GENSCAN 1.0	Date run:  8-Nov-116	Time: 06:52:41

Sequence gi568815589r:109279559_109563434 : 283876 bp : 45.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3534   3613   80  2  2   74   53    61 0.688   1.73
 1.02 Intr +   3957   4064  108  0  0   80   65    94 0.949   5.70
 1.03 Intr +   8573   8725  153  2  0   72   66    97 0.429   5.09
 1.04 Intr +  22427  22530  104  2  2   89   69    88 0.436   6.82
 1.05 Intr +  28268  28385  118  0  1   56  101    53 0.061   2.92
 1.06 Term +  37898  38024  127  2  1   87   49    68 0.066   0.56
 1.07 PlyA +  38029  38034    6                               1.05

 2.05 PlyA -  38117  38112    6                               1.05
 2.04 Term -  39966  39949   18  0  0   83   46    11 0.119  -5.28
 2.03 Intr -  41235  40583  653  1  2   60  117   665 0.836  58.23
 2.02 Intr -  41639  41446  194  1  2   22   46   114 0.200  -0.26
 2.01 Init -  47077  47037   41  1  2   68  110    19 0.392   1.85
 2.00 Prom -  47197  47158   40                              -7.86

 3.00 Prom +  56128  56167   40                              -4.86
 3.01 Init +  58002  58058   57  2  0   35   88    36 0.272  -0.39
 3.02 Intr +  65758  65934  177  0  0  104   44    93 0.933   6.62
 3.03 Term +  66001  66198  198  0  0   30   47   150 0.544   2.50
 3.04 PlyA +  69111  69116    6                               1.05

 4.24 PlyA -  69527  69522    6                               1.05
 4.23 Term -  91358  91208  151  1  1  104   37   159 0.882   9.78
 4.22 Intr -  99556  99504   53  1  2  116   52     6 0.024  -2.49
 4.21 Intr - 102229 102094  136  0  1  114   70   102 0.922  11.57
 4.20 Intr - 102889 102744  146  1  2   75   80    91 0.997   6.08
 4.19 Intr - 103993 103865  129  1  0  103   99   241 0.973  27.59
 4.18 Intr - 109821 109675  147  0  0   74  114   116 0.996  13.23
 4.17 Intr - 111641 111580   62  0  2  122  111    17 0.983   5.85
 4.16 Intr - 112003 111913   91  1  1   61   70    91 0.983   4.17
 4.15 Intr - 125050 124890  161  2  2   53   94   132 0.775  10.01
 4.14 Intr - 127060 126904  157  1  1   20   80   177 0.628   9.68
 4.13 Intr - 130518 130441   78  0  0   82   95    58 0.979   5.65
 4.12 Intr - 130857 130671  187  2  1   17  105   266 0.957  20.89
 4.11 Intr - 141042 140866  177  2  0   77   52   196 0.800  13.93
 4.10 Intr - 143294 143160  135  1  0   61   84    40 0.547   0.58
 4.09 Intr - 147564 147392  173  0  2   94   87   117 0.924  10.94
 4.08 Intr - 149126 149063   64  1  1   40  109     3 0.332  -3.68
 4.07 Intr - 153603 153515   89  0  2   86  111    32 0.747   4.07
 4.06 Intr - 157412 157325   88  1  1  102   75    74 0.993   7.47
 4.05 Intr - 158676 158556  121  1  1   89   94    63 0.993   6.55
 4.04 Intr - 165734 165682   53  1  2  106  101    22 0.255   3.85
 4.03 Intr - 176518 176376  143  1  2  101    9    51 0.062  -2.35
 4.02 Intr - 177841 177734  108  1  0   90   95   133 0.958  14.68
 4.01 Init - 182699 182640   60  2  0   96   43    27 0.348   0.57
 4.00 Prom - 184179 184140   40                              -3.46

 5.00 Prom + 192720 192759   40                              -2.26
 5.01 Init + 199085 199153   69  1  0   76   75    80 0.789   6.55
 5.02 Intr + 203304 203351   48  2  0  110   48    30 0.152   0.08
 5.03 Term + 212607 212690   84  2  0   70   49   100 0.357   1.95
 5.04 PlyA + 213372 213377    6                               1.05

