GENSCAN 1.0	Date run:  7-Nov-116	Time: 22:42:36

Sequence gi568815588r:117032212_117238056 : 205845 bp : 44.25% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   1092   1307  216  2  0   55   42   180 0.821   5.27
 1.02 PlyA +   1323   1328    6                               1.05

 2.00 Prom +  18209  18248   40                              -3.56
 2.01 Sngl +  40630  41019  390  0  0   73   48   149 0.861   5.62
 2.02 PlyA +  42039  42044    6                               1.05

 3.04 PlyA -  42450  42445    6                               1.05
 3.03 Term -  46075  46015   61  0  1   59   43    72 0.452  -2.92
 3.02 Intr -  48578  47485 1094  2  2   15   53   352 0.052  13.21
 3.01 Init -  50440  49403 1038  1  0   44   41   365 0.056  21.40
 3.00 Prom -  50533  50494   40                              -4.96

 4.02 PlyA -  50702  50697    6                               1.05
 4.01 Sngl -  51954  50929 1026  0  0   88   43   555 0.998  48.09
 4.00 Prom -  53653  53614   40                              -3.36

 5.06 PlyA -  53886  53881    6                               1.05
 5.05 Term -  57404  57280  125  0  2   64   48    72 0.063  -0.65
 5.04 Intr -  73428  73280  149  2  2   61  106    74 0.323   6.38
 5.03 Intr -  77922  77810  113  0  2   86   74     9 0.198  -1.52
 5.02 Intr -  81062  81030   33  2  0  133  113     8 0.476   6.22
 5.01 Init -  86665  86630   36  1  0   66   75    39 0.404   0.41
 5.00 Prom -  87958  87919   40                              -8.06

 6.00 Prom +  91061  91100   40                              -0.86
 6.01 Init +  94602  94677   76  2  1   75   70    62 0.784   2.35
 6.02 Term +  96539  96657  119  0  2   95   49    40 0.310  -0.50
 6.03 PlyA +  99184  99189    6                               1.05

 7.04 PlyA - 101105 101100    6                               1.05
 7.03 Term - 102372 101797  576  0  0   78   34   666 0.993  54.67
 7.02 Intr - 104448 104261  188  1  2   67   80   347 0.710  31.21
 7.01 Init - 105824 105605  220  2  1   85   75   251 0.964  22.29
 7.00 Prom - 107381 107342   40                              -3.26

 8.00 Prom + 126399 126438   40                              -2.46
 8.01 Init + 131156 131270  115  1  1   51   18   122 0.119  -0.12
 8.02 Intr + 133485 133627  143  1  2  107  -14    89 0.102   0.67
 8.03 Intr + 142751 142877  127  1  1   73  102    66 0.397   6.75
 8.04 Intr + 143130 143254  125  1  2   82   41    32 0.369  -1.80
 8.05 Term + 143805 143936  132  2  0   16   32   174 0.456   2.69
 8.06 PlyA + 144234 144239    6                               1.05

 9.00 Prom + 146537 146576   40                              -3.76
 9.01 Init + 152203 152319  117  0  0   51   46   188 0.607   9.11
 9.02 Intr + 165302 165500  199  1  1   42   96   202 0.038  15.32
 9.03 Intr + 168948 169076  129  1  0   80  106    93 0.997  10.97
 9.04 Term + 177286 178088  803  2  2  107   49   653 0.993  56.71
 9.05 PlyA + 179330 179335    6                               1.05

10.00 Prom + 180501 180540   40                              -2.76
10.01 Init + 182272 182419  148  0  1   43   84    93 0.646   4.65
10.02 Intr + 184099 184279  181  2  1   49  115    65 0.341   4.23
10.03 Term + 196454 196484   31  2  1  122   43    42 0.032   0.43
10.04 PlyA + 197306 197311    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_1|71_aa
MREDPNKQNQNEKGDITTDTAEIQRIISGYYEQLHASKLENLEEMDKFLDTYNLPRLNHE
EIQNLNRPNNK

