GENSCAN 1.0	Date run: 27-Jul-117	Time: 10:34:40

Sequence gi568815589r:33013457_33267169 : 253713 bp : 45.17% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  13029  13160  132  2  0   64   63   144 0.994   9.64
 1.02 Intr +  13357  13534  178  0  1   78   94   100 0.990   9.09
 1.03 Intr +  16429  16533  105  2  0   52  102    63 0.940   4.29
 1.04 Intr +  16984  17211  228  2  0   71  113    90 0.990   7.64
 1.05 Intr +  20760  20874  115  1  1   65   28    80 0.962  -0.79
 1.06 Intr +  23118  23233  116  0  2   52   80   141 0.982   9.79
 1.07 Intr +  23559  23659  101  1  2   45  121   108 0.999   9.63
 1.08 Intr +  25229  25421  193  1  1    9   26   231 0.199   8.07
 1.09 Term +  30937  31136  200  2  2   10   48   156 0.169   1.36
 1.10 PlyA +  31646  31651    6                               1.05

 2.10 PlyA -  33118  33113    6                               1.05
 2.09 Term -  33935  33837   99  2  0   90   31   114 0.985   4.03
 2.08 Intr -  39834  39667  168  0  0   43  109   141 0.964  11.84
 2.07 Intr -  44258  44142  117  2  0   93   86   109 0.980  11.86
 2.06 Intr -  47128  47009  120  1  0   39   98   101 0.974   6.89
 2.05 Intr -  48721  48593  129  1  0   96   97    94 0.999  11.99
 2.04 Intr -  55478  55368  111  2  0  110   91    24 0.958   5.48
 2.03 Intr -  60328  60140  189  1  0   45  110   168 0.650  14.48
 2.02 Intr -  63273  63127  147  0  0   77   64   133 0.546  10.23
 2.01 Init -  69701  69696    6  2  0   64   97    10 0.160  -0.19
 2.00 Prom -  70589  70550   40                              -9.26

 3.00 Prom +  74421  74460   40                              -4.96
 3.01 Init +  75866  76346  481  1  1   42  -22   242 0.330   4.12
 3.02 Term +  76376  76848  473  0  2   12   55   304 0.394  14.59
 3.03 PlyA +  76867  76872    6                               1.05

 4.09 PlyA -  77664  77659    6                               1.05
 4.08 Term - 100130  99998  133  1  1  121   40   109 0.945   6.96
 4.07 Intr - 102657 102535  123  2  0   90   95    37 0.943   4.30
 4.06 Intr - 107150 106963  188  2  2   80  110   173 0.990  17.19
 4.05 Intr - 114658 114580   79  0  1   99   55    81 0.816   5.45
 4.04 Intr - 120813 120674  140  0  2   52   56   154 0.912   7.86
 4.03 Intr - 121968 121733  236  1  2  109   94   397 0.970  39.81
 4.02 Intr - 146423 146307  117  0  0   90   81    83 0.417   8.24
 4.01 Init - 153713 153302  412  2  1   84   87   454 0.202  39.58
 4.00 Prom - 158125 158086   40                              -8.86

 5.00 Prom + 163588 163627   40                              -3.36
 5.01 Init + 163984 164013   30  0  0   59  111    -8 0.653  -1.80
 5.02 Term + 165869 165961   93  1  0   87   55   140 0.923   8.43
 5.03 PlyA + 166507 166512    6                               1.05

 6.03 PlyA - 169382 169377    6                               1.05
 6.02 Term - 173803 173651  153  1  0  109   36    47 0.323  -0.48
 6.01 Init - 176135 175881  255  2  0   67   92    85 0.447   4.06
 6.00 Prom - 178774 178735   40                              -1.86

 7.04 PlyA - 181626 181621    6                               1.05
 7.03 Term - 189028 188939   90  1  0  103   44    63 0.307   1.12
 7.02 Intr - 205248 205156   93  0  0   23   67   106 0.188   2.16
 7.01 Init - 208186 208127   60  1  0   62  111     9 0.349   1.85
 7.00 Prom - 213450 213411   40                              -3.86

