GENSCAN 1.0	Date run:  6-Nov-116	Time: 15:26:47

Sequence gi568815588r:69304883_69516323 : 211441 bp : 49.29% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  13765  14128  364  1  1   77  105   247 0.481  20.49
 1.02 Intr +  38945  39107  163  1  1  130  119   151 0.897  21.95
 1.03 Intr +  55015  55163  149  2  2   97   94   204 0.998  21.85
 1.04 Intr +  59901  60020  120  2  0  113   94    91 0.981  12.89
 1.05 Intr +  63654  63749   96  2  0  119   43    72 0.983   6.01
 1.06 Intr +  64355  64502  148  1  1  106   39   205 0.917  17.21
 1.07 Intr +  64559  64742  184  0  1   75   68   219 0.717  17.45
 1.08 Intr +  69526  69611   86  1  2   96   38    57 0.451   0.96
 1.09 Intr +  71994  72207  214  1  1   73   56   211 0.394  14.17
 1.10 Intr +  74980  75213  234  1  0   72   79   223 0.999  16.60
 1.11 Intr +  77605  77909  305  1  2   45   93   526 0.998  45.03
 1.12 Intr +  79451  79599  149  0  2   37   78   257 0.998  19.55
 1.13 Intr +  79914  80033  120  2  0   91  101   110 0.998  13.29
 1.14 Intr +  81441  81536   96  2  0  104   78    41 0.967   4.91
 1.15 Intr +  84315  84414  100  2  1   65   97   227 0.989  20.98
 1.16 Intr +  87243  87426  184  1  1  102   86   242 0.999  24.25
 1.17 Intr +  90068  90223  156  2  0   91  105   251 0.999  26.23
 1.18 Intr +  93713  93946  234  2  0  118   79   229 0.939  21.80
 1.19 Term +  96109  96253  145  1  1  105   48   209 0.758  15.98
 1.20 PlyA +  97798  97803    6                              -1.75

 2.07 PlyA -  98025  98020    6                               1.05
 2.06 Term -  98122  98110   13  0  1  103   38     7 0.213  -5.13
 2.05 Intr - 100202 100092  111  1  0  115   38   114 0.561   8.59
 2.04 Intr - 102398 102202  197  2  2   16   99   322 0.990  24.31
 2.03 Intr - 104193 104040  154  2  1  114   86   233 0.999  25.77
 2.02 Intr - 110216 110063  154  0  1   56   67   219 0.975  15.73
 2.01 Init - 111441 111042  400  0  1  110   -8   825 0.942  71.93
 2.00 Prom - 114548 114509   40                              -5.76

 3.05 PlyA - 116510 116505    6                               1.05
 3.04 Term - 117161 117124   38  0  2   93   53    55 0.230   0.00
 3.03 Intr - 117339 117225  115  0  1   80   31    66 0.251   0.12
 3.02 Intr - 118138 117868  271  0  1   45  -19   154 0.180  -2.06
 3.01 Init - 120369 120290   80  0  2   64   54   161 0.748  10.84
 3.00 Prom - 124917 124878   40                              -7.56

 4.03 PlyA - 125794 125789    6                               1.05
 4.02 Term - 128400 128219  182  1  2   73   36   173 0.691   8.37
 4.01 Init - 134469 134433   37  0  1   66   86    35 0.434   1.27
 4.00 Prom - 136371 136332   40                              -4.46

