GENSCAN 1.0 Date run: 6-Nov-116 Time: 16:14:03 Sequence gi568815591r:152548645_152776079 : 227435 bp : 45.10% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.07 PlyA - 355 350 6 1.05 1.06 Term - 1973 1915 59 0 2 77 42 79 0.256 0.05 1.05 Intr - 7429 7349 81 2 0 100 98 23 0.370 4.11 1.04 Intr - 9146 9086 61 2 1 -1 86 106 0.350 -0.19 1.03 Intr - 16418 16275 144 2 0 97 39 46 0.569 1.08 1.02 Intr - 16918 16775 144 1 0 45 86 73 0.881 3.28 1.01 Init - 17004 16945 60 0 0 82 94 14 0.534 1.75 1.00 Prom - 21069 21030 40 0.94 2.05 PlyA - 23782 23777 6 1.05 2.04 Term - 26408 26239 170 0 2 93 50 95 0.690 4.24 2.03 Intr - 27633 27436 198 1 0 89 22 124 0.370 5.22 2.02 Intr - 58755 58699 57 1 0 59 116 57 0.049 4.46 2.01 Init - 81112 80395 718 1 1 33 40 334 0.302 18.13 2.00 Prom - 86937 86898 40 -3.26 3.05 PlyA - 87379 87374 6 1.05 3.04 Term - 98877 98633 245 1 2 -21 28 215 0.656 0.66 3.03 Intr - 100368 100159 210 1 0 41 56 162 0.111 7.18 3.02 Intr - 112138 112057 82 1 1 78 53 74 0.025 2.11 3.01 Init - 121181 121065 117 2 0 100 131 -16 0.015 4.10 3.00 Prom - 122267 122228 40 -3.56 4.00 Prom + 137174 137213 40 -3.26 4.01 Init + 151025 151089 65 1 2 95 77 63 0.914 6.57 4.02 Intr + 156283 156425 143 1 2 90 60 48 0.623 2.20 4.03 Intr + 180823 180945 123 2 0 41 101 49 0.004 2.06 4.04 Intr + 181545 181729 185 1 2 56 35 107 0.004 1.71 4.05 Intr + 186215 186269 55 1 1 98 94 16 0.013 1.75 4.06 Intr + 198584 198650 67 0 1 82 115 -17 0.611 -1.64 4.07 Intr + 200269 200887 619 1 1 67 53 324 0.239 19.12 4.08 Term + 200954 201094 141 1 0 -20 36 200 0.607 1.93 4.09 PlyA + 202369 202374 6 1.05 5.03 PlyA - 204268 204263 6 1.05 5.02 Term - 210685 210583 103 0 1 79 48 67 0.495 -0.45 5.01 Init - 211240 211092 149 1 2 68 18 222 0.498 10.76 5.00 Prom - 220927 220888 40 -3.26 Suboptimal exons with probability > 0.800 Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ S.001 Init + 121049 121107 59 1 2 110 107 5 0.953 5.38 S.002 Intr + 127408 127538 131 1 2 68 13 148 0.953 5.64 S.003 Term + 128593 128612 20 2 2 104 47 38 0.886 -0.22 S.004 Term + 208438 208536 99 0 0 60 43 96 0.815 0.43 Predicted peptide sequence(s): Predicted coding sequence(s): >gi568815591r:152548645_152776079|GENSCAN_predicted_peptide_1|182_aa MESGFPDMYAWGTKWSAIPQKLQANVWREEGRGRVEGFKGECAESVLSNDRRKHASITEN LVENDSNPRCQAVSCLGTCVVAIAMLRRFFLWFVTVAVFTIHIFLVFTNTWNYSTYGKNV KDSFTEEGVCIETRDWGLLTPESKRQGSLWIPSILISFCRVEKGKFKKENHSVKEHFFYQ QV >gi568815591r:152548645_152776079|GENSCAN_predicted_CDS_1|549_bp atggaatcggggttcccagacatgtatgcgtggggcacgaagtggagcgcgatcccgcag aagctgcaagctaacgtctggagggaagagggaagaggcagggtagaaggctttaaggga gaatgtgctgagagtgtcctgagcaacgacaggagaaaacatgccagcattaccgagaat ttagtggagaatgacagcaaccccaggtgccaggctgtttcctgtctcgggacttgtgtg gttgccattgctatgcttagaagatttttcctctggttcgtcaccgtggctgttttcacc