 8.00 Prom + 215431 215470   40                              -4.86
 8.01 Init + 226753 226813   61  0  1   90   84   137 0.716  13.05
 8.02 Intr + 231656 231696   41  0  2  113   91   -10 0.799  -0.26
 8.03 Intr + 233160 233272  113  2  2  131   95    57 0.927   9.88
 8.04 Term + 234970 235015   46  1  1   77   42    81 0.852  -0.92
 8.05 PlyA + 235089 235094    6                               1.05

 9.10 PlyA - 239035 239030    6                               1.05
 9.09 Term - 241852 241763   90  1  0   96   51   123 0.979   7.12
 9.08 Intr - 242471 242409   63  2  0   85  109    -1 0.583   0.61
 9.07 Intr - 243452 243345  108  2  0   95  119   131 0.998  17.38
 9.06 Intr - 245577 245464  114  0  0   64   93   117 0.999  10.44
 9.05 Intr - 247713 247631   83  1  2  105   94    51 0.992   6.76
 9.04 Intr - 249374 249246  129  0  0  105   98    74 0.999  10.77
 9.03 Intr - 249930 249781  150  1  0   53   86    44 0.615   0.83
 9.02 Intr - 251139 250768  372  1  0   44   79   354 0.496  25.13
 9.01 Intr - 252607 252492  116  0  2   64   80    39 0.242   0.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_1|455_aa
MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKK
RELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYN
GATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMEC
QGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDII
IVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDI
KCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQ
VELVDFDPNQERRRHYNGEAYEDDEHHPRGALPALDPRWDSYLRPPGAAAPQIRPSALRV
RGPTPPRSGCKGAGGELGCPSLQCWRDGRVGLQKG

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_1|1368_bp
atggtgaaagaaacaacttactacgatgttttgggggtcaaacccaatgctactcaggaa
gaattgaaaaaggcttataggaaactggctttgaagtaccatcctgataagaacccaaat
gaaggagagaagtttaaacagatttctcaagcttacgaagttctctctgatgcaaagaaa
agggaattatatgacaaaggaggagaacaggcaattaaagagggtggagcaggtggcggt
tttggctcccccatggacatctttgatatgttttttggaggaggaggaaggatgcagaga
gaaaggagaggtaaaaatgttgtacatcagctctcagtaaccctagaagacttatataat
ggtgcaacaagaaaactggctctgcaaaagaatgtgatttgtgacaaatgtgaaggtaga
ggaggtaagaaaggagcagtagagtgctgtcccaattgccgaggtactggaatgcaaata
agaattcatcagataggacctggaatggttcagcaaattcagtctgtgtgcatggagtgc
cagggccatggggagcggatcagtcctaaagatagatgtaaaagctgcaacggaaggaag
atagttcgagagaagaaaattttagaagttcatattgacaaaggcatgaaagatggccag
aagataacattccatggtgaaggagaccaagaaccaggactggagccaggcgatattatc
attgtgttagatcagaaggaccatgctgtttttactcgacgaggagaagaccttttcatg
tgtatggacatacagctcgttgaagcactgtgtggcttccagaagccaatatctactctt
gacaaccgaaccatcgtcatcacctctcatccaggtcagattgtcaagcatggagatatc
aagtgtgtactaaatgaaggcatgccaatttatcgtagaccatatgaaaagggtcgccta
atcatcgaatttaaggtaaactttcctgagaatggctttctctctcctgataaactgtct
ttgctggaaaaactcctacccgagaggaaggaagtggaagagactgatgagatggaccaa
gtagaactggtggactttgatccaaatcaggaaagacggcgccactacaatggagaagca
tatgaggatgatgaacatcatcccagaggggctctaccggccctggacccaagatgggac
tcctacctccgaccacccggagcagcggcgccccagatccggccgtccgccctgcgcgtg
cgcggcccgaccccgccgcggtctggctgtaagggcgctggaggggagctgggctgcccc
agccttcaatgctggagggacggccgcgtggggcttcagaaaggctag

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_2|361_aa
MKSGSQTPTQAEVTLGVRRRCRWCVARLALRESWGLLPERYGYVDRNRIFGYLKENSLHR
ALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLIDLYEQAYPDGS
SKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDV
EEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQA
QDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKIWNMKTTECSNTFKSLGSTAGTDITVN
SVILLPKNPEHFVVCNRSNTVVIMNMQGQVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK
P

