GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:22:38

Sequence gi568815588r:35539348_35741429 : 202082 bp : 43.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  13672  13838  167  0  2   92   84   159 0.592  14.66
 1.02 Intr +  26676  26838  163  0  1   99   94   134 0.934  15.08
 1.03 Intr +  28496  28620  125  1  2   45   60    52 0.195  -2.52
 1.04 Intr +  29191  29356  166  1  1   59   94    55 0.231   3.16
 1.05 Term +  29707  29823  117  0  0  131   36   139 0.983  11.54
 1.06 PlyA +  30083  30088    6                               1.05

 2.03 PlyA -  31875  31870    6                               1.05
 2.02 Term -  39746  39592  155  0  2   76   42    73 0.171  -0.42
 2.01 Init -  46135  45859  277  1  1   71  105   247 0.561  21.85
 2.00 Prom -  53688  53649   40                              -6.46

 3.00 Prom +  55011  55050   40                              -2.96
 3.01 Init +  66221  66284   64  1  1   81   92    65 0.737   7.55
 3.02 Term +  68231  69279 1049  0  2  108   48  1122 0.973 102.50
 3.03 PlyA +  70111  70116    6                               1.05

 4.04 PlyA -  71488  71483    6                               1.05
 4.03 Term -  71629  71524  106  0  1   84   48    82 0.405   1.68
 4.02 Intr -  79790  79676  115  0  1  109   43    80 0.335   5.11
 4.01 Init -  86153  86102   52  2  1   76   53    23 0.475  -1.07
 4.00 Prom -  89444  89405   40                              -1.36

 5.04 PlyA -  90966  90961    6                               1.05
 5.03 Term - 102327  99998 2330  1  2   46   53  3667 0.047 344.38
 5.02 Intr - 105243 105109  135  1  0   67   78   103 0.839   7.74
 5.01 Init - 114180 114072  109  0  1  103   41    85 0.712   5.68
 5.00 Prom - 119058 119019   40                              -6.26

 6.00 Prom + 121912 121951   40                              -5.36
 6.01 Sngl + 127779 128504  726  2  0   79   47   681 0.634  59.33
 6.02 PlyA + 129196 129201    6                               1.05

 7.02 PlyA - 129436 129431    6                               1.05
 7.01 Sngl - 136638 136369  270  0  0   60   48   170 0.941   5.48
 7.00 Prom - 136899 136860   40                              -5.46

 8.02 PlyA - 136991 136986    6                               1.05
 8.01 Sngl - 139237 138608  630  1  0   86   37   274 0.992  18.30
 8.00 Prom - 141594 141555   40                              -4.66

 9.00 Prom + 155038 155077   40                              -4.16
 9.01 Init + 158067 158258  192  2  0   52   47   156 0.552   6.87
 9.02 Intr + 158277 158597  321  2  0  -46   60   226 0.109   2.46
 9.03 Term + 162004 162102   99  0  0   47   32   106 0.084  -0.97
 9.04 PlyA + 163870 163875    6                               1.05

10.05 PlyA - 165236 165231    6                               1.05
10.04 Term - 166057 165923  135  1  0  106   54    54 0.125   1.82
10.03 Intr - 171413 171398   16  1  1   82   75     0 0.022  -6.35
10.02 Intr - 172055 171902  154  0  1  111   24   118 0.409   6.83
10.01 Intr - 173489 173369  121  2  1   13   97    95 0.431   2.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 102082  99998 2085  1  0   85   53  3632 0.936 351.69


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_1|245_aa
VYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELE
RQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEPLEWKAHPVS
QLSSIRGKMENPPSAGLPEGKCCETFASTDVRGDLSPPSFSVESLAGGLAAAVFAASGRA
LLSVRLSSKPVLHASPARMVLFLPRLQAISRLCEDKYKDLRRSARKRSASADNLTLPRWS
PAIIS