atccacatcttcctagtgtttactaatacctggaattattctacgtatgggaagaacgtg aaggactccttcacggaggagggcgtttgcattgagacccgggattgggggctcctcaca ccagaaagcaaaaggcaagggagcctgtggattccgtccatactgatcagtttctgccgg gtggagaaaggcaagttcaagaaagagaaccattccgtgaaagagcacttcttctaccag caggtctag >gi568815591r:152548645_152776079|GENSCAN_predicted_peptide_2|380_aa MKKREKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRL NQEEVESLNRPITGSEIEAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEK EGILPNSFYEANIIPIPKPGRDTTKKENYRLISLMNINAKILNKILANRIQQHIKELIHH DQVGFIPGIQGWFNIHKSINIIQHINRTKNKNHMIVSIDAEKAFDKIQQPFKLKTLNKLA RIIGNHRTPQSFKLCQPKGLPTPGCSDPPTIRGRMVNTRKCFRIVRPSNNKRAYGKHSQM LSNSSLNGIINGLITLLSKLQLNIRFMAVLLSHCVNYRHSGKYLREEDLMEEAKPPTPRA FTCAPLRLSVASAFRALKAL >gi568815591r:152548645_152776079|GENSCAN_predicted_CDS_2|1143_bp atgaagaaaagagagaagaatcaaatagacacaataaaaaatgataaaggggatatcacc actgatcccacagaaatacaaactaccatcagagaatactataaacacctctacgcaaat aaactagaaaatctagaagaaatggataaattcctggacacatacaccctcccaagacta aaccaggaagaagttgaatccctaaatagaccaataacaggctctgaaattgaggcaata attaatagcctaccaaccaaaaaaagtccaggaccagacggattcacagccgaattctac cagaggtacaaggaggagctggtaccattccttctgaaactattccaatcaatagaaaaa gagggaatcctccctaactcattttatgaggccaacatcatcccgataccaaagcctggc agagacacaacaaagaaagagaattatagactaatatccctgatgaacatcaatgcaaaa atcctcaataaaatactggcaaaccgaatccagcagcacatcaaagagcttatccaccat gatcaagtgggcttcatccctgggattcaaggctggttcaacatacacaaatcaataaac ataatccagcatataaacagaaccaaaaacaaaaaccacatgattgtctcaatagatgca gaaaaggcctttgacaaaattcagcagcccttcaagctaaaaactctcaataaattagcc agaatcatcggcaaccacaggacacctcagtccttcaagctttgtcaacccaaaggcctc ccaactcccggctgctccgaccctccaacgatacgagggcgtatggtaaacactcgcaaa tgctttcgaatagtccgaccctccaacaataagagagcatatggtaaacactcgcaaatg ctttcgaatagttcactgaatggaataattaatggattaatcactctgctgagtaaattg cagctgaacataaggtttatggcggttctgctctcccactgtgttaattacaggcactct ggaaagtacctgcgggaagaggacctaatggaagaagcaaagccacccacacccagagcc ttcacctgtgctcctctcaggctttctgtggcttctgcttttagagctctaaaagccctc tga >gi568815591r:152548645_152776079|GENSCAN_predicted_peptide_3|217_aa MPGLPISFVENSNCVGYIFISLALTSVPGTYLTCMKCSPLLARLEGRSSLKEIEPNLFAD EDSPVHDRVNGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQTIMQKASSSSEEPSH ASRRLCDVDIDYRPYLLKILEDNPGSTIQDIGTGKDFMTKTPKTIATEAKIHKWDLIKLK SCTAKETIKRVNRQLTEWEKIVANYASEKGLKSSIYT >gi568815591r:152548645_152776079|GENSCAN_predicted_CDS_3|654_bp atgcctggcctccccatcagttttgttgaaaacagcaactgtgttggctacatctttata tccctagcacttacctcagttcctggaacatacttgacttgcatgaaatgttcaccgctc cttgcccgacttgaaggtagaagttccttgaaagaaatagaaccaaatctgtttgctgat gaagattcacctgtgcatgaccgcgtcaatggaggagaaagtgtgaacttacaggagtct actctgaggaaatgttctcagtgcttagagaagcttgtaaatgactatcgcctggttctt tttgcaacgacacaaactataatgcagaaagcctcgagctcatcagaagaaccttctcat gcctctcgacgactgtgtgatgtggacatagactacagaccttatctcttaaaaatcctg