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_2|1086_bp
atgaagagcgggagccagacgccgacccaagcggaagtgacgttaggtgtccgccggagg
tgtcgttggtgtgttgcgcgactggccttgagggagagctggggcctgctcccggagaga
tacggctatgtcgatcgaaatcgaatcttcggatacttgaaggagaacagtttacatcgg
gcgttagccaccttgcaggaggagactactgtgtctctgaatactgtggacagcattgag
agttttgtggctgacattaacagtggccattgggatactgtgttgcaggctatacagtct
ctgaaattgccagacaaaaccctcattgacctctatgaacaggcatacccagatggaagt
agcaaagaaaagagaagagcagcaattgcccaggccttagctggcgaagtcagtgtggtg
cctccatctcgtctcatggcattgctgggacaggcactgaagtggcagcagcatcaggga
ttgcttcctcctggtatgaccatagatttgtttcgaggcaaggcagctgtcaaagatgtg
gaagaagaaaagtttcctacacaactgagcaggcatattaagtttggtcagaaatcacat
gtggagtgtgctcgattttctccagatggtcagtatttggtcactgggtctgttgatgga
ttcattgaagtatggaactttactactggaaaaatcagaaaggatcttaagtaccaggcc
caagataactttatgatgatggatgatgctgtcctctgcatgtgtttcagcagagataca
gaaatgttagcaactggggcccaagatggaaaaatcaagatctggaatatgaagaccaca
gaatgttcaaatacctttaaatccctgggcagcaccgcagggacagatattaccgtcaac
agtgtgattctacttcctaaaaaccctgagcactttgtggtgtgcaacagatcaaacacg
gtggtcatcatgaacatgcaggggcaggtgcacgagaaggatgtgattggtattgcacat
caccctcatcagaacctgattgctacctacagtgaagatggactcctaaagctctggaaa
ccataa

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_3|317_aa
MIISIDAEKAFNKIQQPFMLKTLNKLGIDGTYLKLIRAIYDKPTANIILNGQKLEAFPLK
TGTRQGCPLSPLLFNLVLEVLARTITQEKEIKGIRLGKGEVKFSLFADDMIVYLENPIVS
APNLLKLISNFSKVSGYKINVQKPQAFLYTNNRQTESQIMKNKRPRNPTYKGCEGPLQGE
LQTTAQRNKRGHKQMEEHSMLINIVKMAILPKVIYRFNAIPIKLPMTFHTELEKTTLKFM
WNQKRACIAKSNLSQKNKAGDITLPDFKLSYKATVTKTARYWYQNRDIDQWNRTEPSEIM
LHIYNYLIFGKPDKNKK

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_3|954_bp
atgattatttccatagatgcagaaaaggccttcaacaaaattcaacagcccttcatgcta
aaaactctcaataaattaggtattgatgggacgtatctcaagttaataagagctatttat
gacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattccctttgaaa
actggcactagacagggatgccctctctcaccactcctattcaacctagtgttggaagtt
ctggccaggacaatcacgcaggagaaagaaataaagggtattcgattaggaaaaggggaa
gtcaaattttccctgtttgcagatgacatgattgtatatttagaaaaccccatcgtctca
gccccaaatctccttaagctgatcagcaacttcagcaaagtctcaggatacaaaatcaat
gtgcaaaaaccacaagcattcctatacaccaataacagacaaacagagagccaaatcatg
aagaataaaagacctaggaatccaacttataagggatgtgaaggacctcttcaaggagaa
ctacaaaccactgctcaacggaataaaagaggacacaaacaaatggaagaacattccatg
ctcatcaatatcgtgaaaatggccatactgcccaaggtaatttacagattcaatgccatc
cccatcaagctaccaatgactttccacacagaattggaaaaaactactttaaagttcatg
tggaaccaaaaaagagcctgcattgccaagtcaaacctaagccaaaagaacaaagctgga
gacatcacgctacctgacttcaaactatcctacaaggctacagtaaccaaaacagcacgg
tactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatg
ctgcatatctacaactatctgatctttggcaaacctgacaaaaacaagaaatga