 5.00 Prom + 140681 140720   40                              -6.56
 5.01 Init + 146713 146808   96  0  0   84   92    93 0.938   9.62
 5.02 Intr + 172125 172193   69  2  0  100   91    11 0.642   1.98
 5.03 Intr + 178809 178994  186  2  0  123   73   249 0.711  26.79
 5.04 Intr + 180259 180333   75  0  0   78   80   122 0.538  10.11
 5.05 Intr + 181741 181857  117  0  0   71   75    35 0.531   1.16
 5.06 Intr + 190712 190807   96  1  0   48  105   230 0.999  20.91
 5.07 Intr + 193398 193560  163  2  1   96   36   130 0.702   8.15
 5.08 Intr + 197666 197751   86  0  2  115   97    37 0.946   6.84
 5.09 Intr + 199556 199603   48  1  0   62   80    70 0.832   2.48
 5.10 Intr + 201242 201358  117  1  0   88   80   238 0.969  23.66
 5.11 Intr + 201947 202037   91  1  1   88    7   160 0.025   7.47
 5.12 Intr + 206909 206988   80  0  2  109   99    87 0.043  11.17
 5.13 Term + 210025 210036   12  0  0  124   48    -9 0.028  -3.10
 5.14 PlyA + 211117 211122    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 189778 189939  162  0  0  108   53    91 0.838   5.88
S.002 Term + 201947 202096  150  1  0   88   49   207 0.951  14.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:69304883_69516323|GENSCAN_predicted_peptide_1|1082_aa
XRERPPRPRSPAGTPPPGVAEARRNQWAWRRWVGWRLSPSRGRERGDRERASCRRAPGRG
GGAGGGGGGGAAEQPPEDHGSPGLRRTDRPHACRPATPTASMIAAQLLAYYFTELKDDQV
KKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGD
FIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFME
KRKIKDKKLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDY
DANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGNAFPFAHPFVRPIFPGTGTNACYMEELR
HIDLVEGDEGRMCINTEWGAFGDDGSLEDIRTEFDREIDRGSLNPGKQLCLTAETPGHYL
FSYHKEKGPGVTRSVITALVCGAQRKADKCRCAFLHRFEKMVSGMYLGELVRLILVKMAK
EGLLFEGRITPELLTRGKFNTSDVSAIEKNKEGLHNAKEILTRLGVEPSDDDCVSVQHVC
TIVSFRSANLVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLV
PDSDVRFLLSESGSGKGAAMVTAVAYRLAEQHRQIEETLAHFHLTKDMLLEVKKRMRAEM
ELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRSGKKRTVEM
HNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIKGPRMPLGFTFSFPCQQTSLDAGI
LITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCEVG
LIVGTGSNACYMEEMKNVEMVEGDQGQMCINMEWGAFGDNGCLDDIRTHYDRLVDEYSLN
AGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRL
ALLQVRAILQQLGLNSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLN
VTVGVDGTLYKLHPHFSRIMHQTVKELSPKCNVSFLLSEDGSGKGAALITAVGVRLRTEA
SS

