GENSCAN 1.0	Date run:  6-Nov-116	Time: 04:25:55

Sequence gi568815590r:33448756_33658772 : 210017 bp : 45.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   4755   4461  295  0  1  126  103   123 0.846  14.18
 1.01 Init -  12697  12617   81  1  0   98   81    62 0.898   7.48
 1.00 Prom -  13562  13523   40                              -5.46

 2.00 Prom +  16051  16090   40                              -4.86
 2.01 Init +  36452  36783  332  1  2   98   23   100 0.332   0.61
 2.02 Intr +  39765  39874  110  0  2  107   88    82 0.996  10.03
 2.03 Intr +  39979  40043   65  2  2   88  102     0 0.996  -0.16
 2.04 Intr +  40233  40384  152  2  2  101   98    80 0.992   9.26
 2.05 Intr +  41530  41584   55  1  1   92   78    18 0.970   0.18
 2.06 Intr +  46787  46861   75  1  0   97   93    97 0.999  10.81
 2.07 Intr +  47870  47986  117  1  0   55  100   244 0.982  22.96
 2.08 Intr +  48477  48542   66  2  0   72   83    54 0.809   2.40
 2.09 Term +  49677  49874  198  2  0  107   34   344 0.994  28.30
 2.10 PlyA +  50859  50864    6                               1.05

 3.08 PlyA -  50919  50914    6                              -0.45
 3.07 Term -  50998  50978   21  1  0   99   49    16 0.792  -2.89
 3.06 Intr -  51735  51573  163  2  1   35  116   100 0.593   7.48
 3.05 Intr -  54817  54674  144  0  0   99   90    31 0.931   3.80
 3.04 Intr -  55180  54993  188  1  2  107   94   178 0.999  18.79
 3.03 Intr -  58566  58474   93  0  0   78   90    38 0.855   3.16
 3.02 Intr -  61177  60991  187  0  1   60   91    -3 0.717  -3.11
 3.01 Init -  63858  63212  647  0  2   66   78   254 0.753  17.00
 3.00 Prom -  77769  77730   40                              -3.96

 4.00 Prom +  85016  85055   40                              -2.16
 4.01 Sngl +  91301  91642  342  1  0   60   54   252 0.705  15.27
 4.02 PlyA +  92103  92108    6                               1.05

 5.07 PlyA -  92697  92692    6                               1.05
 5.06 Term - 100112  99998  115  1  1   64   48   116 0.629   3.24
 5.05 Intr - 100737 100655   83  0  2  117   70    18 0.457   1.34
 5.04 Intr - 102330 102289   42  0  0  126   98    29 0.744   6.14
 5.03 Intr - 102634 102589   46  0  1  101   88    72 0.998   6.91
 5.02 Intr - 110016 109860  157  1  1  148   96   134 0.996  19.27
 5.01 Init - 125507 125342  166  2  1   31   60   192 0.588   8.93
 5.00 Prom - 140170 140131   40                              -2.46

 6.11 PlyA - 142595 142590    6                               1.05
 6.10 Term - 143457 143258  200  1  2  112   55   281 0.986  24.76
 6.09 Intr - 144992 144778  215  1  2   81   75   373 0.361  33.66
 6.08 Intr - 149018 148540  479  2  2   84   47   272 0.067  14.55
 6.07 Intr - 151010 150910  101  0  2   65   65    51 0.392   0.33
 6.06 Intr - 168923 168791  133  2  1   74   76    58 0.041   3.42
 6.05 Intr - 183156 183012  145  2  1   69    6   112 0.012   1.38
 6.04 Intr - 187579 187443  137  1  2   69   73    54 0.085   1.37
 6.03 Intr - 191414 191340   75  2  0  104   89    30 0.363   4.41
 6.02 Intr - 198551 198480   72  2  0  104  105   -18 0.256   1.10
 6.01 Init - 206874 206797   78  0  0   81   88    43 0.412   4.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  83770  83657  114  1  0   83   38    97 0.953   2.77
S.002 Init -  84658  84596   63  1  0   45   82    81 0.832   2.35
S.003 Term - 149018 148509  510  2  0   84   43   278 0.808  17.27


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_1|126_aa
MVRIQRRKLLASCLCVTATVFLLVTLQVMVELGKFERKEFKSSSLQDGHTKMEEAPTHLN
SFLKKEGLTFNRKRKWELDSYPIMLWWSPLTGETGRLGQCGADACFFTINRTYLHHHMTK
AFLFYX

