GENSCAN 1.0	Date run:  6-Nov-116	Time: 16:49:53

Sequence gi568815592f:45322577_45647302 : 324726 bp : 39.76% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  22359  22391   33  2  0   85  105    43 0.735   4.31
 1.02 Intr +  64864  64960   97  0  1   42   81    58 0.014  -0.84
 1.03 Intr +  72300  72358   59  1  2  125   83    38 0.046   4.68
 1.04 Term +  97619  97756  138  1  0   74   49   168 0.950   8.48
 1.05 PlyA +  97864  97869    6                               1.05

 2.00 Prom +  98317  98356   40                              -2.65
 2.01 Init + 100001 100381  381  1  0   46  116   754 0.948  70.92
 2.02 Intr + 101575 101828  254  0  2   30   91   263 0.387  16.11
 2.03 Intr + 103796 103841   46  2  1    5   97    17 0.274  -8.21
 2.04 Intr + 109287 109443  157  2  1   92   92   207 0.522  20.16
 2.05 Intr + 115371 115475  105  1  0  109  100    20 0.261   4.57
 2.06 Intr + 116039 116121   83  0  2   64   74    11 0.028  -4.26
 2.07 Intr + 126241 126357  117  0  0  107   96    44 0.146   6.84
 2.08 Term + 138756 139124  369  2  0   68   49   238 0.967  11.56
 2.09 PlyA + 139470 139475    6                               1.05

 3.00 Prom + 151007 151046   40                              -6.65
 3.01 Init + 151348 151404   57  0  0  113   44    64 0.529   5.89
 3.02 Intr + 161278 161442  165  0  0   -2  111   109 0.552   3.44
 3.03 Intr + 162385 162563  179  0  2   98   25    68 0.215  -0.70
 3.04 Intr + 167748 167805   58  0  1  125   52    41 0.073   2.17
 3.05 Intr + 168942 169041  100  2  1   81  -34    91 0.079  -5.04
 3.06 Intr + 169365 169538  174  1  0   81  110    72 0.405   7.69
 3.07 Intr + 183037 183134   98  2  2  112   55    45 0.053   2.41
 3.08 Intr + 183620 183698   79  1  1  102   65    20 0.151  -0.69
 3.09 Intr + 189670 189831  162  2  0   98  103   134 0.890  14.93
 3.10 Term + 224251 224729  479  2  2   93   44   295 0.974  19.62
 3.11 PlyA + 226845 226850    6                               1.05

 4.08 PlyA - 226969 226964    6                               1.05
 4.07 Term - 234582 234467  116  1  2  106   49    59 0.377   1.55
 4.06 Intr - 235759 235633  127  1  1   62   74    59 0.563   1.23
 4.05 Intr - 235926 235808  119  1  2   61  116    78 0.767   7.16
 4.04 Intr - 246954 246854  101  2  2   90   71    50 0.002   2.33
 4.03 Intr - 250994 250803  192  1  0   27  113   240 0.032  18.09
 4.02 Intr - 255810 255696  115  1  1   83   95    15 0.041   0.29
 4.01 Init - 260500 260410   91  1  1   72  113    58 0.583   7.40
 4.00 Prom - 264730 264691   40                              -4.35

 5.00 Prom + 272720 272759   40                              -3.95
 5.01 Init + 278550 278604   55  2  1   48   88    93 0.621   6.80
 5.02 Term + 286855 287066  212  2  2   56   42   240 0.802  12.67
 5.03 PlyA + 287809 287814    6                               1.05

