GENSCAN 1.0	Date run:  8-Nov-116	Time: 12:41:57

Sequence gi568815589r:96221245_96483573 : 262329 bp : 43.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    433    428    6                               1.05
 1.02 Term -   1442   1333  110  0  2  102   50    69 0.181   3.17
 1.01 Init -   8099   8027   73  2  1   67   27    85 0.230   1.56
 1.00 Prom -   8267   8228   40                              -4.56

 2.12 PlyA -  10572  10567    6                               1.05
 2.11 Term -  11693  11493  201  2  0  102   46    58 0.651   0.39
 2.10 Intr -  14326  14225  102  1  0   98   77    95 0.929   9.77
 2.09 Intr -  23150  23085   66  2  0  100   94    86 0.923   9.50
 2.08 Intr -  25346  25312   35  0  2   93  116     0 0.235   1.24
 2.07 Intr -  31666  31559  108  2  0   75   95    85 0.479   8.16
 2.06 Intr -  33664  33624   41  0  2   21  109    66 0.005  -0.13
 2.05 Intr -  58189  58127   63  0  0  100   95    61 0.015   5.83
 2.04 Intr -  65808  65732   77  0  2   78    1   123 0.018   0.91
 2.03 Intr -  68323  68234   90  1  0   84   59    40 0.409   0.89
 2.02 Intr -  77218  77172   47  2  2   79   99    51 0.934   3.43
 2.01 Init -  80860  80707  154  1  1  110  110   146 0.994  17.18
 2.00 Prom -  82971  82932   40                              -5.66

 3.13 PlyA -  84598  84593    6                               1.05
 3.12 Term -  93655  93536  120  1  0  120   38    45 0.534   1.17
 3.11 Intr -  98933  98841   93  2  0  120   13    94 0.670   5.26
 3.10 Intr - 100836 100754   83  1  2  130   97   -49 0.204  -0.44
 3.09 Intr - 102925 102847   79  1  1   84  113    28 0.164   4.02
 3.08 Intr - 122165 122028  138  2  0   74   85    13 0.340   0.26
 3.07 Intr - 122752 122660   93  1  0   89   99    52 0.651   6.56
 3.06 Intr - 124157 124055  103  1  1  109   76    20 0.417   3.08
 3.05 Intr - 129927 129859   69  2  0   82   86    89 0.390   6.40
 3.04 Intr - 132749 132703   47  2  2   77   39    45 0.125  -4.29
 3.03 Intr - 143306 143220   87  2  0  107  115    17 0.326   6.47
 3.02 Intr - 147061 147028   34  0  1   91  109     7 0.201   1.33
 3.01 Init - 162390 162233  158  0  2   70   76   418 0.649  36.18
 3.00 Prom - 164632 164593   40                              -4.46

 4.05 PlyA - 164721 164716    6                               1.05
 4.04 Term - 167215 166993  223  0  1   78   33   299 0.999  19.79
 4.03 Intr - 171314 171154  161  2  2   32   55   152 0.025   5.09
 4.02 Intr - 173698 173579  120  1  0   72   64    91 0.025   5.79
 4.01 Init - 196788 196369  420  0  0   67  105   737 0.908  69.69
 4.00 Prom - 206565 206526   40                              -3.76

 5.00 Prom + 210867 210906   40                              -3.86
 5.01 Init + 229036 229384  349  0  1   92   75   649 0.977  59.35
 5.02 Intr + 237135 237297  163  1  1   84   53   128 0.902   7.93
 5.03 Intr + 244093 244254  162  1  0   90  101    27 0.757   3.29
 5.04 Intr + 244466 244534   69  2  0   92   96    26 0.660   2.10
 5.05 Intr + 245524 245563   40  1  1   85   75    77 0.829   4.33
 5.06 Term + 251570 251722  153  1  0   96   43    76 0.721   1.82
 5.07 PlyA + 252969 252974    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  65808  65728   81  0  0   78   48   122 0.908   4.89
S.002 Intr - 171292 171154  139  2  1   37   55   165 0.965   7.62


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:96221245_96483573|GENSCAN_predicted_peptide_1|60_aa
MLRNIRQGTALPLPPTNTELSGPKWTSLPTLNPICPHLLLAVDAGIAKGEGDATLRVSVL

>gi568815589r:96221245_96483573|GENSCAN_predicted_CDS_1|183_bp
atgcttcggaacatccgacagggcacagcactgcccctacccccaaccaacacagaatta
tctggacccaaatggacttccttgcctactctcaatcccatatgtccacatttgctgctg
gctgtggatgcaggaatagccaagggagagggagatgctacactaagggtgtcggtgctg
tag