 6.00 Prom + 213994 214033   40                              -4.46
 6.01 Init + 216256 216270   15  0  0   81   91    27 0.329   2.50
 6.02 Intr + 218101 218466  366  0  0   87   99    75 0.402   3.84
 6.03 Intr + 218616 218690   75  2  0   50   96    74 0.518   4.11
 6.04 Intr + 241038 241175  138  2  0  116  116    74 0.992  13.66
 6.05 Term + 241473 241484   12  2  0  106   44     7 0.295  -3.70
 6.06 PlyA + 242522 242527    6                               1.05

 7.06 PlyA - 242986 242981    6                               1.05
 7.05 Term - 254014 253891  124  0  1   12   40   141 0.343  -0.44
 7.04 Intr - 254317 254204  114  0  0   59   72    67 0.531   1.76
 7.03 Intr - 254839 254479  361  2  1   41   67   388 0.662  26.28
 7.02 Intr - 281081 280820  262  2  1   99   94    38 0.118   2.56
 7.01 Intr - 282884 282768  117  2  0  -24  -36   303 0.176   7.36

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_1|229_aa
MKMQRLQMHTWVTKLEKNKEAATIKSGDAEPRYINTPEYCSAIIQDNYEDEIKNKENFND
NVRNGTSAFMKDIEASSLASAAARGCSNRVPSTSTSPVTESTGSVILDIQAPEPPMLQMP
VPAPKVQQNNYARALATKSQLSTSPEKQEEMAESQRGKEARWMSLISAGGLRAGSYTCYT
LVTAHLPRTQLGTLETPNNCGLDWTEVPQHGHTEGVIVFQTISEHKHPN

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_1|690_bp
atgaaaatgcaacgtctacagatgcacacttgggtgacaaaactggagaagaacaaggaa
gcagccacaataaagtcaggggacgcagaaccacgatacatcaacactccagaatactgt
tcagccattatacaagataattacgaagatgagataaaaaacaaggaaaattttaatgac
aatgttaggaatgggactagtgcctttatgaaagacattgaagccagcagccttgcctct
gctgctgcgagaggatgcagcaacagggtgccatccacaagtacctcaccagtcactgaa
tctactggctctgtgatcttggatatccaggccccagaacctcccatgttacagatgcca
gttcctgcacctaaagtgcagcaaaacaactatgccagagctctggccaccaagagtcaa
ctttcaacatccccagagaagcaagaagagatggcagagtctcagaggggcaaagaggct
cgctggatgtcgctcataagcgctggggggctacgtgcaggaagctacacttgttacacc
cttgttactgctcatttgccacgcacacagcttggcacattggagacgcccaataactgt
ggtctggactggactgaggtgccacagcacggtcacactgagggtgttattgtgttccag
acaatttcagaacacaagcatcctaactag

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_2|301_aa
MGPQIGTQAKAAIRALGAGNTCVLTYVYTREHTYSSRGRSGRQGAAQTRLAITRRSPEGG
GRAAVPAAAAAAAAAAAGAPWQPAAARPEQPLGSPRRPPARESARRRRRRDGPERALPPA
ATRSRRWPGRRAPQAARARPRPRRGLAPGRSPREAARAAEGTDGVAGRSRAAAQRQRQRQ
RQRRGRRQGAPPARMLRFLRRTFGRRSMQRYARGAAGRGAAGLGDERDGGPRGGPAAAAS
SSALPAAPGGSVFPAGGGPLLTGGAAVHISAAGAAKATLYCRVFLLDGTEVSVDLPPPRS
G

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_2|906_bp
atgggtcctcagataggaacccaggctaaggctgccatcagggctctgggcgccggaaac
acgtgtgtgctcacctacgtgtacacacgtgagcacacctacagcagcagggggcgctcg
ggccggcagggggcagcacagacccggcttgcaattacccggcgcagccccgagggagga
gggcgtgctgcagtcccggcggcagcggcggcggcggcggcggcggcggctggagccccc
tggcagcccgcagccgcccgtccggagcagcccctcggcagcccgcgcaggccgccggcc
cgggagagcgcgcggcggcggcggcggcgggacggccccgagcgcgccctcccgcctgcg
gccactcgcagccggcgctggccgggccggcgcgccccgcaggcggctagagcgcggcct
cggcctcggcgcgggcttgccccgggccgtagcccgcgagaggcggcgcgggcggccgag
ggcactgacggcgtcgcgggacgctcccgggcggcggcgcagcggcagcggcagcggcag
cggcagcgcagggggcggaggcagggggcgcccccagccaggatgctgcggttcctgcgc
cggacctttggccgccgctccatgcagcgctacgcgcggggcgcggcggggcgcggggcc
gccgggctgggggacgagcgcgatggggggccacgggggggcccggccgccgccgcctcc
tcctcggcgctgcccgccgcgcccgggggcagcgtgttcccggcgggcggcgggcccctg
ctcaccggcggcgcggccgtgcacatctccgccgccggcgccgccaaggccaccctctac
tgccgcgtcttcctgctcgacgggaccgaagtgagcgtggacctgccgcctcctcgcagc
gggtag

