FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6853, 177 aa
  1>>>pF1KB6853 177 - 177 aa - 177 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1951+/-0.0012; mu= -9.2607+/- 0.072
 mean_var=250.5252+/-51.686, 0's: 0 Z-trim(110.2): 10  B-trim: 9 in 1/51
 Lambda= 0.081031
 statistics sampled from 11415 (11418) to 11415 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.351), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS7366.1 DYDC1 gene_id:143241|Hs108|chr10        ( 177) 1122 143.4 7.1e-35


>>CCDS7366.1 DYDC1 gene_id:143241|Hs108|chr10             (177 aa)
 initn: 1122 init1: 1122 opt: 1122  Z-score: 739.6  bits: 143.4 E(32554): 7.1e-35
Smith-Waterman score: 1122; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB6 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MESIYLQKHLGACLTQGLAEVARVRPVDPIEYLALWIYKYKENVTMEQLRQKEMAKLERE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RELALMEQEMMERLKAEELLLQQQQLALQLELEMQEKERQRIQELQRAQEQLGKEMRMNM
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB6 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ENLVRNEDILHSEEATLDSGKTLAEISDRYGAPNLSRVEELDEPMFSDIALNIDQDL
              130       140       150       160       170       




177 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 20:17:04 2016 done: Mon Nov  7 20:17:04 2016
 Total Scan time:  1.780 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]