgctttcacagtcctgg
tgcttgtacctggccctggctggaagggtagagtgtcaaagaccccaaagggcaaaggtg
gaggcatcccactggagtgggaacgtgcaggacctgcagctggacactgctctggtacca
cctgcatctgatgttttgattggtatcagggaacctgcccccgatagtcacgggaacccc
catccccagacgtccccggatgaattgctcccaaaaggcaaagccgtgaagactgaggag
gagctggaggaggatgacgatgaggagctagaggagaccctgtcagagagactatggggc
ctgacggagatgtttccggagagggtccggtccgtggctggagccacttctgatctcttc
ctctttgtggctcaaaaaatgtacaggttttccagggcagccttgtggactgggaccact
tcctttatgatcctggttcttccccttgtctttgagactgagaagttgcaaatggagcaa
cagcagcaactgcagcagcagcagatacttctagggcctaacacagggctctcaggagga
atgccaggggctctaccttcacttcctggaaagatctag

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_5|151_aa
MDKFLDTYTLPRLNQEEVQSLNRPITSSEIEAVINSLPIKNSPGPDGFTAEFYQRYKEEL
VPFLLKLFQTIEKQGLVPNSFYEASIILIPKPGREITKKENFRPISLMNIDAKILNKILA
NQIQQHIKKLIHHDQLGFIPGCKAGSTYANQ

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_5|456_bp
atggataaattcctggacacatacaccctcccaagactaaaccaggaagaagtccaatcc
ctgaatagaccaataacaagttctgaaattgaggcagtaattaatagcctaccaatcaaa
aacagcccaggaccagatggattcacagctgaattctaccagaggtacaaagaggagctg
gtaccattccttctgaaactattccaaacaatcgaaaaacagggactcgtccctaactca
ttttatgaggccagcatcatcctgataccaaaacctggcagagaaataacaaaaaaagaa
aatttcaggccaatatccctgatgaacattgatgcaaaaatcctcaataaaatactggca
aaccaaatccagcaacacatcaaaaagcttatccaccacgatcaacttggcttcatccct
ggatgcaaggctggttcaacatatgcaaatcaataa

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_6|148_aa
MRKNQHQKAENSKNQNTSSPKDHNSSPAREQIWIENEFDKLTEAGFRRLVITNSSEVKEH
VLTQCKEAKNLEKRLEELLTRITSLEKNINYLMELKNTAQELHKAYTSINSQIDKVEDRI
SEIEDQLNEIKCEDKIREKRMTRNEQSL

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_6|447_bp
atgaggaaaaaccagcaccaaaaggctgaaaattccaaaaaccagaacacctcttctcca
aaggatcacaactcctcaccagcaagggaacaaatctggatagagaatgagtttgacaaa
ttgacagaagcaggcttcagaaggttggtaataacaaactcctctgaggtaaaggagcat
gttctaacccaatgcaaggaagctaagaaccttgaaaaaaggttagaggaattgctaact
agaataactagtttagagaagaacataaattacttgatggagctgaaaaacacagcacaa
gaacttcataaagcatacacaagtatcaatagccaaatcgataaagtggaagacaggata
tcagagattgaagatcaacttaatgaaataaaatgtgaagacaagattagagaaaaaaga
atgacaaggaatgaacaaagcctctaa

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_7|229_aa
MAHKCEKMFSLISRQRTLTNTEPLIPDDPPAEKPRCPLTLTGIPGVLAQLQKPTQMRRNQ
KTNPGNTTKQGLSTPPKNHISSPAMDPNQEEIPDLPEKEFQSTGSPSHSNQTRERKGIQI
GKEEVKLFLFVDNMIIYLENPKDSSRKLLELIKEFSKVSGYKINVHKSVALLYTNSDRAE
NQIKNSTPFTIAAKQQQQQQQQQNHQNQNQKKLRNIPNKGVERPLQGKL

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_7|690_bp
atggcccataaatgtgaaaagatgttcagcctcattagtcgtcagagaaccctaactaat
acagagcccttgatccccgatgacccaccagcagagaaacccaggtgtcctcttacactg
actggcatcccgggggtccttgcccagctccaaaagcctacccaaatgagaaggaaccag
aaaaccaaccctggtaatacgacaaaacaaggcttgtcaacgccccctaaaaatcacatt
agttcaccagcaatggatccaaaccaagaagaaatccctgatttacctgaaaaagaattc
cagagtactggaagtcctagccacagcaatcagacaagagaaagaaagggcatccaaatt
ggtaaagaggaagtcaaactgttcctgtttgttgacaatatgatcatttaccttgaaaac
cctaaggactcctccagaaagctcctagaactgataaaagaattcagcaaagtttctgga
tacaagattaatgtacacaaatcagtagctcttctatacaccaacagcgaccgcgcggag
aatcaaatcaagaactcaaccccttttacaatagctgcaaaacaacaacaacaacaacaa
caacaacaaaaccaccaaaaccaaaaccaaaaaaaacttaggaatatacccaacaaagga
gtcgaaagacctctacaaggaaaactataa

>gi568815588r:118494135_118695244|GENSCAN_predicted_peptide_8|37_aa
MPGPYILKKGFPTGIFGECNCDDTSVNNNGRHSLGFG

>gi568815588r:118494135_118695244|GENSCAN_predicted_CDS_8|114_bp
atgcccggcccatacattttgaagaagggatttcccactggaatatttggtgaatgcaac
tgtgatgatactagtgtgaataacaacggaagacactcacttggctttggctag