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_1|738_bp
gtgtaccttgaaagacttttaacatacgcagagatagatatctgtccggccaactggaag
cggattgttttaggggcgatcctgctggcctccaaggtgtgggatgaccaggctgtatgg
aatgtggattactgccagatcctgaaagacatcacggtggaggacatgaacgagctagag
cgacagtttcttgaattgctgcagttcaacatcaatgttccttccagtgtctatgccaag
tattattttgatcttcgttctctggcagaagcgaacaacctgagctttcccttggagccc
ctgagcagggagagggctcacaagcttgagcctttggaatggaaagcccacccagtctcc
cagttatcatctattcgaggaaaaatggaaaaccctccctctgcaggacttcctgaaggc
aaatgttgtgaaaccttcgcaagcacagatgtgagaggtgacttaagtcctccatccttt
tctgtggagtccctagctggtggtctggctgcagctgtctttgccgccagcggccgagct
ctcctctctgtgaggctcagctccaagcccgtgcttcatgccagccctgccaggatggtg
ctgttcttgccccgcttgcaggccatctctcgcctctgcgaggacaagtacaaggaccta
agaagatccgcgaggaagcgctcagccagtgcagacaacctgactctgccccggtggtcc
ccagccatcatctcttaa

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_2|143_aa
MGRKQHMQCPKAGSEPAGYRALCAMQDKQSLGGNKVRVEAGPCLVLGQCGFYPIDNGKSL
KVSIGGDTVGSAFEEDGITCCEEKDPEGGSGGGFLGSNHISFKVTEHEINDCRTHECLQE
EMMFKNHFIYISIPPAFLLLLKM

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_2|432_bp
atgggcaggaagcagcacatgcaatgccctaaagctgggagtgaacctgcggggtaccgg
gcactgtgtgcaatgcaggacaaacaaagcctgggcgggaacaaggtgagggtggaagca
gggccctgtttggtcctgggacagtgtgggttctacccgatcgacaatggaaagtcactg
aaggtctccattggaggtgacacagtcggatctgcatttgaggaagatggcatcacctgt
tgtgaagagaaggacccagaaggcggcagcggtggaggttttcttggtagcaaccacatt
agcttcaaggttactgaacacgagataaatgactgtagaacccatgagtgcctgcaggaa
gaaatgatgttcaagaaccactttatctacatttctatacctccagctttcctccttttg
ctcaagatgtga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_3|370_aa
MEGVDLLGFLIITLNCNVTMVGKLWFVLTMLLRMLVIVLAGRPVYQDEQERFVCNTLQPG
CANVCYDVFSPVSHLRFWLIQGVCVLLPSAVFSVYVLHRGATLAALGPRRCPDPREPASG
QRRCPRPFGERGGLQVPDFSAGYIIHLLLRTLLEAAFGALHYFLFGFLAPKKFPCTRPPC
TGVVDCYVSRPTEKSLLMLFLWAVSALSFLLGLADLVCSLRRRMRRRPGPPTSPSIRKQS
GASGHAEGRRTDEEGGREEEGAPAPPGARAGGEGAGSPRRTSRVSGHTKIPDEDESEVTS
SASEKLGRQPRGRPHREAAQDPRGSGSEEQPSAAPSRLAAPPSCSSLQPPDPPASSSGAP
HLRARKSEWV

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_3|1113_bp
atggaaggcgtggacttgctagggtttctcatcatcacattaaactgcaacgtgaccatg
gtgggaaagctctggttcgtcctcacgatgctgctgcggatgctggtgattgtcttggcg
gggcgacccgtctaccaggacgagcaggagaggtttgtctgcaacacgctgcagccggga
tgcgccaatgtttgctacgacgtcttctcccccgtgtctcacctgcggttctggctgatc
cagggcgtgtgcgtcctcctcccctccgccgtcttcagcgtctatgtcctgcaccgagga
gccacgctcgccgcgctgggcccccgccgctgccccgacccccgggagccggcctccggg
cagagacgctgcccgcggccattcggggagcgcggcggcctccaggtgcccgacttttcg
gccggctacatcatccacctcctcctccggaccctgctggaggcagccttcggggccttg
cactactttctctttggattcctggccccgaagaagttcccttgcacgcgccctccgtgc
acgggcgtggtggactgctacgtgtcgcggcccacagagaagtccctgctgatgctgttc
ctctgggcggtcagcgcgctgtcttttctgctgggcctcgccgacctggtctgcagcctg
cggcggcggatgcgcaggaggccgggaccccccacaagcccctccatccggaagcagagc
ggagcctcaggccacgcggagggacgccggactgacgaggagggtgggcgggaggaagag
ggggcaccggcgcccccgggtgcacgcgccggaggggagggggctggcagccccaggcgt
acatccagggtgtcagggcacacgaagattccggatgaggatgagagtgaggtgacatcc
tccgccagcgaaaagctgggcagacagccccggggcaggccccaccgagaggccgcccag
gaccccaggggctcaggatccgaggagcagccctcagcagcccccagccgcctggccgcg
cccccttcctgcagcagcctgcagccccctgacccgcctgccagctccagtggtgctccc
cacctgagagccaggaagtctgagtgggtgtga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_4|90_aa
MDTKRETTDARAYLRMEGEDGPEYLEAEIEQIRQGAGGIWEDHLFIKAVGSHRLEWSVHS
ALSHHSVEYEVEDSSSDHLPPLSTWSLTLL