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_1|378_bp
atggtgcggattcagaggaggaagcttttggcatcttgcctgtgcgtcacagccaccgtc
tttctgcttgtcacactccaggtcatggttgagctggggaagtttgaaaggaaggagttt
aaaagttccagtttgcaagatggacatacaaaaatggaggaagcacctacgcatcttaat
tcatttcttaagaaagaaggattgaccttcaacaggaaaagaaaatgggaattggacagc
taccccattatgctctggtggtccccgctgacgggggagactgggaggttaggccaatgt
ggagcagatgcttgtttcttcaccatcaaccggacctacctccatcatcacatgaccaaa
gcattcctcttctatgnn

>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_2|389_aa
MQSDDVSLLRLFLHPGFAQGILPIFGHLENAYAAGLLPRAALDVRLPEPRFSNIGSHACL
AGVYCPLPRPGCEHRTPSPQPMGSMCPVLRAYQCRTSRHAVSCQLSAPDLGTKTQSFCRN
EYSLTGLCNRSSCPLANSQYATIKEEKGQCYLYMKVIERAAFPRRLWERVRLSKNYEKAL
EQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKKVERREKRREEK
ALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALEQQEAESDSSDTEEKDDDDDD
EEDVGKREFVEDGEVDESDISDFEDMDKLDASSDEDQDGKSSSEEEEEKALSAKHKGKMP
LRGPLQRKRAYVEIEYEQETEPVAKAKTT

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_2|1170_bp
atgcagtcggatgatgtgagtctcctccggttgttcttacacccggggtttgcgcaggga
attttgcccattttcggacacttagaaaacgcgtacgcagcgggtctgttgcctcgtgcc
gctctggatgtgaggcttccggaaccccgattttccaacataggttctcacgcgtgtcta
gcaggggtttactgcccgctgccccggccgggttgtgagcacaggactccgtcacctcag
cccatggggtcgatgtgtcccgtccttcgtgcctaccaatgcaggacgtcgcgtcatgct
gtcagctgtcagctgtcagctccggacttgggaaccaagactcagagcttctgccgaaat
gaatatagcctgactggactgtgtaatcggtcatcctgtcccctggcaaatagtcagtat
gccactattaaagaagagaaaggacagtgctacttgtatatgaaggttatagaacgagcg
gcttttcctcggcgtctctgggaacgggtccggcttagtaaaaactatgagaaagcactg
gagcaaatagatgaaaatctgatttactggccccgtttcattcgacacaaatgtaagcag
agattcaccaagatcacccaatacctaattcgaattagaaaacttacactaaagcgacag
aggaaacttgttcctttgagtaagaaggtggagcgtagggagaaaagaagagaggaaaag
gcattaatagctgctcagctggacaatgccattgagaaggaattactggagagactgaaa
caagatacgtatggcgacatctacaacttccccattcatgccttcgacaaagccctggaa
caacaggaggcagagagtgactcttcagatactgaggaaaaagatgatgatgatgatgat
gaggaagatgtggggaaaagagaatttgtcgaagatggtgaggtagatgagagtgacata
agtgattttgaggatatggataaactggatgccagcagtgatgaagatcaggatggtaaa
tcctccagtgaggaggaggaagaaaaggcccttagtgcgaaacacaaaggcaaaatgccc
ttgagaggaccactgcagagaaaacgagcctatgtggaaatagaatacgagcaggagaca
gagcccgtggccaaagccaaaaccacgtga

>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_3|480_aa
MELDSALEAPSQEDSNLSEELSHSAFGQAFSKILHCLARPEARRGNVKDAVLKDLGDLIE
ATEFDRLFEGTGARLRGMPETLGQVAKALEKYAAPSKEEEGGGDGHSEAAEKAAQVGLLF
LKLLGKVETAKNSLVGPAWQTGLHHLAGPVYIFAITHSLEQPWTTPRSREVAREVLTSLL
QVTECGSVAGFLHGENEDEKGRLSVILGLLKPDLYKESWKNNPAIKHVFSWTLQQVTRPW
LSQHLERVLPASLVISDDYQTENKILGVHCLHHIVLNVPAADLLQYNRAQVLYHAISNHL
YTPEHHLIQAVLLCLLDLFPILEKTLHWKGDGARPTTHCDEVLRLILTHMEPEHRLLLRR
TYARNLPAFVNRLGILTVRHLKRLERVIIGYLEVYDGPEEEARLKILETLKLLMQHTWPR
VSCRLVVLLKALLKLICDVARDPNLTPESVKSALLQEATDCLILLDRCSQGRVKKSLVED

