GENSCAN 1.0	Date run:  8-Nov-116	Time: 13:32:17

Sequence gi568815591r:140235415_140482526 : 247112 bp : 46.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    753    882  130  1  1  108   79    60 0.596   6.85
 1.02 Intr +  29604  29746  143  0  2   34   34    98 0.033  -1.00
 1.03 Term +  30021  30133  113  1  2   80   45    86 0.564   2.22
 1.04 PlyA +  31001  31006    6                               1.05

 2.02 PlyA -  31468  31463    6                               1.05
 2.01 Sngl -  36048  35854  195  0  0   97   38   189 0.612   8.09
 2.00 Prom -  39891  39852   40                              -4.06

 3.00 Prom +  40312  40351   40                               1.54
 3.01 Init +  43694  43763   70  1  1   93   48    55 0.186   3.29
 3.02 Intr +  46352  46536  185  0  2   59   28    71 0.058  -2.29
 3.03 Intr +  57287  57541  255  1  0  124   46   235 0.889  20.54
 3.04 Intr +  59799  59891   93  2  0  -28   75   153 0.175   2.56
 3.05 Intr +  74781  74804   24  2  0  114   89     9 0.150   1.82
 3.06 Intr +  79783  79919  137  0  2   65  119    47 0.254   4.87
 3.07 Term +  81096  81129   34  0  1   67   48    49 0.178  -4.14
 3.08 PlyA +  82071  82076    6                               1.05

 4.16 PlyA -  87410  87405    6                               1.05
 4.15 Term -  88057  88020   38  2  2   85   32    59 0.095  -2.50
 4.14 Intr -  88778  88634  145  2  1   69   57    90 0.129   3.86
 4.13 Intr -  95001  94859  143  1  2   87   53   118 0.915   8.27
 4.12 Intr - 101935 101866   70  1  1   93   25     9 0.009  -6.15
 4.11 Intr - 108149 107998  152  0  2   70   94   124 0.990  11.08
 4.10 Intr - 109849 109802   48  2  0  117   96    61 0.997   8.45
 4.09 Intr - 110556 110455  102  1  0   19   72    89 0.575   0.55
 4.08 Intr - 113353 113212  142  1  1   61   57   152 0.995   9.33
 4.07 Intr - 116037 115859  179  1  2   86  107    73 0.993   8.64
 4.06 Intr - 116732 116648   85  2  1   79   73    93 0.990   6.29
 4.05 Intr - 120350 120254   97  1  1   91   92   -31 0.853  -2.39
 4.04 Intr - 123371 123226  146  2  2   97   67   180 0.959  15.88
 4.03 Intr - 134268 134176   93  0  0   93  103    38 0.972   5.96
 4.02 Intr - 144976 144868  109  0  1   94   99    54 0.987   7.39
 4.01 Init - 147112 147024   89  1  2   87  115   -45 0.644  -1.67
 4.00 Prom - 147756 147717   40                              -5.06

 5.00 Prom + 159991 160030   40                              -2.96
 5.01 Init + 161388 161413   26  2  2   63   80    13 0.282  -3.79
 5.02 Intr + 162891 163101  211  0  1   45   54   137 0.103   4.92
 5.03 Intr + 168654 168803  150  2  0   67  115    50 0.105   5.96
 5.04 Intr + 172221 172433  213  2  0   48   77   159 0.246   9.71
 5.05 Intr + 176460 176643  184  2  1  115   52   306 0.697  29.06
 5.06 Term + 190468 190736  269  2  2   86   44   373 0.553  28.36
 5.07 PlyA + 195285 195290    6                               1.05

 6.02 PlyA - 195745 195740    6                              -0.45
 6.01 Sngl - 200241 199900  342  0  0   62   54   211 0.817  11.30
 6.00 Prom - 204500 204461   40                              -4.66

 7.11 PlyA - 205404 205399    6                               1.05
 7.10 Term - 211419 211307  113  1  2   51   49   167 0.411   7.82
 7.09 Intr - 219315 219189  127  0  1   97   75   183 0.203  18.15
 7.08 Intr - 219819 219681  139  2  1   68   60    70 0.989   2.67
 7.07 Intr - 220486 220376  111  0  0   54   64   104 0.894   4.09
 7.06 Intr - 221452 221238  215  1  2   82   50   315 0.996  24.61
 7.05 Intr - 223819 223593  227  2  2   64  106   218 0.805  18.90
 7.04 Intr - 224522 224293  230  1  2   80   86   103 0.930   6.81
 7.03 Intr - 236597 236469  129  1  0  106  110    61 0.994   9.91
 7.02 Intr - 243572 243513   60  1  0   70   62    78 0.614   1.25
 7.01 Init - 243930 243746  185  0  2   79   91   162 0.962  12.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_1|128_aa
XHSCPHSDRRRNGQGCCWSTQYLCANQKKRLLLLAAVAQHLGAQCSEGGAPAATLLIKAG
HQPSPDSQKRVTPRTCGFLESTKVPSPTHDLAMRKLKHRAIERFAQVVASDFAPLTTKLY
GLVLSHWA