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_3|143_aa
MNKKPECPGLQDKRGTQAELHLSSYYGLLGLWQDLPVSESSTVRTLSKGVEGETEEELKA
QELRSLPPPRPPQHSPDHSLKQLLRTCPASSAARSGLLNSPQDCGSLRLERSLFSEASQI
DFLYKLNVAFAVTLLVIHRSKDS

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_3|432_bp
atgaacaagaagcctgaatgtccagggttgcaagataaaagaggaacccaggcagagctg
catttatccagctactatgggctgctcgggctctggcaggatctccctgtgtcagagtct
tctacagtaagaaccctctcaaaaggtgtggaaggggaaacagaagaggagctaaaggct
caggagctcaggtccctgcccccacctcgtcctcctcagcacagccccgatcactctctc
aagcagctgcttagaacttgcccagcgagttctgcagcaaggtctggcctgctgaactca
ccccaggactgtggctccctgaggctggagcggagccttttttcagaagcctctcagatc
gactttctttataagctgaatgtggcctttgcggtcaccctcttggtcatccacagatct
aaagattcctga

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_4|902_aa
MGRWPSALAADVSLSVQKTQKQDTGQVLLDMVHNHLGVTEKEYFGLQHDDDSVDSPGARF
SKFFPPMSCILCVQKYLWEPQGHLQTNTCLIQVPRNESTQGMNRLTCPLNSAVVLASYAV
QSHFGDYNSSIHHPGYLSDSHFIPDQNEDFLTKVESLHEQHSGLKQSEAESCYINIARTL
DFYGVELHSGRDLHNLDLMIGIASAGVAVYRKYICTSFYPWVNILKISFKRKKFFIHQRQ
KQAESREHIVAFNMLNYRSCKNLWKSCVEHHTFFQAKKLLPQEKNVLSQYWTMGSRNTKK
SVNNQYCKKVIGGMVWNPAMRRSLSVEHLETKSLPSRSPPITPNWRSPRLRHEIRKPRHS
SADNLANEMTYITETEDVFYTYKGSLAPQDSDSEVSQNRSPHQESLSENNPAQSYLTQKS
SSSVSPSSNAPGSCSPDGVDQQLLDDFHRVTKGGSTEDASQYYCDKNDNGDSYLVLIRIT
PDEDGKFGFNLKADTCIPKLNEGDQIVLINGRDISEHTHDQVVMFIKASRESHSRELALV
IRRRAVRSFADFKSEDELNQLFPEAIFPMCPEGGDTLEGSMAQLKKGLESGTVLIQFEQL
YRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTRVLLQGNEDYINASYVNMEIPAANLVNK
YIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDPPDVMNHGGFHIQ
CQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRV
DSEPVLVHCSAGIGRTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSVELEQ
FRFTRPDAKETLTRQCKGGPPELCKVAVLTMLPHIDHKNHCAKFCTALELRRYRITTDGF
LA