>gi568815588r:69304883_69516323|GENSCAN_predicted_CDS_1|3249_bp
nngagggagcggccgccgcgtccccgctccccggccgggacgccaccgccgggcgttgca
gaggcgcgccgcaaccaatgggcgtggaggaggtgggtcggctggcggctgtcaccctcc
aggggacgggagcgcggagaccgggagcgcgcgagctgtcgccgcgccccgggccgaggg
ggaggagccgggggaggaggaggaggaggagccgccgagcagccgccggaggaccacggc
tcgccagggctgcggaggaccgaccgtccccacgcctgccgccccgcgaccccgaccgcc
agcatgatcgccgcgcagctcctggcctattacttcacggagctgaaggatgaccaggtc
aaaaagattgacaagtatctctatgccatgcggctctccgatgaaactctcatagatatc
atgactcgcttcaggaaggagatgaagaatggcctctcccgggattttaatccaacagcc
acagtcaagatgttgccaacattcgtaaggtccattcctgatggctctgaaaagggagat
ttcattgccctggatcttggtgggtcttcctttcgaattctgcgggtgcaagtgaatcat
gagaaaaaccagaatgttcacatggagtccgaggtttatgacaccccagagaacatcgtg
cacggcagtggaagccagctttttgatcatgttgctgagtgcctgggagatttcatggag
aaaaggaagatcaaggacaagaagttacctgtgggattcacgttttcttttccttgccaa
caatccaaaatagatgaggccatcctgatcacctggacaaagcgatttaaagcgagcgga
gtggaaggagcagatgtggtcaaactgcttaacaaagccatcaaaaagcgaggggactat
gatgccaacatcgtagctgtggtgaatgacacagtgggcaccatgatgacctgtggctat
gacgaccagcactgtgaagtcggcctgatcatcggtaatgcattcccctttgcccatcca
tttgttcggcccatctttccaggcactggcaccaatgcttgctacatggaggaactgagg
cacattgatctggtggaaggagacgaggggaggatgtgtatcaatacagaatggggagcc
tttggagacgatggatcattagaagacatccggacagagtttgacagggagatagaccgg
ggatccctcaaccctggaaaacagctgtgtctgactgccgagacacctgggcattacctg
ttcagttatcacaaggaaaagggcccgggcgttacccgttcagttatcacagccctcgtg
tgtggggcgcagaggaaggctgacaagtgccggtgtgcctttctccacaggtttgagaag
atggtcagtggcatgtacttgggagagctggttcgactgatcctagtcaagatggccaag
gagggcctcttatttgaagggcggatcaccccggagctgctcacccgagggaagtttaac
accagtgatgtgtcagccatcgaaaagaataaggaaggcctccacaatgccaaagaaatc
ctgacccgcctgggagtggagccgtccgatgatgactgtgtctcagtccagcacgtttgc
accattgtctcatttcgctcagccaacttggtggctgccacactgggcgccatcttgaac
cgcctgcgtgataacaagggcacacccaggctgcggaccacggttggtgtcgacggatct
ctttacaagacgcacccacagtattcccggcgtttccacaagactctaaggcgcttggtg
ccagactccgatgtgcgcttcctcctctcggagagtggcagcggcaagggggctgccatg
gtgacggcggtggcctaccgcttggccgagcagcaccggcagatagaggagaccctggct
catttccacctcaccaaggacatgctgctggaggtgaagaagaggatgcgggccgagatg
gagctggggctgaggaagcagacgcacaacaatgccgtggttaagatgctgccctccttc
gtccggagaactcccgacgggaccgagaatggtgacttcttggccctggatcttggagga
accaatttccgtgtgctgctggtgaaaatccgtagtgggaaaaagagaacggtggaaatg
cacaacaagatctacgccattcctattgaaatcatgcagggcactggggaagagctgttt
gatcacattgtctcctgcatctctgacttcttggactacatggggatcaaaggccccagg
atgcctctgggcttcacgttctcatttccctgccagcagacgagtctggacgcgggaatc
ttgatcacgtggacaaagggttttaaggcaacagactgcgtgggccacgatgtagtcacc
ttactaagggatgcgataaaaaggagagaggaatttgacctggacgtggtggctgtggtc
aacgacacagtgggcaccatgatgacctgtgcttatgaggagcccacctgtgaggttgga
ctcattgttgggaccggcagcaatgcctgctacatggaggagatgaagaacgtggagatg
gtggagggggaccaggggcagatgtgcatcaacatggagtggggggcctttggggacaac
gggtgtctggatgatatcaggacacactacgacagactggtggacgaatattccctaaat
gctgggaaacaaaggtatgagaagatgatcagtggtatgtacctgggtgaaatcgtccgc
aacatcttaatcgacttcaccaagaagggattcctcttccgagggcagatctctgagacg
ctgaagacccggggcatctttgagaccaagtttctctctcagatcgagagtgaccgatta
gcactgctccaggtccgggctatcctccagcagctaggtctgaatagcacctgcgatgac
agtatcctcgtcaagacagtgtgcggggtggtgtccaggagggccgcacagctgtgtggc
gcaggcatggctgcggttgtggataagatccgcgagaacagaggactggaccgtctgaat
gtgactgtgggagtggacgggacactctacaagcttcatccacacttctccagaatcatg
caccagacggtgaaggaactgtcaccaaaatgtaacgtgtccttcctcctgtctgaggat
ggcagcggcaagggggccgccctcatcacggccgtgggcgtgcggttacgcacagaggca
agcagctaa