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_4|273_bp
atggacacaaagagagaaacaacagatgccagggcctacttgaggatggagggcgaggat
gggcctgagtacctcgaagctgaaatagagcagatccggcagggggccgggggaatatgg
gaagaccatctcttcatcaaagcagtggggagccacaggctggaatggtctgtccactca
gctctcagccatcactcagtagagtatgaagttgaggactcgtcctcggaccacctgcct
ccactttccacgtggtccctgactcttttatga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_5|857_aa
MGKTPEGDRAEKQKEPESLMTFLKICIYQPGKLPYFYQHWNLWQLPAADAFWRLALWKQG
ANRRDSEFLHSTYKWEFRFAGAAFKPPERRKGVRKGPAQAAGRAAADAPLEGVRLSADPP
PGRSIRETPDHPLYPSAALSWAPPPAPLCAPPGGRGHRAEAHSMEWGYLLEVTSLLAALA
LLQRSSGAAAASAKELACQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVE
IQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDR
LPEQGNPDTLCMDYNRTDLTTAAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGR
GGGGGDAAAPPARGGGGGGKARPPGGGAAPCEPGCQCRAPMVSVSSERHPLYNRVKTGQI
ANCALPCHNPFFSQDERAFTVFWIGLWSVLCFVSTFATVSTFLIDMERFKYPERPIIFLS
ACYLFVSVGYLVRLVAGHEKVACSGGAPGAGGAGGAGGAAAGAGAAGAGAGGPGGRGEYE
ELGAVEQHVRYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGY
SQYFHLAAWLVPSVKSIAVLALSSVDGDPVAGICYVGNQSLDNLRGFVLAPLVIYLFIGT
MFLLAGFVSLFRIRSVIKQQDGPTKTHKLEKLMIRLGLFTVLYTVPAAVVVACLFYEQHN
RPRWEATHNCPCLRDLQPDQARRPDYAVFMLKYFMCLVVGITSGVWVWSGKTLESWRSLC
TRCCWASKGAAVGGGAGATAAGGGGGPGGGGGGGPGGGGGPGGGGGSLYSDVSTGLTWRS
GTASSVSYPKQMPLSQV