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_3|1443_bp
atggagcttgacagcgctctggaagccccatcgcaggaagactctaatttgtccgaggag
ttgtctcactccgcctttggacaggccttctccaagattttacactgtcttgcccgcccg
gaggcacgacgaggcaatgtaaaagatgcagttcttaaagacctcggtgatctaatagaa
gccacagaatttgataggttatttgaggggactggtgcacggctccgcggaatgccggag
acactggggcaggtagcaaaagccctggagaagtatgcagccccctccaaggaggaggaa
ggtggaggtgatgggcactccgaagcggccgagaaagcagcccaagttgggttactgttt
cttaaactgttagggaaagttgagactgctaagaattccctggtcggccctgcatggcag
acgggcctgcatcacttggcaggacccgtttatatttttgccatcacacacagcttggag
caaccatggaccactccgagatctcgggaagttgctagggaggtgctcacctcactgctt
caagttactgaatgcggttctgtggcaggattcctacatggagaaaatgaagatgagaaa
gggagactttcggtgatactagggcttctcaaacccgacttgtataaggaatcctggaag
aataaccctgccatcaaacatgttttctcatggactctgcaacaggtcactcggccctgg
ctgagccagcatctggaaagggtacttcccgcatcattggtcatttcagatgactatcag
actgagaacaaaatcctgggtgtacactgtctccatcacattgtgcttaatgtgccagct
gctgatttgctccagtataacagagcccaggtcctataccatgccatttccaaccacctg
tacacaccagagcaccacctcattcaggctgtgctcctgtgtctgctggatttattcccc
atcctggagaaaaccctgcactggaaaggagatggagctcgacccaccacccattgtgat
gaggtcctgcggctgatcctgacccacatggagccagagcaccgccttcttttacgcagg
acctacgcaagaaacctgccggctttcgtgaacaggttggggatcctaactgtccggcac
ttaaagaggctggagagagtcatcattggttatctggaggtttatgatggacctgaggag
gaagctagactgaagatattggaaaccctaaaacttctcatgcaacatacttggcccaga
gtttcctgcagacttgtggtcttactgaaggccctcttgaaactgatttgtgatgtagca
agggatccaaaccttacacctgagtctgttaagagcgccctgctacaggaggccacagac
tgcctgattctcctggaccgctgttctcaaggacgggtaaagaaatctttagttgaagat
tga

>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_4|113_aa
MAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPRCRLETGIQGAFGKPQGTV
ARVHIGQVKSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISKKWGFTKFNVDE

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_4|342_bp
atggctgcaaacagcagctttcttggtggtgtacatggcctgtttcttgtatgggttgct
ctaagggtccttggagacaggcctttcaaatgtacgttcatgtctctgaccttgcactac
ccccgatgtaggctcgaaacaggcattcaaggtgcctttggaaagccccagggcactgtg
gccagggttcacattggccaagttaagtccatctgcaccaagctgcagaacaaggagcat
gtgattgaggcgccatgcagggccaagttcaagttccctggccaccagaagatccacatc
tccaagaagtggggctttaccaagttcaatgtggatgaatga

>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_5|202_aa
MGLRAVEQRVALVGEARAAQEPMEWVGGSGMAGCRSRALPCGKAAKARREIERSAGCFCG
LGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYG
YKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMC
NKPIASPSEATQNIGILLDELV

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_5|609_bp
atgggactgcgcgccgtggagcagagggtggcgctcgtcggggaagctcgggccgcacag
gagcccatggagtgggtgggaggctcaggcatggcgggctgcaggtcccgagccctgccc
tgtgggaaggcagccaaggcccggcgagaaatcgagcgcagcgccgggtgtttctgtggc
ctgggactggttagcaccaacaagtcctgctcgatgccacccatcagtttccaggacctt
ccgctcaacatctatatggtcatcttcggcacaggcatctttgtcttcatgctcagcctt
atcttctgctgctattttatcagcaaactgcggaaccaggcacagagtgagcgatacgga
tataaggaggtggtgcttaaaggtgatgccaagaagttacaattatatgggcagacctgc
gcagtctgtctggaagacttcaaggggaaggatgagttaggcgtgctcccgtgccaacac
gcctttcaccgcaagtgtctggtgaaatggctggaagttcgctgtgtctgccccatgtgt
aacaagcccattgctagtccctcagaggccacgcagaacattgggattctattggatgag
ctggtgtga