 6.12 PlyA - 289303 289298    6                               1.05
 6.11 Term - 293265 293159  107  1  2   86   42   130 0.461   5.79
 6.10 Intr - 294519 294353  167  2  2   61   38    52 0.539  -3.82
 6.09 Intr - 295013 294922   92  2  2   90   65    31 0.586  -1.13
 6.08 Intr - 295943 295770  174  2  0   89   45   122 0.695   7.21
 6.07 Intr - 303265 303206   60  1  0   56   95    46 0.013   0.11
 6.06 Intr - 306967 306821  147  1  0   60   44   108 0.042   3.11
 6.05 Intr - 307714 307554  161  2  2   72   89    79 0.042   5.19
 6.04 Intr - 318591 318476  116  2  2   45   87    56 0.046   0.37
 6.03 Intr - 320105 319799  307  0  1   26   98   138 0.135   3.18
 6.02 Intr - 321122 320951  172  2  1   30   77   123 0.281   3.99
 6.01 Intr - 324125 323972  154  1  1   30   53   162 0.746   6.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  79448  79257  192  2  0   39   43   127 0.870  -0.26
S.002 Init -  81986  81789  198  2  0    2   98   152 0.913   6.55
S.003 Term + 207925 208080  156  0  0   57   55   167 0.941   7.25


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_1|108_aa
MDYALKPSFILIRPRNILARICVGTAEAKGDNEMPETVHKTMRRSLRAFFPDLYPENLVG
LLERGDPESRNHSPPSSSCTRKGSRVRDWHQAPIFRAPHALRALPGPF

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_1|327_bp
atggactatgctctgaagccaagcttcattctgattcggcctagaaacattctcgcaaga
atctgtgtgggcacagcggaagccaaaggagacaatgaaatgcccgagacagtgcataaa
acaatgagaagaagcttgagagcatttttccctgatctttatcctgagaacctagtggga
ctcctggagcggggcgatcccgagtcacgcaaccacagccccccaagctcatcttgtact
cgaaagggctccagagtccgcgactggcaccaggcccccatcttccgtgcccctcatgct
ctcagagcccttccaggccccttctag

>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_2|503_aa
MRIPVDPSTSRRFSPPSSSLQPGKMSDVSPVVAAQQQQQQQQQQQQQQQQQQQQQQQEAA
AAAAAAAAAAAAAAAVPRLRPPHDNRTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNK
TLPVAFKFEGGWQPRESQAGAPQVEVLGSGASHSSPMALHNPIQISRGSPLQGGDAEPPG
PSAHWVDGETGSQAVHTRRTVHTRKTPGMQGCDKEVICKFSSLADGQVVALGEVPDGTVV
TVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYH
RAIKVTVDGPREPRNRVKPRLNPSWFICLSGHPEGFTGNQFQDWPRKLLVGKDGPFKEMM
KVPNAGCSTRSEEKYRCVKRRKCSSVVKQQRYFDLVGKTRGTKYTEDVEGKGCIEAKKPA
GKVLAQPQCDETQEIYMPFKVSINIMEKESAKGRNVLRWGNTHEMSLKSIDKNIKHLLCT
IAVLGTSLGTLLSSVLSMDYKHA