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_1|387_bp
ngacacagctgcccccatagtgaccgacgcaggaacggacagggctgctgctggtccaca
cagtacctttgtgcaaatcagaaaaaaaggttactcctgctggctgctgtagcccagcac
ctaggagcacagtgttctgaaggaggagctcctgctgccacactgctgattaaagccggt
catcagcccagtccagattcacagaagcgtgtgactcccaggacatgtggcttcttggag
agcaccaaggttcccagtcctacccatgatctagcgatgaggaagctgaagcatagagct
attgagcgatttgcccaggtagtggcttcagactttgcgcccttaaccactaagctctac
ggtctggtgctgtcacactgggcatga

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_2|64_aa
MPEPQRPPAMGSCAAPASPTSTAPCSTAPSSIDHPRAVECGCTAQDWQAAPPATRVRDPL
DEAS

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_2|195_bp
atgcctgagcctcagcgccctccagccatgggctcctgcgcggccccagcctccccgacg
agcaccgccccctgctccacggcgcccagttccatcgaccacccaagggctgtggagtgc
gggtgcactgcacaggactggcaagcagctccacctgcgacccgggtgcgggatccactg
gatgaagccagctag

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_3|265_aa
MTGRSLRPPQKQMLLCFLYSLQNSVSTSEYHTPVDSPLRAHRACHADVLQARSLSILPQL
HDCRFPIMPLRKKFWHLSYELTSTPSPCQAATLSRQPERRAKAASTASHRPIKGILKNRT
STTLYGCVGRRRAEKKSRKWDEMNFLATYHPADKDCGFMNTDEPNTPLTMGLDVLKKPVP
IVMELPHLAQELEKLKEDQGKKCRFTETQHACSAATGKGKQERSEAVHSCTPTQSHGFLD
KSPNLDVCSVLARCCSWKSLIGNRN

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_3|798_bp
atgactggaagatccctgaggcctccccagaagcagatgctgctatgcttcctgtacagc
ctgcagaactccgtgagcacttctgagtaccacacgcctgtagacagccctctacgtgca
caccgagcttgccatgcagatgtgcttcaagccaggtctcttagcatcctcccacaactg
cacgactgccgctttcccatcatgcctcttagaaagaaattctggcacctgtcctatgag
ttaaccagtactccaagcccatgccaagcagcgaccctgagccgacagccggagcgccgg
gcaaaggccgcctcaacagcctcgcaccggcccatcaaggggatcctgaagaacaggact
tctacgactctctatggttgcgtcggcagaagaagagctgagaaaaaatcccggaagtgg
gatgaaatgaacttcctggcaacatatcatccagcagacaaagactgtggcttcatgaac
actgatgaaccaaacactccccttaccatgggtctggatgtcctgaagaagccagtgccc
attgtcatggagctgccccatctggcccaggagttggagaagctgaaggaggatcagggg
aagaaatgcaggttcacagaaacacagcatgcgtgctctgcagcaacagggaagggaaaa
caggaacgctctgaagcagtacattcctgcacacccacacagagccatggcttcctagac
aagtccccgaacctagatgtctgcagtgtcctggcacgctgctgttcttggaagtcactg
attggaaaccggaactga

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_4|545_aa
MAWPNVFQRGSLLSQFSHHHVVVFLLTFFSYSLLHASRKTFSNVKVSISEQWTPSAFNTS
VELPVEIWSSNHLFPSAEKATLFLGTLDTIFLFSYAVVFVFGALTEWLRFYNKWLYCCLW
IVNGLLQSTGWPCVVAVMGNWFGKAGRGVVFGLWSACASVGNILGACLASSVLQYGYEYA
FLVTASVQFAGGIVIFFGLLVSPEEIGLSGIEAEENFEEDSHRPLINGGENEDEYEPNYS
IQDDSSVAQVKAISFYQACCLPGVIPYSLAYACLKLVNYSFFFWLPFYLSNNFGWKEAEA
DKLSIWYDVGGIIGGTLQGFISDVLQKRAPVLALSLLLAVGSLIGYSRSPNDKSINALLM
TVTGFFIGGPSNMISSAISADLGRQELIQRSSEALATVTGIVDGSGSIGAAVGQYLVSLI
RDKLGWMWVFYFFILMVRRCTPAINGRRLSALPRFSDYVGFECILLSSGSWQPRQLSLRA
QRQRTNSLVNGTFAVLFRCLDTESDSLTCWIKCEILHESSSLAIKSETDQRPVIYSQSYV
TITTI