>gi568815588r:69304883_69516323|GENSCAN_predicted_peptide_2|342_aa
MGTCDIVTEANISSGPESNTTGITAFSMPSWQLALWATAYLALVLVAVTGNAIVIWIILA
HRRMRTVTNYFIVNLALADLCMAAFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVS
IYSMTAIAADRQEAPSTKAVIAGIWLVALALASPQCFYSTVTMDQGATKCVVAWPEDSGG
KTLLLYHLVVIALIYFLPLAVMFVAYSVIGLTLWRRAVPGHQAHGANLRHLQAMKKFVKT
MVLVVLTFAICWLPYHLYFILGSFQEDIYCHKFIQQVYLALFWLAMSSTMYNPIIYCCLN
HRFRSGFRLAFRCCPWVTPTKEDKLELTPTTSLSTRVNRRAM

>gi568815588r:69304883_69516323|GENSCAN_predicted_CDS_2|1029_bp
atggggacctgtgacattgtgactgaagccaatatctcatctggccctgagagcaacacc
acgggcatcacagccttctccatgcccagctggcaactggcactgtgggccacagcctac
ctggccctggtgctggtggccgtgacgggtaatgccatcgtcatctggatcatcctggcc
catcggaggatgcgcacagtcaccaactacttcatcgtcaatctggcgctggctgacctc
tgcatggctgccttcaatgccgccttcaactttgtctatgccagccacaacatctggtac
tttggccgtgccttctgctacttccagaacctcttccccatcacagccatgtttgtcagc
atctactccatgaccgccattgctgccgacaggcaagaggctcccagcaccaaggcggtt
attgctggcatctggctggtggctctcgccctggcctcccctcagtgcttctactccacc
gtcaccatggaccagggtgccaccaagtgcgtggtggcctggcccgaagacagcgggggc
aagacgctcctcctgtaccacctcgtggtgatcgccctcatctacttcctgccgctcgcg
gtgatgtttgtagcctacagcgtcatcggcctcacgctctggaggcgcgcagtgcccgga
catcaggcgcacggtgccaacctgcgccacctgcaggccatgaagaagtttgtgaagacc
atggtgctggtggtgctgacgtttgccatctgctggctgccctaccacctctacttcatc
ctgggcagcttccaggaggacatctactgccacaagttcatccagcaagtctacctggca
ctcttctggttggccatgagctctaccatgtacaatcccatcatctactgctgtctcaac
cacaggtttcgctctggattccggcttgccttccgctgctgcccatgggtcacacccacc
aaggaagataagctcgagctgactcccacgacctccctctccacgagagtcaacagaaga
gccatgtaa

>gi568815588r:69304883_69516323|GENSCAN_predicted_peptide_3|167_aa
MAVIKAVIKAVIKAVIIIPGFVDFLVCNALRGMAKMGEGEELWEVGPPGPNAQLSAKLPG
PRIVSETTAPTPFLKNPAEMDSRHLQSDLCRLMTSKGTPQMPWHYGRHQEGDSGSPGPCH
STCCHIRQHPEQTPSSFCLQYPGWLWDDSPVTQPANGQILLEPDVEK

>gi568815588r:69304883_69516323|GENSCAN_predicted_CDS_3|504_bp
atggctgtcatcaaggctgtcatcaaggctgtcatcaaggctgtcatcatcattcctggc
tttgtggatttcctagtatgcaatgccctgagaggaatggccaagatgggagaaggagag
gagctctgggaagttgggcctccaggacccaatgcccaactaagcgccaaactcccaggg
cccaggattgtctcagaaacaacagcccccacccccttcctcaagaaccctgcagaaatg
gacagcaggcatctccaaagtgacctgtgtagattaatgaccagtaaaggcacaccccag
atgccctggcactatggacggcaccaggagggggatagtgggagcccaggaccatgccac
agcacgtgttgccacatccgccagcacccagagcagacgccaagttccttctgtctgcaa
tatccaggctggctctgggatgactcccccgtgacccaaccagccaatggacagattctg
ctggagcccgatgttgagaaatga