gaagacaacccaggcagtaccattcaggacataggcacaggcaaagatttcatgacgaag acgccaaaaacaattgcaacagaagcaaaaattcacaaatgggatctaattaaactaaag agctgcacagcaaaagaaactatcaagagagtaaacagacagcttacagaatgggagaaa attgttgcaaactatgcatctgagaaaggtctgaaatccagcatctatacgtaa >gi568815591r:152548645_152776079|GENSCAN_predicted_peptide_4|465_aa MALAITRGQQTWTGPQQLEGAWCALAIVPSTRSTLSAESKNCLAEKIKFMFECYIFVALR NKHFAFLAKGVKLQTFAVSVTALKAASGVVPSSRWAPGLAGLRTEAADLRDSGAQLASAS GSRTGAAGGAARQSCAVRSHSSALGWSMGLGAMEQGVVLVGEAGATQEPMEWTKVLGFRE NAEPAPGDSATTISVSVFHMWSKTILHLPVWPRVSGRGHRDAKTAAWTFDDHAVPGGTFC HCHSGPLSEECSLPRSRGIVGNKDLSPRQPHLAPLPPFPENGGKVRLGLILEEFLRFLYL KAGVTGPCVLGTGLILYALSKEIYVIIAETFSTISVVGLPVYAIKKYGASVAEFAGKLNE QKLAQLEEAKQAPIKQIRDGIDLEKSQQALVQKRHYLFDVQRNNIAMALEVTYQELLYKE QEHMINWVEKYVVQSISAQQEKETIAKCIEDLKLLAKKAQAQPAM >gi568815591r:152548645_152776079|GENSCAN_predicted_CDS_4|1398_bp atggcattggccatcaccagaggtcagcagacctggacagggccacagcagctggaagga gcttggtgtgctcttgccattgttccatctacaagaagcaccctttctgcagaaagtaaa aattgccttgctgagaaaattaaatttatgttcgagtgctatatctttgtggcactgagg aataagcattttgcatttctagcaaagggagtgaagctgcagaccttcgcggtgagtgtt acagctcttaaggcagcgtctggagttgttccttcttcccggtgggctcctggtcttgct gggctcaggactgaagctgcagatcttcgcgactcaggagcccagctggcttcagctagt ggatcccgcaccggggctgcaggtggagctgcccgccagtcctgcgccgtgcgctcgcac tcctcagcccttgggtggtcgatgggactgggtgccatggagcagggggtggtgctcgtc ggggaggctggggccacacaggagcccatggagtggacgaaagtattaggtttcagggag aatgcggaacctgccccaggtgactcagctactaccattagtgttagtgtatttcacatg tggtccaagacaattcttcatcttccagtgtggcccagagtctccggtcggggtcacagg gatgctaagactgctgcctggaccttcgatgaccacgctgtcccgggtggaactttctgc cactgccacagtggccccctctctgaagaatgcagccttcctaggtccaggggtattgtg ggcaacaaggacctttcacccaggcagccacaccttgcccctctaccaccttttcctgaa aatggaggaaaagttcgtcttggactgatccttgaggaattcctcaggtttctttatctt aaagccggtgtaacaggaccctgtgtgctcggaactgggcttatcttgtatgctttatcc aaagaaatatatgtgattattgcagagaccttctcgaccatatcagtagtagggttacct gtctatgcaattaaaaaatatggtgcctctgttgcagaatttgctggtaaactcaatgag caaaaacttgcccaactagaagaggcgaagcaggctcccatcaaacaaatccgggatgga attgatttggagaagtcacagcaggcactagttcagaagcgccattacctttttgatgtg cagaggaataacattgctatggctttggaggttacttaccaggaactactgtataaagaa caagagcacatgatcaattgggtggagaagtacgtggtgcagagcatctctgcacagcag gaaaaggagacaattgccaagtgcattgaagacctaaagcttctggcaaagaaggctcaa gcacagccagctatgtaa >gi568815591r:152548645_152776079|GENSCAN_predicted_peptide_5|83_aa MLGTRGARPRRQPESAPSPSAPPPASPARSVSREPPQRRCREPGCSAADTIGLESVLITI DEQQVLSTVFGVPVEVPKCLLND >gi568815591r:152548645_152776079|GENSCAN_predicted_CDS_5|252_bp atgctcgggacgcgcggcgctcggccccgccggcagcccgagagcgccccgtcgccgtcc gctccgccgcccgctagccccgcgcgcagcgtctcccgcgagccgccgcagcgccgctgc cgggagcccggatgctcggcggccgacacgatagggcttgagtctgtcttaatcactatt gatgagcagcaggtgcttagcacagtatttggtgtacctgtggaagtgcccaaatgtttg ttgaatgactga