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_5|2574_bp
atgggtaaaacccctgagggggacagggcagagaaacagaaggaacctgaatccttgatg
acgtttttgaaaatctgtatctatcaacctggaaaactgccctacttttatcagcactgg
aacctctggcaattacctgcagctgatgcgttctggagactcgccctctggaaacaaggt
gccaaccgcagagatagtgaatttctacattcaacatacaagtgggaattccgatttgca
ggagccgccttcaaacccccggagcggcggaaaggagtgcggaagggccctgcccaggct
gcgggccgcgccgctgcggacgcgcccctagaaggggttagattatcggcagacccccct
cccgggcgaagcataagggagaccccagatcacccgctgtacccgtctgcggctctctcg
tgggccccccccccggcacccctctgcgcgccgcctggagggcgagggcaccgggccgag
gcgcacagcatggagtggggttacctgttggaagtgacctcgctgctggccgccttggcg
ctgctgcagcgctctagcggcgctgcggccgcctcggccaaggagctggcatgccaagag
atcaccgtgccgctgtgtaagggcatcggctacaactacacctacatgcccaatcagttc
aaccacgacacgcaagacgaggcgggcctggaggtgcaccagttctggccgctggtggag
atccagtgctcgcccgatctcaagttcttcctgtgcagcatgtacacgcccatctgccta
gaggactacaagaagccgctgccgccctgccgctcggtgtgcgagcgcgccaaggccggc
tgcgcgccgctcatgcgccagtacggcttcgcctggcccgaccgcatgcgctgcgaccgg
ctgcccgagcaaggcaaccctgacacgctgtgcatggactacaaccgcaccgacctaacc
accgccgcgcccagcccgccgcgccgcctgccgccgccgccgcccggcgagcagccgcct
tcgggcagcggccacggccgcccgccgggggccaggcccccgcaccgcggcggcggcagg
ggcggtggcggcggggacgcggcggcgcccccagctcgcggcggcggcggtggcgggaag
gcgcggccccctggcggcggcgcggctccctgcgagcccgggtgccagtgccgcgcgcct
atggtgagcgtgtccagcgagcgccacccgctctacaaccgcgtcaagacaggccagatc
gctaactgcgcgctgccctgccacaacccctttttcagccaggacgagcgcgccttcacc
gtcttctggatcggcctgtggtcggtgctctgcttcgtgtccaccttcgccaccgtctcc
accttccttatcgacatggagcgcttcaagtacccggagcggcccattatcttcctctcg
gcctgctacctcttcgtgtcggtgggctacctagtgcgcctggtggcgggccacgagaag
gtggcgtgcagcggtggcgcgccgggcgcggggggcgctgggggcgcgggcggcgcggcg
gcgggcgcgggcgcggcgggcgcgggcgcgggcggcccgggcgggcgcggcgagtacgag
gagctgggcgcggtggagcagcacgtgcgctacgagaccaccggccccgcgctgtgcacc
gtggtcttcttgctggtctacttcttcggcatggccagctccatctggtgggtgatcttg
tcgctcacatggttcctggcggccggtatgaagtggggcaacgaagccatcgccggctac
tcgcagtacttccacctggccgcgtggcttgtgcccagcgtcaagtccatcgcggtgctg
gcgctcagctcggtggacggcgacccggtggcgggcatctgctacgtgggcaaccagagc
ctggacaacctgcgcggcttcgtgctggcgccgctggtcatctacctcttcatcggcacc
atgttcctgctggccggcttcgtgtccctcttccgcatccgctcggtcatcaagcaacag
gacggccccaccaagacgcacaagctggagaagctgatgatccgcctgggcctgttcacc
gtgctctacaccgtgcccgccgcggtggtggtcgcctgcctcttctacgagcagcacaac
cgcccgcgctgggaggccacgcacaactgcccgtgcctgcgggacctgcagcccgaccag
gcacgcaggcccgactacgccgtcttcatgctcaagtacttcatgtgcctagtggtgggc
atcacctcgggcgtgtgggtctggtccggcaagacgctggagtcctggcgctccctgtgc
acccgctgctgctgggccagcaagggcgccgcggtgggcgggggcgcgggcgccacggcc
gcggggggtggcggcgggccggggggcggcggcggcgggggacccggcggcggcgggggg
ccgggcggcggcgggggctccctctacagcgacgtcagcactggcctgacgtggcggtcg
ggcacggcgagctccgtgtcttatccaaagcagatgccattgtcccaggtctga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_6|241_aa
MNITTIITAITTTITITTIPTIITTITNPITTTTTITTTTTIITTITTTTIFTTATTIIT
TTTIITTITTTTTIITTITTTTIIITITTIPHHHHHHHHHHHHHHHHHYHYHHHHHYHHH
HHHHHHHHHHHHHHHHHYHHHHHHYHPPPSSPPSPSPPPSLPPPTITTTITITPPSLPPP
SSSPPPSPSPPPSLPPPPSSPPSSLALPLPSPLHHHHDFLALSSQMSPPYLAHTRHLTNI
C

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_6|726_bp
atgaacatcactaccatcatcactgccatcaccaccaccatcaccatcactaccatcccc
accatcatcaccaccatcaccaaccctatcaccaccaccaccaccatcaccaccaccacc
accatcatcaccaccatcaccaccaccaccatcttcaccaccgccaccaccatcatcacc
accaccaccatcatcaccaccatcaccaccaccaccaccatcatcaccaccatcaccact
accaccatcatcatcaccatcactaccatcccccaccatcaccaccatcaccatcaccac
caccaccatcatcaccaccatcactaccactaccatcatcatcaccactatcaccatcat
caccaccaccaccatcaccaccatcaccaccatcatcaccaccatcaccactaccatcat
catcaccatcactaccaccccccaccatcatcaccaccatcaccatcaccaccaccatca
ctaccaccccccaccatcaccaccaccatcaccatcacaccaccatcactaccaccccca
tcatcatcaccaccaccatcaccatcaccaccaccatcactaccacccccaccatcatca
ccaccatcatcactagcactgccgctaccatcaccactgcaccatcatcatgacttcctg
gcactatcatcacaaatgtcaccaccatacttggcacatactagacacttaacgaatatt
tgctga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_7|89_aa
MEEAEKSPLCSNNKEKAEETENQPFLGSRQREVIGQNIAPRTGGSERQIKRIPSPAEKPM
STNFHGNKCEGRKTSTVIDELLKTQFGQD