>gi568815590r:33448756_33658772|GENSCAN_predicted_peptide_6|544_aa
MEYYTAIKKNEILSFATTWMELEVIFGSPILWPQTSTSPWPVRNWAAQQEASAFLLSGIT
AAELEVEIVPGPSSSTLSQKSFPLENFPCQLHAAKTELTTGPSGYPGTNYPSGGITQALK
MEAAKAQGEIECSTGGPAQVEDPAHPPQLLAWVLSPLEPAASGAGRLLRAQTPETFLWTW
TSSLSQCQASPHRLRLKAHFGAKSASVDSQKASETAAATAAGASWPWRCLRRRSAFRTEA
QRSACKESQRAEQKELLQLEEKATPEGSCQSQAYLLSLENLLPKDQPREGKQLLWTHSSV
SHTPSSSSSSYLATEPIITTATPAAATVSATSKMCPGNWLWASMTFMARFSRSSSRSPVR
TRGTLEEMPTVQHPFLNVFELERLLYTGKTACNHADEVWPGLYLGDQDMANNRRELRRLG
ITHVLNASHSRWRGTPEAYEGLGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGK
ILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHRGIIPNRGFLRQLLALDRRLRQ
GLEA

>gi568815590r:33448756_33658772|GENSCAN_predicted_CDS_6|1635_bp
atggagtactatacagccattaaaaagaatgagattctgtcatttgccacaacatggatg
gaactggaagtcattttcgggtccccaatcctctggccacagaccagtaccagtccatgg
ccagttaggaactgggctgcacagcaggaggcttctgcctttttgctctcaggaattacc
gctgctgaactggaagtagagattgtccctggcccttcctcatcaacattatctcagaag
tccttccctcttgaaaactttccatgccagcttcatgctgccaagactgaattaactacc
ggaccttcaggataccctgggaccaactatccctctgggggcattacccaggctcttaaa
atggaggcagctaaggcccagggagaaattgagtgcagcaccggtgggccagcacaggtg
gaagacccggcacaccctccgcagctgctggcctgggtgctaagcccgttagagcccgcg
gccagcggggctggtcggctgctccgagctcagactccagaaacattcttatggacttgg
acatcaagcctatcccagtgccaggccagccctcacagactaaggctcaaggcccacttt
ggtgccaagtcagcttctgtggactcacagaaggcttcagaaacagcggcggcgacagca
gcaggagcgtcatggccgtggcgctgtctgcgccggcgatccgcctttcggactgaggcc
cagcgcagcgcttgcaaagagagccaaagagctgagcaaaaggagctgctgcagcttgaa
gaaaaagccacccctgaaggctcctgccagagccaggcttaccttctctccctcgagaat
cttctcccgaaggaccagcccagggaagggaagcagctgctctggactcactcaagtgtg
tctcacaccccttcctcttccagcagcagctacctggcaactgaacccatcatcaccaca
gccactcctgcagctgccacggtttctgccacctctaagatgtgccctggtaactggctt
tgggcttctatgacttttatggcccgcttctcccggagtagctcaaggtctcctgttcga
actcgagggaccctggaggagatgccaaccgttcaacatcctttcctcaatgtcttcgag
ttggagcggctcctctacacaggcaagacagcctgtaaccatgccgacgaggtctggcca
ggcctctatctcggagaccaggacatggctaacaaccgccgggagcttcgccgcctgggc
atcacgcacgtcctcaatgcctcacacagccggtggcgaggcacgcccgaggcctatgag
gggctgggcatccgctacctgggtgttgaggcccacgactcgccagcctttgacatgagc
atccacttccagacggctgccgacttcatccaccgggcgctgagccagccaggagggaag
atcctggtgcattgtgctgtgggcgtgagccgatccgccaccctggtactggcctacctc
atgctgtaccaccaccttaccctcgtggaggccatcaagaaagtcaaagaccaccgaggc
atcatccccaaccggggcttcctgaggcagctcctggccctggaccgcaggctgcggcag
ggtctggaagcatga