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_1|216_bp
atgagagaagatccaaataaacaaaatcagaatgaaaaaggagacattacaactgatact
gcagaaattcaaaggatcattagtggatactatgagcaactacatgccagtaaattggaa
aatctagaagaaatggacaaattcctagacacatacaatctaccaagactgaatcatgaa
gaaatccaaaacctgaacagaccaaataacaagtaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_2|129_aa
MDPNQEEIPDLLEKEFRRLVIKLIWEAPEKGKAQCKEIQKMIQEVKGEKFKEIDSINKKI
SKVQDTLDTLTEMQNALESLSNRIEQVKERNSELKDKVFELTQSNKDKEKRIRKYKGSKK
FGIMLNDQT

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_2|390_bp
atggatccaaaccaagaagaaatccctgatttacttgaaaaagaatttaggaggttagtt
attaagctaatctgggaggcaccagagaaaggcaaagcccaatgcaaggaaatccaaaaa
atgatacaagaagtgaagggagaaaaatttaaggaaatagatagcataaataaaaaaata
tcaaaagttcaggacacattggacacacttacagaaatgcaaaatgctctggaaagtctc
agcaatagaattgaacaagtaaaagaaagaaattcagagctcaaagacaaggtcttcgaa
ttaacccaatccaacaaagacaaagaaaaaagaataagaaaatacaaaggctccaagaaa
tttgggattatgttaaacgaccaaacctaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_3|730_aa
MGDFNTPLSTLDRSMRQKFNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS
KIDHILGSKALLSKCKRTEIITNYLSDHSAIKLELRIKNLTQNRSTTWKLNNLLLNDYWV
HNEMKAEIKMFFETNENKDTTYQNLWDAFKAVCRGKFIALNAHKRKQERSKIDTLTSQLK
ELEKQEQTHSKASRRQEITKIRAELKEIETQKTLQKINESRSWFFERINKIDRPLARLIK
KKREKNQIDAIKNDKGDVTTDPTEVQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLN
QEEVESLNRPITGSEIVAIINSLPPKKSPGPDGFTAEFYQRYKEELRIKYLGIQLTRDVK
DLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIKLPMTFFT
ELEKTTLKFIWNQKRARITKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQNRDIDQ
WNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPYTK
INSRWIKDLNVRPKTIKTLEENLGITIQDIGMGKDFMSKTPKAMATKDKIDKWDLIKLKS
FCTAKETTIRVNRQPTKWEKIFTTYSSDKGLISRIYNELKQIYKKKTNNPIKKWAKDMNR
HFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRWLTDGKRVF
DCALSSESYR

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_3|2193_bp
atgggagactttaacaccccactgtcaacattagacagatcaatgagacagaaattcaac
aaggatacccaggaattgaactcagctctgcaccaagcggacctaatagacatctacaga
actctccaccccaaatcaacagagtatacatttttttcagcaccacaccacacctattcc
aaaattgaccacatacttggaagtaaagctctcctcagcaaatgtaaaagaacagaaatt
ataacaaactatctctcagaccacagcgcaatcaaactagaactcaggattaagaatctc
actcaaaaccgctcaactacatggaaactgaacaacctgctcctgaatgactactgggta
cataacgaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacaca
acataccagaatctctgggacgcattcaaagcagtgtgtagagggaaatttatagcacta
aatgcccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaa
gaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaaa
atcagagcagaactgaaggaaatagagacacaaaaaacccttcaaaaaattaatgaatcc
aggagctggttttttgaaaggatcaacaaaattgatagacctctagcaagactaataaag
aaaaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatgtcaccacc
gatcccacagaagtacaaactaccatcagagaatactacaaacacctctacgcaaataaa
ctagaaaatctagaagaaatggataaattccttgacacatacactctcccaagactaaac
caggaagaagttgaatctctgaatagaccaataacaggatctgaaattgtggcaataatc
aatagcttaccacccaaaaagagtccaggaccagatggattcacagccgaattctaccag
aggtacaaggaggaactgagaataaaatacctaggaatccaacttacaagggatgtgaag
gacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaa
tggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactg
cccaaggtaatttacagattcaatgccatccccatcaagctaccaatgactttcttcaca
gaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatcaccaag
tcaatcctaagccaaaagaacaaagctggaggcatcacactgcctgacttcaaactatac
tacaaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagatcaa
tggaacagaacagagccctcagaaataacgccgcatatctacaactatctgatctttgac
aaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgggaa
aactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaa
atcaattcaagatggattaaagacttaaacgttagacctaaaaccataaaaaccctagaa
gaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatgtctaaaaca
ccaaaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaactaaagagc
ttctgcacagcaaaagaaactaccatcagagtgaacaggcaacctacaaaatgggagaaa
attttcacaacctactcatctgacaaagggctaatatccagaatctacaatgaactcaaa
caaatttacaagaaaaagacaaacaaccccatcaaaaagtgggcgaaggacatgaacaga
cacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaagtgctcatcatca
ctggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttaga
atggcaatcattaaaaagtcaggaaacaacagatggcttacagatgggaagcgtgtcttc
gattgtgctttgtcttcagagtcataccggtag