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_4|1638_bp
atggcctggccaaatgtttttcaaagagggtctctgctgtcccagttcagccatcatcat
gttgtagtgttcctgctcactttcttcagttattcgttgctccatgcttcacgaaaaaca
tttagcaatgtcaaagtcagtatctctgagcagtggaccccaagtgcttttaacacgtca
gttgagctgcctgtggagatctggagcagcaaccatttgttccccagtgcagagaaagcg
actcttttcctcggcacactggataccattttcctcttctcctatgctgtggtgtttgtc
tttggtgcgctcacagaatggctgcgtttctacaacaaatggctgtactgctgcctgtgg
attgtgaacggcctgctgcagtccactggttggccctgtgtggttgctgttatgggcaac
tggtttgggaaagccggacgaggagttgtttttggtctctggagtgcctgtgcttcggtg
ggcaacattttgggagcgtgcctagcttcttctgttcttcagtatggttatgagtatgcc
tttctggtgacggcgtctgtgcagtttgctggtgggatcgttatcttctttggactcctg
gtgtcaccagaagaaattggtctctcgggtattgaggcagaagaaaactttgaagaagac
tcacacaggccattaattaatggtggtgaaaatgaagacgaatatgagccgaattattca
atccaagatgatagttctgttgcccaagtcaaggcgataagcttctaccaggcatgttgc
cttcctggagtcataccgtactcactggcctacgcctgcttgaagttagtgaattactcc
ttcttcttctggctccccttttatctgagtaacaacttcggctggaaggaggcggaagcc
gacaagctgtccatttggtacgacgttggagggatcataggtggaactttgcaaggcttc
atctctgatgtactacagaagagagcgccggttcttgccctgagtctgcttctggcagtt
gggtccctcatcgggtatagtcgttctccaaatgataagtccatcaatgcccttctgatg
actgttacaggattttttattggtggaccttctaatatgattagttctgctatttctgcg
gacttgggtcgccaggagctcatccaaaggagcagtgaagctttggccactgtcacagga
attgtggatggttcggggagcattggagctgcagtgggccagtatttagtgtctctgatc
cgggacaagctaggatggatgtgggttttctactttttcattctcatggtaagacgctgc
acgcctgcaattaatggccgcagactgtcggcgctgcccaggttctcggactacgtgggt
tttgagtgcattctcctctcctctggctcttggcagcctcgccagctctccctgagggct
cagcggcagcgaacaaatagtcttgttaacgggacttttgcggtgttattccgctgctta
gacaccgagagtgactctcttacttgctggattaagtgtgagatcctgcacgaatcctca
tctctagctataaaatctgagacagaccagagacctgttatttattcgcagagttatgtg
accatcaccactatctaa

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_5|350_aa
MVSFKRQARGAATYISPPPSRPGKPLGLDPPPPQQVFGPTHHRLRTRDPQWSPLSSPGSA
RRVSLAPLPASPAASSPLADAKPDTWGQNYTSHQAARQEEEGGTGGLKSKPRRKRKHYLL
TSRGERARQVARTMHFSSSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQ
NTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFES
IPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKN
IEEVFVLMAKELIARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_5|1053_bp
atggtgtcattcaagagacaagccaggggggccgccacctacatctccccaccgccctcc
cgacccgggaagcccctcggattggacccgcccccgccccagcaggtcttcggccccacg
catcaccgcttgcgcacccgagatccgcagtggtcgccgctctccagccccggctccgct
cgccgggtcagcttggctccgctgcccgcctcccccgccgccagctcacccctggcggac
gccaaacccgacacctggggccagaactacacttcccaccaagcagcgaggcaggaggaa
gaagggggcactggggggctgaaaagcaaacccagaagaaagcgaaaacattacctgctg
accagcagaggtgagagagcgagacaggtggcaagaaccatgcacttctccagctcagcc
agggcagcagatgagaactttgactatttgttcaagattatcctcattggggattccaat
gtggggaagacgtgtgtggtgcagcatttcaagtctggagtctacactgagacacagcag
aacacgattggagtggactttaccgtgcgttcccttgatattgacggcaaaaaagtgaag
atgcaggtgtgggacacagctggccaggagcgcttccgcaccatcacccaaagctactac
cgcagtgcccacgcagccatcatcgcctatgacctcacccggcggtccacgttcgagtcc
atccctcactggattcatgagatagagaaatatggagctgcaaatgtggtcattatgctg
attggaaataaatgtgacctctgggaaaagcggcacgtcctgttcgaggatgcctgcaca
ctggctgagaagtacggcctcctggccgttttggagacatctgccaaggagtcaaagaac
atagaagaagtcttcgtgctcatggccaaggagctgatcgcgcgcaacagcctgcaccta
tatggggagagtgccctgaacggcctccccctggactccagccccgttcttatggcccag
ggtccaagtgaaaagacccactgcacttgctaa