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_7|270_bp
atggaagaagctgagaagtctccactctgctctaacaacaaggaaaaagctgaggaaact
gaaaatcaacctttcttaggttctcggcaaagggaagtcatagggcaaaatatagccccc
agaactggagggtcagaaaggcagataaagagaattccatcaccagcggagaaacccatg
agcacaaacttccatgggaacaagtgtgagggtaggaaaacctcaactgtgattgatgaa
ttgctgaagactcaatttggacaagactga

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_8|209_aa
MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIRNQKRARIAKSILSQKNKAGGIMLPD
FKLYYQSTVNKTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNK
WCWENWLAICRKLKLDPFLTPYTKINSRWIKDLNIRPKTIKTLEENLGNTIQDIGMGKDF
MSKTPKAMATKAKIDKWDLIKLKSFCTAK

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_8|630_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatacggaaccaaaaaagagcc
cgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcatgctacctgac
ttcaaactatactaccagtctacagtaaacaaaacagcatggtactggtaccaaaacaga
gatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctacaactat
ctgatctttgacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttatacaaaaatcaattcaagatggattaaagacttaaacattagacctaaaaccata
aaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttc
atgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaataa

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_9|203_aa
MLRKARRKLIYQKANHYHKECRQMYRTEIRMARLARKAGNIYVPAEPKLAFVIRIRDING
VSPKLLCSHQIFNGTFVKLNKASINMLRIVEPHIAWEYPNLKSVNEVIYKRGYGKINKKG
ITLTDNTLIAVSLNKYGIICMEDLIHEIYTVGKCFKEASDFPCPSNYLLHEHLALTSDAA
LYPGASADPHCLPPPEQPQAVVR

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_9|612_bp
atgcttcgaaaggcaaggaggaaacttatctatcaaaaagcaaaccactatcacaaggaa
tgtaggcagatgtacagaactgaaattcgaatggcgaggctggcaagaaaagctggcaac
atctatgtacctgcagaacccaaattggcgtttgtcatcaggatcagagatatcaatggt
gtgagcccaaagcttctttgctctcatcaaatcttcaatggaacctttgtgaagctcaac
aaggcttcaattaacatgctgaggattgtagaaccacatattgcatgggagtacccaaat
ctgaagtcagtaaatgaagtaatctacaagcgtggttatggcaaaatcaataagaaggga
attactttgacagataacactttgattgctgtgtctcttaataaatatggcatcatctgc
atggaggatctgattcatgagatctatactgttggaaagtgcttcaaagaagcaagtgac
ttcccgtgcccttcaaattatcttctccacgagcacctggcgctgacttcggatgctgcc
ctgtacccaggggcctctgctgatccccactgcctgccccctccggagcagccccaggcc
gtggtgcggtaa

>gi568815588r:35539348_35741429|GENSCAN_predicted_peptide_10|141_aa
SSRKAEELDILKSTQLISLYCLGLDEDTCTFPWQELSASLGRHTLWDQVLNHSGRATEVQ
RRKKSPGHNSGKAFGGTQALSGTLRDKWAVESYSVRKDVLLEVNDYPEKTSASENSWTWI
HLTKSVFSEFEHECSVSPAMS

>gi568815588r:35539348_35741429|GENSCAN_predicted_CDS_10|426_bp
agttcaagaaaagctgaagaattggacatcctgaagtccactcagctgatttccttgtac
tgcttgggcctggatgaggacacttgtacctttccatggcaggagttatcagccagcctc
ggaaggcacacgctgtgggaccaggtgctaaaccattcaggaagggcaacagaagttcag
cgaaggaagaagtctccggggcacaatagtggaaaagctttcggaggaactcaggccttg
agtgggactctgagagataagtgggctgtggagagctacagtgtaaggaaggatgtcttg
ctggaagtcaacgattaccctgagaaaacatctgcatctgaaaacagctggacgtggatt
catctcaccaaaagtgttttttcagagttcgaacatgaatgcagtgtgtcaccagcaatg
tcatga