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_4|2709_bp
atggggcggtggcccagtgccttggctgcagacgtctccctgtcagtgcagaagactcag
aaacaagacactggccaggttcttctggatatggtgcacaaccacctgggtgtgactgaa
aaggaatattttggtttacagcatgatgacgactccgtggactctcctggagcccgattc
tcaaagttcttccctcccatgagctgcatcctctgcgttcagaagtacctgtgggagcct
cagggccacttgcagacaaatacctgcctcatccaagtccccaggaatgagtccacacaa
ggcatgaataggttaacctgccctcttaactcagcagtggttctagcgtcctatgccgta
caatctcattttggagactataattcttccatacatcatccaggctatctttccgatagt
cactttatacccgatcaaaatgaggactttttaacaaaagtcgaatctctgcatgagcag
cacagtgggctaaaacaatcagaagcagaatcctgctatatcaacatagcgcggaccctc
gacttctatggagtagaactgcacagtggtagggatctgcacaatttagacctaatgatt
ggaattgcttccgcgggtgttgctgtgtaccgaaaatacatttgcacaagtttctatcct
tgggtgaacattctcaaaatttctttcaaaaggaaaaagttcttcatacatcagcgacag
aaacaggctgaatccagggaacatattgtggccttcaacatgctgaattaccgatcttgc
aaaaacttgtggaaatcctgtgttgagcaccatacgttctttcaggcaaagaagctacta
cctcaggaaaagaatgttctgtctcagtactggactatgggctctcggaacaccaaaaag
tcggtaaataaccaatattgcaaaaaggtgattggcgggatggtgtggaacccagccatg
cggagatccttatcagtggagcacttagaaaccaagagtctgccttctcgttcccctccc
attactcccaactggcgaagtcctcggctccggcacgaaatccgaaagccacgccactct
tctgcagataaccttgcaaatgaaatgacctacatcacggaaacggaagatgtattttac
acgtacaagggctctctggcccctcaagacagcgattctgaagtttctcagaaccgaagc
ccgcaccaagagagtttatccgagaacaatccggcacaaagctacctgacccagaagtca
tccagttctgtgtctccatcttcaaatgctccaggctcctgctcacctgacggcgttgat
cagcagctcttagatgacttccacagggtgaccaaagggggctccaccgaggacgccagc
cagtactactgtgacaagaatgataatggtgacagctacttagtcttgatccgtatcaca
ccagatgaagatggaaaatttggatttaatcttaaggcggacacctgcattcctaagctg
aacgaaggggatcaaatcgtgttaatcaatggccgggacatctcagaacacacgcatgac
caagtggtgatgttcatcaaagccagccgggagtcccactcacgggagctggccctggtg
atcaggaggagagctgtccgctcatttgctgacttcaagtctgaagatgaactgaaccag
cttttccccgaagccattttccccatgtgtccggagggtggggacactttggagggatcc
atggcacagctaaagaagggcctcgaaagcgggacggtgctgatccagtttgagcaactc
tacagaaaaaagccaggtttggccatcacgtttgcaaagctgcctcaaaatttggacaaa
aaccgatataaagatgtgctgccttatgacaccacccgggtattattgcagggaaatgaa
gattatattaatgcaagttacgtgaacatggaaattcctgctgctaaccttgtgaacaag
tacatcgccactcaggggcccctgccgcatacctgtgcacagttttggcaggttgtctgg
gatcagaagttgtcactcattgtcatgttgacgactctcacagaacgagggcggaccaaa
tgtcaccagtactggccagatccccccgacgtcatgaaccacggcggctttcacatccag
tgtcagtcagaggactgcaccatcgcctatgtgtcccgagaaatgctggtcacaaacacc
cagaccggggaagaacacacagtgacacatctccagtacgtcgcatggcctgaccacggt
gtgcccgatgactcctccgactttctggaatttgtaaactatgtgaggtctctgagagtg
gacagcgagcccgtcctagttcactgcagtgctggaataggtcgaaccggtgtgttggtc
actatggaaacagccatgtgcctaactgagaggaacctgcccatttacccactggatatt
gtccgaaaaatgcgagaccagcgcgccatgatggtgcagacatcagtggagctggaacaa
ttcagattcacccgccctgatgctaaggaaaccctgacacggcaatgtaaaggaggcccc
ccggagctatgcaaggtagcagtactgaccatgcttcctcacatagaccacaagaaccac
tgtgccaaattctgcactgccctggagctccgcaggtatcgcatcacaactgatggcttt
ctggcctaa

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_5|66_aa
MSKVTDDDLRKIAKLTVFCLFYQENETDINPQGPRQHSQAQWWLAVKKQLMELVAASLTE
NLWASP

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_5|201_bp
atgagcaaggtaactgatgatgatttgcgcaaaatcgccaagttaactgtgttctgtctt
ttctaccaggaaaatgaaactgacattaacccacagggtcctcgtcagcactcgcaggcc
caatggtggctggcggtcaaaaaacagctgatggagctggttgctgcctccctcaccgag
aacctctgggctagcccttga