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_4|475_aa
MRLREPLLSGSAAMPGASLQRACRLLVAVCALHLGVTLVYYLAGRDLSRLPQLVGVSTPL
QGGSNSAAAIGQSSGELRTGGARPPPPLGASSQPRPGGDSSPVVDSGPGPASNLTSVPVP
HTTALSLPACPEESPLLAKSLCWTSVDYCGSGAVVVGEQQLAKPVLLTSLRCDAQEVGPM
LIEFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPV
LQRQQLDYGIYVINQVGGLLAVYGFHQGQGTLCTFPMTPGEALEDCCGIVLHHLLQGDSE
EVERERERNADLTTAATAAATTAATTTLAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSD
VDLIPMNDHNAYRCFSQPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYW
GWGGEDDDIFNRFDRIAHTKETMLSDGLNSLTYQVLDVQRYPLYTQITVDIGTPS

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_4|1428_bp
atgaggcttcgggagccgctcctgagcggcagcgccgcgatgccaggcgcgtccctacag
cgggcctgccgcctgctcgtggccgtctgcgctctgcaccttggcgtcaccctcgtttac
tacctggctggccgcgacctgagccgcctgccccaactggtcggagtctccacaccgctg
cagggcggctcgaacagtgccgccgccatcgggcagtcctccggggagctccggaccgga
ggggcccggccgccgcctcctctaggcgcctcctcccagccgcgcccgggtggcgactcc
agcccagtcgtggattctggccctggccccgctagcaacttgacctcggtcccagtgccc
cacaccaccgcactgtcgctgcccgcctgccctgaggagtccccgctgcttgctaagtcc
ctgtgctggacttctgtggactactgtggctctggggctgtggttgtgggtgaacaacag
ctagctaaaccagtgctgttgacatcattgagatgtgacgcacaggaagtgggccccatg
ctgattgagtttaacatgcctgtggacctggagctcgtggcaaagcagaacccaaatgtg
aagatgggcggccgctatgcccccagggactgcgtctctcctcacaaggtggccatcatc
attccattccgcaaccggcaggagcacctcaagtactggctatattatttgcacccagtc
ctgcagcgccagcagctggactatggcatctatgttatcaaccaggtaggaggattgttg
gcagtttacggcttccatcaaggtcaaggaactctgtgcaccttccctatgaccccaggg
gaagcactcgaggactgctgtggcattgtgctgcatcacttgctgcagggagattctgaa
gaagtagagagagagagagagaggaatgccgacctaactaccgctgccactgctgctgcc
accaccgctgccaccaccaccctggcgggagacactatattcaatcgtgctaagctcctc
aatgttggctttcaagaagccttgaaggactatgactacacctgctttgtgtttagtgac
gtggacctcattccaatgaatgaccataatgcgtacaggtgtttttcacagccacggcac
atttccgttgcaatggataagtttggattcagcctaccttatgttcagtattttggaggt
gtctctgctctaagtaaacaacagtttctaaccatcaatggatttcctaataattattgg
ggctggggaggagaagatgatgacatttttaacaggtttgaccgaattgcacacacaaag
gagacaatgctctctgatggtttgaactcactcacctaccaggtgctggatgtacagaga
tacccattgtatacccaaatcacagtggacatcgggacaccgagctag

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_5|40_aa
MAKPSPPSVLFPVLPNLRYGLHQISASERIWKDIDPNFIQ

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_5|123_bp
atggccaaacctagcccaccgtctgttttgtttcctgttcttcccaacctgcgctatgga
cttcatcagatttcagcatcagagagaatatggaaggacatcgaccctaacttcatccag
tga

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_6|135_aa
MSGLGQQTAPAVKEPAGLWGRHAIKRQLQERQWDECQTDVSAKYGRSSEEASSLVAWDRR
LAGLPTSHPSPPCALLPECLPEHSYGSQGTVPPELELLADRCKNMGTRDAGSSARIRVLA
KQLKSFDSPFPARPF

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_6|408_bp
atgtcaggcctggggcaacaaacagcccctgctgtcaaggaacccgcaggcttgtggggc
cgtcatgctatcaaaaggcagctccaagagagacagtgggatgagtgtcaaacagatgtt
tcagccaagtatggcaggagctcagaggaggcctcatcacttgttgcctgggacagacgt
ctggctggtctgcccacctcccaccccagccctccctgtgcgctgctgccagaatgtctt
cctgaacacagctatggttcacaggggacagtccctcctgagctggaacttcttgctgac
aggtgtaagaacatggggaccagagacgcagggtcctctgctcgtatcagagtgctggcc
aagcaactgaagtcctttgacagcccctttcctgctaggcccttctaa