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_4|341_aa
MGKKQNRKTGNSKNKSASPPPKERSSSPATEQSWMENDFDELREEGFRRSNYSELWEDIQ
TKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEERVSA
MEDEMNEMNEMKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLTGVPESDGENGTKLENT
LQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKILRAAREK
GRVTLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISCPAKLSFISEGEIKYF
TDKQMLRDFVTTRTALKELLKEALNMERNNRYQPLQNHAKM

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_4|1026_bp
atggggaaaaaacagaacagaaaaactggaaactctaaaaataagagcgcctctcctcct
ccaaaggaacgcagctcctcaccagcaacggaacaaagctggatggagaatgactttgac
gagctgagagaagaaggcttcagaagatcaaattactctgagctatgggaggacattcaa
accaaaggcaaagaagttgaaaactttgaaaaaaatttagaagaatgtataactagaata
accaacacagagaagtgcttaaaggagctgatggagctgaaaaccaaggctcgagaacta
cgtgaagaatgcagaagcctcaggagccgatgcgatcaactggaagaaagggtatcagca
atggaagatgaaatgaatgaaatgaatgaaatgaagcgagaaggaaagtttagagaaaaa
agaataaaaagaaacgagcaaagcctccaagaaatatgggactatgtgaaaagaccaaat
ctacgtctgactggtgtacctgaaagtgatggggagaatggaaccaagttggaaaacact
ctgcaggatattatccaggagaacttccccaatctagcaaggcaggccaatgttcagatt
caggaaatacagagaacaccacaaagatactcctcgagaagagcaactccaagacacata
attgtcagattcaccaaagttgaaatgaaggaaaaaatattaagggcagccagagagaaa
ggtcgggttaccctcaaagggaagcccatcagactaacagcggatctctcggcagaaacc
ctacaagccagaagagagtgggggccaatattcaacattcttaaagaaaagaattttcaa
cccagaatttcatgtccagccaaactaagcttcataagtgaaggagaaataaaatacttt
acagacaagcaaatgctgagagattttgtcaccaccaggactgccctaaaagagctcctg
aaggaagcgctaaacatggaaaggaacaaccggtaccagccgctgcaaaatcatgccaaa
atgtaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_5|151_aa
MVVCCTDHRITQGKTEFVLASFKKEYGSEGYERCYREQKLVAVIILAILTLTTSRIQYKL
RKYTVIMVGLSLDYVCKTYSSKRVLCLLEIGVKKTRILVLALPNASCVTVEVLNLDVVQF
IFTFVACAFDALSKKIIAKSSVMKLLLYVVF

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_5|456_bp
atggtggtttgctgcactgatcatcgcatcacccagggcaaaaccgaatttgtgttagca
tctttcaagaaagaatacggttctgagggatatgagagatgttatagagaacagaaatta
gttgcagttatcatattagctattttgaccttaactaccagcagaatccagtacaaactc
agaaaatatactgtcatcatggttggtttatctttggactacgtttgtaaaacctacagt
agcaaacgggttctatgcttattagaaataggagtaaaaaagaccaggattctggtgctg
gctctgccaaatgccagctgtgtgactgtggaagttcttaatcttgatgtagttcagttt
atttttacttttgttgcctgtgcttttgacgccctatccaaaaaaatcattgccaaatcc
agcgtcatgaagcttttgctctatgttgtcttttaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_6|64_aa
MAQAPRLSRPWALLPSGLRPLPQFTELMSLQTEAFSSNQEGCASECFSANLKGSPPPFPK
LPGL