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_6|201_aa
MTDDMVPDKSFHIVRGTGRIYWLWSFVPGPGNAIFESREADSPWEPSAGSRSRLAPRGLC
APSEPRAGVAAARGPPEVPDARAPRVAPAPARLERTPTLRRRVPAASPPRPSPTRRPARA
LPPRPRQPRTLPPARWGRTGPYLQHPGARSAQSLLDSVSFWIGKYVGQFVSSTQSLCALY
CSVIALSVAWFVKFTYVKESV

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_6|606_bp
atgactgatgatatggtacctgataaatcattccatatcgtccgcggaacggggaggatt
tattggctctggagtttcgtgccaggcccaggaaatgccatctttgaaagccgagaggcg
gattcgccctgggagccgagcgctggcagccgctctcggctagctccccgcgggctgtgt
gccccctcggagccccgagccggggtcgcggcggcacggggtcctccggaggtgccggac
gcacgggctccgcgggttgcgcccgcccctgcccggctggagcgcacgcccacgctccgg
cgccgcgtcccggccgccagcccgccccggccgagccccacccggcgccccgcccgcgcc
ctcccgccccggccccgccagccccgcaccctgcccccggcccgctggggtcgcacgggc
ccgtacctgcagcatccgggggcgcggagcgcccagagccttcttgacagtgtttccttt
tggattggcaagtatgtgggacagtttgtgtcaagcacacagtctctttgcgccctctac
tgttcagttatagcactgtccgtggcctggtttgttaaattcacgtacgttaaggagagt
gtgtga

>gi568815589r:109279559_109563434|GENSCAN_predicted_peptide_7|325_aa
KEEEEEEEKEEEEEEEEEKEEEEEEEEEEEEKLSLEGLIVGPVSRLVLGPLFTSLCMALL
CMMSLAQGSNSKMGNQKGHSGHLSLAKTLGSDSTGVLGSFHFCGHKKAKTAQSCNQVHFM
YLLLKPTTITPREEPQLPQPAPVTITTTLSSEAETQQPPAACRSPPPALSAGDTTPGTTG
SGTGNGGPGGFTSAAPAGGDKKVIATKVLGTVKWFNLRNGYAFINRNDIKEDTFVPQTAK
TKNNPRRGPPPNYQQNYQNSESGGKNEGWERAPQGQAQPRRPYSRQPREDGNEEDKENQR
GETQGQQPPQRRYRRNLPTQTHRKP

>gi568815589r:109279559_109563434|GENSCAN_predicted_CDS_7|978_bp
aaggaagaagaagaagaagaagaaaaagaagaagaagaggaagaggaagaagaaaaagaa
gaagaagaagaagaagaagaagaagaagaagaaaaattgtccttggagggtcttatagtg
gggcctgtgagccgcctggtgctcggaccgttgttcacttctctgtgcatggctttgctc
tgcatgatgtcattagcacaaggaagcaactcaaaaatgggcaaccagaaggggcactca
ggccatctgtccttagccaagacccttgggtcagattccactggtgtccttggttcattt
cacttctgtggtcacaagaaagccaaaactgcacagtcttgtaaccaagtacatttcatg
tacctactgctgaaacctactaccatcacaccccgggaggagccgcagctgccgcagccg
gccccagtcaccatcaccacaaccttgagcagcgaggccgagacccagcagccgcccgcc
gcttgccgctcgccgccccccgccctcagcgccggtgacaccacgcccggcactacgggc
agcggcacaggaaacggtggcccgggaggcttcacatcagcagcacctgccggcggggac
aagaaggtcatcgcaacgaaggttttgggaacagtaaaatggttcaacttaaggaacgga
tatgctttcatcaacaggaatgacatcaaggaagatacatttgtaccccagactgccaaa
acgaagaataaccccaggaggggtcctccacccaattaccagcaaaactaccagaatagc
gagagtgggggaaagaacgagggatgggagcgtgctccccaaggccaggctcaaccacgc
cggccctacagcagacagcctagagaggacggcaatgaagaggataaagaaaatcaacga
ggtgagacccaaggtcagcagccacctcaacgtcggtaccgccgcaacttaccgacgcag
acacacagaaaaccctaa