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_7|80_aa
MREGCFPLPSSRDTTSAVDQPGSRQKTDGLLSVVIEGFNEDIVYESASKAKVPTIPLFLR
QHQHFQGYEGHSHQMGCNTE

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_7|243_bp
atgagggaaggatgcttcccattaccctcatctagagacaccacctctgctgtggaccag
ccagggtctcggcagaaaacagatgggttactcagtgtggtcattgaagggtttaatgaa
gacattgtttatgaaagtgccagcaaggctaaggttcccactatccccttgtttctgaga
cagcatcagcatttccagggctatgaaggccacagccaccagatgggctgcaacactgaa
tga

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_8|86_aa
MAVRQWVIALALAALLVVDREVPVAAGKLPFSRMPICEHMVESPTCSQMSNLVCGTDGLT
YTNECQLCLARIKTKQDIQIMKDGKC

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_8|261_bp
atggccgtccgccagtgggtaatcgccctggccttggctgccctccttgttgtggacagg
gaagtgccagtggcagcaggaaagctccctttctcaagaatgcccatctgtgaacacatg
gtagagtctccaacctgttcccagatgtccaacctggtctgcggcactgatgggctcaca
tatacgaatgaatgccagctctgcttggcccggataaaaaccaaacaggacatccagatc
atgaaagatggcaaatgctga

>gi568815589r:33013457_33267169|GENSCAN_predicted_peptide_9|408_aa
XSASNREIFLSMDSALLSTLGENIKCTGSYCNTLIPEGAGREPRQSEPPAQRGPPPSGRP
PARSTASGHDRPTRGAAAGARRPRMKKKTRRRSTRSEELTRSEELTLSEEATWSEEATQS
EEATQGEEMNRSQEVTRDEESTRSEEVTREEMAAAGLTVTVTHTQIMDALKCVQWERLGG
KQSLAHYSKRDETNTIQGTGQSSHRKQMACDEKGNEKHDLHVTSQQGSSEPVVQDLAQVV
EEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNSPQEEVELKKLKHLE
KSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLIL
PENFKDSRLKRKGLVKKVQAFLAECDTVEQNICQETERLQSTNFALAE

>gi568815589r:33013457_33267169|GENSCAN_predicted_CDS_9|1227_bp
nnctcagcatccaatcgagaaatcttcttgtcaatggattctgctctactgtccacctta
ggggaaaatatcaaatgcactggtagttactgcaatacacttattccagaaggggcaggc
cgggagccgcgccagtcggagcccccggcccagcgtggtccgcctccctctgggcgtcca
cctgcccggagtactgccagcgggcatgaccgacccaccaggggcgccgccgccggcgct
cgcaggccgcggatgaagaagaaaacccggcgccgctcgacccggagcgaggagttgacc
cggagcgaggagttgaccctgagtgaggaagcgacctggagtgaagaggcgacccagagt
gaggaggcgacccagggcgaagagatgaatcggagccaggaggtgacccgggacgaggag
tcgacccggagcgaggaggtgaccagggaggaaatggcggcagctgggctcaccgtgact
gtcacccacacacaaatcatggatgcactcaagtgtgttcagtgggagagacttggagga
aaacagtcacttgcccattacagcaagcgagacgagaccaatacaatacagggtacaggg
cagtcaagccacaggaagcagatggcttgtgatgaaaaaggcaatgagaagcacgacctt
catgttacctcccagcagggcagcagtgaaccagttgtccaagacctggcccaggttgtt
gaagaggtcataggggttccacagtcttttcagaaactcatatttaagggaaaatctctg
aaggaaatggaaacaccgttgtcagcacttggaatacaagatggttgccgggtcatgtta
attgggaaaaagaacagtccacaggaagaggttgaactaaagaagttgaaacatttggag
aagtctgtggagaagatagctgaccagctggaagagttgaataaagagcttactggaatc
cagcagggttttctgcccaaggatttgcaagctgaagctctctgcaaacttgataggaga
gtaaaagccacaatagagcagtttatgaagatcttggaggagattgacacactgatcctg
ccagaaaatttcaaagacagtagattgaaaaggaaaggcttggtaaaaaaggttcaggca
ttcctagccgagtgtgacacagtggagcagaacatctgccaggagactgagcggctgcag
tctacaaactttgccctggccgagtga