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_6|195_bp
atggcgcaggctccacgcctttcccgcccttgggccctcctgccttccgggctgaggcct
ctgccccaattcacagaactcatgtctcttcaaacagaagctttcagttccaaccaagaa
gggtgtgcatctgaatgcttttcagcaaacctgaagggctctcctcctcctttccccaaa
ctaccaggtctgtaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_7|327_aa
MDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNS
AADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVG
RERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRL
LSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAV
GGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELS
ARYLSSSAFEPYSRTNNKEGAEKKALD

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_7|984_bp
atggacgttcgatgccactcggacgccgaggctgcccgggtctcgaagaacgcgcacaag
gagagtcgggagagcaagggcgcggaggggaacctcccagccgccttcctcaaggagccg
cagggcgccttctcagcgtcgggcgctgctgaggattgtaacaaaagtaaatccaattcc
gcagcggacccggattactgccgccggatcctggtccgagatgccaaggggtccatccga
gagatcatcctgcccaagggcctggacttggaccggcctaagaggacgcgcacgtccttc
accgcggagcagctctatcggctggagatggagttccagcgctgccagtacgtggtgggc
cgcgagaggaccgagctcgcccggcagcttaacctctccgagacccaggtgaaggtctgg
ttccagaaccggcgcaccaagcagaagaaggaccagggcaaggactcggagctacgctcg
gtggtgtcggagaccgcggccacgtgcagcgtgctacggctgctggagcagggccgcctg
ttgtcgccgcccggcctgcctgcgctgctgccgccttgcgccacgggcgctctcggctca
gcgctgcgcgggcccagcttgccggccctgggcgcgggcgccgctgcaggctcggccgcc
gcagccgccgccgccgccccgggcccagcgggcgctgcatccccgcacccgccggctgtg
ggcggtgctccaggtcccgggcccgccgggccggggggattgcacgcaggcgccccggcc
gcgggccacagcctcttcagcctgccggtgccctcgctgctcggctccgtcgccagccgc
ctgtcctccgccccgttaacaatggctggttcgctagctgggaatttgcaagaactctcc
gcccgatatctgagctcctcggccttcgagccttactcccggaccaacaataaagaaggg
gccgagaaaaaagcgctggactga

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_8|213_aa
MQPRGPRLLPPVLSFLDAREASRSPLVAMLSGPRRGPARPSQWSKTNPVVAAFTKERQPG
RPHRRQRADREDRALFRMLRGEGAVGRTAFPPPPTSFMSWEEAKSSSIVGAPSGGSFRKR
SSPEDFAEDRSQPRKQIGSFRGAGTAPPPAFPLASGRDWSASWRPVGRGQWTGDNCYRFQ
REKLENLKLSISTNLRNMGGHRLDTTAPLRQLI

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_8|642_bp
atgcaaccgcgtgggccccgcctgctccccccggtcctgtctttcctcgacgctcgggag
gcgtcccgcagccccctagtcgcgatgctctcaggtccccggcgtggaccagcacggcca
agtcagtggtcaaaaaccaacccggtggtagctgcctttaccaaggaaagacagccagga
cgcccgcaccgacggcaacgcgcggacagagaggaccgtgccctctttcgcatgttacgg
ggcgagggggctgttggcagaacagcatttcccccgcccccgacttcctttatgagctgg
gaggaagcaaaatccagctctattgttggagctccctctggtggcagtttccgaaaacga
tccagccctgaggattttgcggaagatcggtctcagccccgcaagcagattggcagcttc
cggggtgctgggacggcgccccctcctgccttcccgctagcatctggcagggactggagt
gcttcctggagacccgtaggccggggacagtggactggggataattgctaccgctttcaa
cgagagaaactcgagaatctgaaactcagtatttctacgaatttgcgcaacatgggaggt
catcgcctggacaccactgcccccttgcggcaactcatctaa