>gi568815588r:69304883_69516323|GENSCAN_predicted_peptide_4|72_aa
MGSGFEPVAIEEAQRIHLNSFLQQLPTPGARQKFQTSVVSGDIDTAAKLIGAGAATVGVA
GSGADIGTVFGS

>gi568815588r:69304883_69516323|GENSCAN_predicted_CDS_4|219_bp
atggggtctggatttgagcctgtggctatagaggaagcccagagaattcatctaaacagc
ttcctacagcaactccctactccaggggccagacagaagttccagaccagtgttgtctct
ggggacattgacacagcagccaagttgattggtgctggggcagccacagttggtgtggct
ggttcaggggctgacattggaactgtgtttggcagctag

>gi568815588r:69304883_69516323|GENSCAN_predicted_peptide_5|411_aa
MPRGDSEQVRYCARFSYLWLKFSLIIYSTVFWERGVGQQEPSCPGDVGEKTVFSRLIGAL
VLSVGIYAEVERQKYKTLESAFLAPAIILILLGVVMFMVSFIGVLASLRDNLYLLQAFMY
ILGICLIMELIGGVVALTFRNQQLLLRQQVLSHTLGCADLSDGPGSGPVKMFMGVPVIPA
QTIDFLNDNIRRGIENYYDDLDFKNIMDFVQKKFKCCGGEDYRDWSKNQYHDCSAPGPLA
CGVPYTCCIRNTVDTAPVGTGGLSGTPGWKRLLDPGLGACELQQSLLQNIDSMVRQTEVV
NTMCGYKTIDKERFSVQDVIYVRGCTNAVIIWFMDNYTIMAGILLGILLPQFLGVLLTLL
YITRVEDIIMEHSVTDGLLGPGTWMKLEAIILGKLTQEQKTKHRMFSLQLL

>gi568815588r:69304883_69516323|GENSCAN_predicted_CDS_5|1236_bp
atgccgcgcggggactcggagcaggtgcgctactgcgcgcgcttctcctacctctggctc
aagttttcacttatcatctattccaccgtgttctgggaaaggggagtgggacagcaggaa
cccagctgccctggggatgtgggagagaagactgttttctcccgactgattggggccctg
gtcctgtctgtgggcatctatgcagaggttgagcggcagaaatataaaacccttgaaagt
gccttcctggctccagccatcatcctcatcctcctgggcgtcgtcatgttcatggtctcc
ttcattggtgtgctggcgtccctccgtgacaacctgtaccttctccaagcattcatgtac
atccttgggatctgcctcatcatggagctcattggtggcgtggtggccttgaccttccgg
aaccagcagttgctcttaaggcagcaggtgctgtcccacaccctgggttgtgcagacctc
tcagatggcccaggatctggccctgtgaaaatgttcatgggagtgcctgtgattccagcc
cagaccattgacttcctgaacgacaacattcgaagaggaattgagaactactatgatgat
ctggacttcaaaaacatcatggactttgttcagaaaaagttcaagtgctgtggcggggag
gactaccgagattggagcaagaatcagtaccacgactgcagtgcccctggacccctggcc
tgtggggtgccctacacctgctgcatcaggaacacggtagacactgctcctgtggggact
ggggggctgtcggggaccccaggatggaagaggctactggaccctggtcttggggcctgt
gaacttcagcagagcctcttgcagaatatcgattctatggtcaggcagacagaagttgtc
aacaccatgtgtggctacaaaactatcgacaaggagcgtttcagtgtgcaggatgtcatc
tacgtgcggggctgcaccaacgccgtgatcatctggttcatggacaactacaccatcatg
gcgggcatcctcctgggcatcctgcttccccagttcctgggggtgctgctgacgctgctg
tacatcacccgggtggaggacatcatcatggagcactctgtcactgatgggctcctgggg
cccgggacatggatgaagctggaagccatcattctcggcaaactgacacaggaacagaaa
accaaacaccgcatgttctcactccaactgctttga