>gi568815589r:96221245_96483573|GENSCAN_predicted_peptide_2|327_aa
MGDVLEQFFILTGLLVCLACLAKCVRFSRCVLLNYWKVLPKSFLRSMGQWAVITGAGDGI
GKAYSFEEADEVNWETKVLNSLAILLMDSKTQKWRLEERGPDPDPKRVFSDLIKERIQGK
SIKCLDKLFQPITNQEIFESTYDLRTLEKLEAIATEIERTTGRSVKIIQADFTKDDIYEH
IKEKLAGLEIGILDDTANSETYGIKAFVCAFSKALQEEYKAKEVIIQAGFLSLIPAWAFY
SGAFQRLLLTHYVAYLKLNTKPSICATSQEAEGRRVPFGWHWEQENEVIMGCCSKKYWQL
LLGRLPGVSSLSCSCGWEPEHPTSKTL

>gi568815589r:96221245_96483573|GENSCAN_predicted_CDS_2|984_bp
atgggggacgtcctggaacagttcttcatcctcacagggctgctggtgtgcctggcctgc
ctggcgaagtgcgtgagattctccagatgtgttttactgaactactggaaagttttgcca
aagtctttcttgcggtcaatgggacagtgggcagtgatcactggagcaggcgatggaatt
gggaaagcgtactcgttcgaggaggctgatgaagtgaattgggagacaaaggtgcttaat
tctttagccatcctgttgatggattccaagactcaaaaatggaggctagaggaaaggggt
cctgatccagaccccaagagagtgttctcggacctcatcaaagaaagaattcagggcaag
tccataaagtgtttagataaactttttcaaccaattaccaatcaggaaatctttgaatcc
acctatgacctccggacgctggaaaaactagaggccattgccacagagatcgagcggact
acagggaggagtgtgaagattatacaagcagattttacaaaagatgacatctacgagcat
attaaagaaaaacttgcaggcttagaaattggaattttagatgacacagctaattctgaa
acatatggaatcaaggcgtttgtgtgcgcattttccaaggccctgcaagaggaatataaa
gcaaaagaagtcatcatccaggcgggctttctgagcctgatcccggcctgggccttctac
agcggtgccttccaaaggctgctcctgacacactatgtggcatacctgaagctcaacacc
aagccttccatctgtgctacctcccaggaagccgaaggccgcagagtccctttcggatgg
cactgggagcaggaaaatgaggtgattatgggctgctgctccaagaagtattggcagctg
ttgctggggcggctccctggggtgtcatccctttcttgctcttgtggatgggaaccagag
caccccacttcaaagactctgtaa

>gi568815589r:96221245_96483573|GENSCAN_predicted_peptide_3|367_aa
MTAGGQAEAEGAGGEPGAARLPSRVARLLSALFYGTCSFLIVLVNKALLTTYGFPSPIFL
GIGQMAATIMILYVSKLNKIIHFPDFDKKIPVKLLSGCSVVDDVKPVLGKQYSLNIILSV
FAIILGAFIAAGSDLAFNLEGYIFVFLNDIFTAANGVYTKQKMDPKELGKYGVLFYNACF
MIIPTLIISVSTGDLQQLFVPLEYFKTYPSHHAILPLNIPGSTFEFWEGVVLSAFALKPY
LLLVSADVLHGSVQLLQFSPDDSSGWSHQECIRCLHWDINRWRLHFLFVKLCRVKYLVCS
GAFTTGAFPHMLTYRQPLVYGKEAQMDRLDLVEVLPQVGIAKKGSFSSRFLGNWIQLGED
HLNSHPI

>gi568815589r:96221245_96483573|GENSCAN_predicted_CDS_3|1104_bp
atgacggccggcggccaggccgaggccgagggcgctggcggggagcccggcgcggcgcgg
ctgccctcgcgggtggcccggctgctgtcggcgctcttctacgggacctgctccttcctc
atcgtgcttgtcaacaaggcgctgctgaccacctacggtttcccgtcaccaattttcctt
ggaattggacagatggcagccaccataatgatactatatgtgtccaagctaaacaaaatc
attcacttccctgattttgataagaaaattcctgtaaagctgctctctggatgcagtgtg
gttgatgatgtgaagcctgtgctggggaagcagtattcactcaacatcatcctcagtgtc
tttgccattattctcggggctttcatagcagctgggtctgaccttgcttttaacttagaa
ggctatatttttgtattcctgaatgatatcttcacagcagcaaatggagtttataccaaa
cagaaaatggacccaaaggagctagggaaatacggagtacttttctacaatgcctgcttc
atgattatcccaactcttattattagtgtctccactggagacctgcaacagctttttgtt
cctctggagtattttaaaacctatcccagccatcacgccattttacctctaaatattcca
ggatccacatttgaattttgggaaggtgttgttctttcagcatttgccctgaaaccgtat
ctgctgctggtttctgctgatgtactccacggttctgtgcagctattacaattcagccct
gacgacagcagtggttggagccatcaagaatgtatccgttgcctacattgggatattaat
cggtggagactacattttctctttgttaaactttgtagggttaaatatttggtttgttca
ggagcttttaccacaggtgcatttcctcacatgctcacctaccgccaacccctggtgtat
gggaaggaggcccaaatggataggctcgacttggtggaagttctgcctcaggtgggcata
gccaaaaaggggtcattctcttctcggttcctggggaattggatccaactgggagaagac
cacctgaattctcatcccatctaa