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_6|113_aa
MGHSGGSWGTGSSALRGGFTLVGKDAGAQRVLAGHREGPRGPAGEALLPKACEGSSVVPR
PGTIQGDFSAHISRNFFQASNSVEGARRWIPLWLPSRDLVSWARRQHSRSHPA

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_6|342_bp
atggggcacagcggcggctcgtgggggacgggatccagcgctttgagaggtggcttcacg
ctggtggggaaggacgcaggcgcacagcgcgtccttgccgggcaccgcgagggcccgcga
gggcccgcgggggaagccctgctacccaaggcctgcgaagggtccagtgtggtcccgcgc
cccgggaccatacagggagatttcagcgcccacatcagcaggaacttcttccaggcaagc
aactccgtggaaggggctcggagatggatcccgctgtggctcccgagcagggacctggtg
agctgggcacggcgccagcacagccgcagccacccagcctga

>gi568815591r:140235415_140482526|GENSCAN_predicted_peptide_7|511_aa
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
CSHCVNPRWAAEPSALSAEAWRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIY
GDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG
AGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVG
ECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMV
CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF
VIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP
QRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAAFISTS
FLSMDGQCFIAGVLNPRTVYKYQYEYQSVAC

>gi568815591r:140235415_140482526|GENSCAN_predicted_CDS_7|1536_bp
atggcggaggctgcaactcccggaacaacagccacaacatcaggagcaggagcggcagcg
gcgacggcggcagcagcctcccccaccccgatccccacagtcaccgccccgtccctgggg
gcgggcggagggggcggcggcagcgacggcagcggcggcggctggactaaacaggtcacc
tgcagtcactgcgtcaacccccgctgggccgcggagccctcagcgctgtccgcggaggcc
tggcggtattttatgcatggggtttgtaaggaaggagacaactgtcgctactcgcatgac
ctctctgacagtccgtatagtgtagtgtgcaagtattttcagcgagggtactgtatttat
ggagaccgctgcagatatgaacatagcaaaccattgaaacaggaagaagcaactgctaca
gagctaactacaaagtcatcccttgctgcttcctcaagtctctcatcgatagttggacca
cttgttgaaatgaatacaggcgaagctgagtcaagaaattcaaactttgcaactgtagga
gcaggttcagaggactgggtgaatgctattgagtttgttcctgggcaaccctactgtggc
cgtactgcgccttcctgcactgaagcacccctgcagggctcagtgaccaaggaagaatca
gagaaagagcaaaccgccgtggagacaaagaagcagctgtgcccctatgctgcagtggga
gagtgccgatacggggagaactgtgtgtatctccacggagattcttgtgacatgtgtggg
ctgcaggtcctgcatccaatggatgctgcccagagatcgcagcatatcaaatcgtgcatt
gaggcccatgagaaggacatggagctctcatttgccgtgcagcgcagcaaggacatggtg
tgtgggatctgcatggaggtggtctatgagaaagccaaccccagtgagcgccgcttcggg
atcctctccaactgcaaccacacctactgtctcaagtgcattcgcaagtggaggagtgct
aagcaatttgagagcaagatcataaagtcctgcccagaatgccggatcacatctaacttt
gtcattccaagtgagtactgggtggaggagaaagaagagaagcagaaactcattctgaaa
tacaaggaggcaatgagcaacaaggcgtgcaggtattttgatgaaggacgtgggagctgc
ccatttggagggaactgtttttacaagcatgcgtaccctgatggccgtagagaggagcca
cagagacagaaagtgggaacatcaagcagataccgggcccaacgaaggaaccacttctgg
gaactcattgaggaaagagagaacagcaacccctttgacaacgatgaagaagaggttgtc
acctttgagctgggcgagatgttgcttatgcttttggctgcagcatttatcagtacttca
tttctttcaatggatggacagtgttttattgcaggggtcctcaaccctcggaccgtgtac
aagtaccagtacgagtaccaatccgtggcctgttag