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_9|415_aa
MFSSLLTALPLPLPLPLRVLVNSVVPAPASEVAALLENQARRCCPEALGKLFPGLCFLCF
LVTYALVGAVVFSAIEDGQVLVAADDGEFEKFLEELCRILNCSETVVEDRKQDLQGHLQK
VKPQWFNRTTHWSFLSSLFFCCTVFSTVGYGYIYPVTRLGKYLCMLYALFGIPLMFLVLT
DTGDILATILSTSYNRFRKFPFFTRPLLSKWCPKSLFKKKPDPKPADEAVPQIIISAEEL
PGPKLGTCPSRPSCSMELFERSHALEKQNTLQLPPQAMERSNSCPELVLGRLSYSIISNL
DEVGQQVERLDIPLPIIALIVFAYISCAAAILPFWETQLDFENAFYFCFVTLTTIGFGDT
VLEHPNFFLFFSIYIIVGMEIVFIAFKLVQNRLIDIYKNVMLFFAKGKFYHLVKK

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_9|1248_bp
atgttctccagcctcctgactgcgctgccgctgccgctgccgctaccgctgcgtgtcctc
gtaaactcagtggttccagcgccagcctctgaggtagcagctctcctggagaaccaggcc
aggagatgctgcccagaggccctgggaaagctcttccctggcctctgcttcctctgcttt
ctggtgacctacgccctggtgggtgctgtggtcttctctgccattgaggacggccaggtc
ctggtggcagcagatgatggagagtttgagaagttcttggaggagctctgcagaatcttg
aactgcagtgaaacagtggtggaagacagaaaacaggatctccaggggcatctgcagaag
gtgaagcctcagtggtttaacaggaccacacactggtccttcctgagctcgctctttttc
tgctgcacggtgttcagcaccgtgggctatggctacatctaccccgtcaccaggcttggc
aagtacttgtgcatgctctatgctctctttggtatccccctgatgttcctcgttctcacg
gacacaggcgacatcctggcaaccatcttatctacatcttataatcggttccgaaaattc
cctttctttacccgccccctcctctccaagtggtgccccaaatctctcttcaagaaaaaa
ccggaccccaagcccgcagatgaagctgtccctcagatcatcatcagtgctgaagagctt
ccaggccccaaacttggcacatgtccttcacgcccaagctgcagcatggagctgtttgag
agatctcatgcgctagagaaacagaacacactgcaactgcccccacaagccatggagagg
agtaactcgtgtcccgaactggtgttgggaagactctcatactccatcatcagcaacctg
gatgaagttggacagcaggtggagaggttggacatccccctccccatcattgcccttatt
gtttttgcctacatttcctgtgcagctgccatcctccccttctgggagacacagttggat
ttcgagaatgccttctatttctgctttgtcacactcaccaccattgggtttggggatact
gttttagaacaccctaacttcttcctgttcttctccatttatatcatcgttggaatggag
attgtgttcattgctttcaagttggtgcaaaacaggctgattgacatatacaaaaatgtt
atgctattctttgcaaaagggaagttttaccaccttgttaaaaagtga

>gi568815588r:117032212_117238056|GENSCAN_predicted_peptide_10|119_aa
MQSTLATQVGAHDRTEGLFFQFNKHSLNAGYLPGSEYPKMNQQHLQKHREVPCSACTSHL
QPPGTWTKAFGATHPAAVGVVPFSGPPALNAVLLVPSPPLEYEETEDQGRKPKNLESDV

>gi568815588r:117032212_117238056|GENSCAN_predicted_CDS_10|360_bp
atgcaatcaacactggccactcaagtaggagcccatgatcgcactgaagggctgttcttt
cagttcaacaaacattcactgaatgctggctatcttccaggctcagagtatccaaagatg
aatcagcagcatcttcagaaacacagagaagtgccctgctccgcttgcacatctcatctc
cagcctcccggtacctggaccaaagcctttggtgcgactcacccagccgctgtgggggtc
gtcccgttcagtggtccaccagccctgaatgctgtattgttagtgccctccccgccttta
gaatacgaagaaactgaagatcagggacggaagccaaagaacctggagtctgatgtctaa