>gi568815589r:96221245_96483573|GENSCAN_predicted_peptide_4|307_aa
MIRGFEAPMAENPPPPPPPVIFCHDSPKRVLVSVIRTTPIKPTCGGGGEPEPPPPLIPTS
PGFSDFMVYPWRWGENAHNVTLSPGAAGAAASAALPAAAAAEHSGLRGRGAPPPAASASA
AASGGEDEEEASSPDSGHLKVRGPICVTIQTVEKPLFKVDSSKHISVFTPERNLLFVQKM
VLTLCFEGCLSRFTHANRHCPKHPYARLKREEPTDTLSKHQAADNKAAAEWLARYWEMRE
QRTPTLKGKLVQKADQEQQDPLEYLQSDEEDDEKRGAQRRLQEQRERLHGALALIELANL
TGAPLRQ

>gi568815589r:96221245_96483573|GENSCAN_predicted_CDS_4|924_bp
atgatccggggcttcgaggcgcccatggcggagaacccgccgccgccgccgccgcccgtc
atcttctgccacgactccccgaagcgggtgctggtgtcggtcatcaggacgaccccgatc
aagccaacgtgcggcggtggaggggagccggagccgccgccgccgctcatccccaccagc
cccggcttcagcgacttcatggtgtacccgtggcgctggggcgagaacgcacacaacgtg
acgctcagccctggggccgcgggggccgccgcctcggccgccctgcctgcagccgcagcc
gccgagcactcggggcttcgtggccggggcgcgcccccgcccgccgcctcggcctccgcc
gccgcctcgggaggtgaggacgaggaggaagcgagcagcccagacagcggccacctcaag
gtgagaggccctatctgtgtgactatccagactgtggaaaagcctttgttcaaagtggac
agctcaaaacacatcagcgtcttcacaccggagagaaaccttttgtttgttcagaaaatg
gtgttaaccttgtgttttgaaggctgcctgagcagattcacccatgcaaaccgccactgt
ccgaagcacccctacgccaggctgaagagagaggagcccacggacacactcagcaaacat
caggctgccgacaacaaggccgcggccgagtggctggcgaggtattgggaaatgagagag
cagcgcacccccactttgaaaggcaagctggttcagaaggctgatcaggagcagcaggac
cctctggaataccttcagtctgatgaagaggacgacgagaagagaggggcccagcgccgg
ctgcaggagcagcgggagcgcctgcatggagccctcgcgctcatagagcttgccaacctg
actggggcgccactccgacagtag

>gi568815589r:96221245_96483573|GENSCAN_predicted_peptide_5|311_aa
MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
AAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKR
TPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDR
PLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRT
WGSGKDTSWRDDAFLVSAEEESRPGFCPHCPSETVTMSPDLMDAAVCVFLDLSEAFDFID
FFVNVLSCWFL

>gi568815589r:96221245_96483573|GENSCAN_predicted_CDS_5|936_bp
atgaagggcgctctggggagtcccgtggctgccgctggcgccgcgatgcaggagagtttc
ggctgcgtggtggccaaccgcttccatcagctgctggacgacgagtcggacccgttcgac
atcctgcgcgaggccgagcgccggcgccagcagcagctgcagcgcaagaggcgcgacgag
gcggcggcggcggccggggccggtccccgcggcggcaggagcccagccggggcctcgggc
cacagagccggcgcgggcggccggagggagtcgcagaaggagcgcaagagcctcccggcg
cccgtcgctcagcggcccgatagccccgggggcggcctgcaggcgccgggccagaagcgg
actcctagaagaggggagcagcaaggatggaatgacagccgtgggccggaggggatgctc
gaaagagctgagcggagatcctacagggaataccgaccctatgagacagagaggcaggca
gacttcacagctgagaagtttccagatgaaaaaccaggtgataggtttgatcgagacaga
ccgttgagaggacgtggaggcccgagagggggtatgcgcggcagaggcagaggtggccct
gggaacagagtttttgacgcttttgaccagagaggaaagcgagaatttgaaagatatggt
gggaatgacaaaatagcagtcagaactgaagacaacatgggtggatgtggagttcgaacc
tggggatcgggtaaagataccagctggagggatgatgccttcctggtgtctgcagaagaa
gagtccaggcctggcttctgtcctcactgtccttctgaaacagtcaccatgtctccagat
ctaatggatgctgcagtctgcgtctttcttgacctctcagaagcatttgactttattgat
ttcttcgtaaacgtgctctcctgttggtttctgtga