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_2|1512_bp
atgcgtattcccgtagatccgagcaccagccggcgcttcagccccccctccagcagcctg
cagcccggcaaaatgagcgacgtgagcccggtggtggctgcgcaacagcagcagcaacag
cagcagcagcaacagcagcagcagcagcagcaacagcagcagcagcagcaggaggcggcg
gcggcggctgcggcggcggcggcggctgcggcggcggcagctgcagtgccccggttgcgg
ccgccccacgacaaccgcaccatggtggagatcatcgccgaccacccggccgaactcgtc
cgcaccgacagccccaacttcctgtgctcggtgctgccctcgcactggcgctgcaacaag
accctgcccgtggccttcaagtttgagggcgggtggcagccgcgggagtcgcaggcaggt
gctccgcaggttgaggttttaggatctggagcctctcacagtagcccgatggctctccat
aacccgatccagatttcccggggtagccctctacaggggggagacgcggagcccccaggg
cccagcgcacactgggttgatggggaaacgggttcccaggctgtccacactcgcaggact
gtccacactcgcaagacgccagggatgcaggggtgtgacaaagaagtaatttgcaaattc
agctcattagctgatggtcaggtggtagccctcggagaggtaccagatgggactgtggtt
actgtcatggcgggtaacgatgaaaattattctgctgagctccggaatgcctctgctgtt
atgaaaaaccaagtagcaaggttcaacgatctgagatttgtgggccggagtggacgaggc
aagagtttcaccttgaccataaccgtcttcacaaatcctccccaagtagctacctatcac
agagcaattaaagttacagtagatggacctcgggaacccagaaatagagtcaaaccacgt
ttaaatccatcttggtttatttgtctgtctggacatccagaaggtttcaccggcaatcag
tttcaggattggcccaggaaattattagtaggcaaagatgggcccttcaaggagatgatg
aaggtaccaaatgcaggttgttctacaagaagtgaggagaaatatagatgtgtaaaaaga
aggaagtgctccagtgttgtgaagcaacagagatattttgatttggtggggaaaacaaga
ggaaccaaatatacggaagacgtagaagggaagggatgtatagaggcaaagaagccagct
ggaaaagtactcgcacaaccccagtgtgatgagacccaggaaatatatatgccatttaaa
gtcagtatcaacatcatggagaaggaaagtgcaaaaggaaggaatgtcttaagatgggga
aacactcatgaaatgagtctgaagtcaatcgacaagaatattaagcacctactatgtacc
attgctgttcttggcactagtctgggcactcttctaagctctgttctaagcatggactac
aaacatgcttaa

>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_3|516_aa
MVTRSWKEAGSAAAAPPLQTSVSRAQAGSSTVVAIGNESDNAYCDHIFQVLICWAQGALF
NSIDNGRQLKGFEQGSLSQHSETVTSCGLSPRVLDQTLFNHILGDSKISSCLPSYPSLPV
KSECMVDEAHGLPKSSPSVIADAQKLALAGNRVLCDIVANMHGLSELSEGISSIMKQANT
PNTHLSWHRQKLDDSKPSLFSDRLSDLGRIPHPSMRVGVPPQNPRPSLNSAPSPFNPQGQ
SQITGLHKGLSPFLPDERQLETEEPPLSQLAFLSTPWGPQEQPWSSALFSSLACSHFDQS
HPVYPRQAQSSPPWSYDQSYPSYLSQMTSPSIHSTTPLSSTRGTGLPAITDVPRRISGAS
ELGPFSDPRQFPSISSLTESRFSNPRMHYPATFTYTPPVTSGMSLGMSATTHYHTYLPPP
YPGSSQSQSGPFQTSSTPYLYYGTSSGSYQFPMVPGGDRSPSRMLPPCTTTSNGSTLLNP
NLPNQNDGVDADGSHSSSPTVLNSSGRMDESVWRPY

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_3|1551_bp
atggtcaccaggtcctggaaagaagcaggctcagctgccgcagcaccgccacttcagacc
agtgtgagtagagcacaagctgggagcagtacagttgtagccattggaaatgagagtgac
aacgcatattgcgaccatattttccaggtccttatttgctgggctcagggggctctattt
aattcaatagacaatggaagacaattgaaaggttttgagcagggatcattgtcacaacat
tctgaaactgttacatcctgtggcttgagccctagagtattggaccagactttattcaat
cacatacttggtgacagcaaaattagctcatgtctccccagttacccctctcttccagtg
aagtctgaatgcatggtggatgaggctcatggactgccaaagtctagtccttctgttata
gcagatgcccaaaaacttgcactggcaggaaatagggtgctttgtgacattgtggctaac
atgcacggactctctgaactttcagaggggatttcctccatcatgaaacaagcaaacacc
cccaatacacatctctcctggcacagacagaagcttgatgactctaaacctagtttgttc
tctgaccgcctcagtgatttagggcgcattcctcatcccagtatgagagtaggtgtcccg
cctcagaacccacggccctccctgaactctgcaccaagtccttttaatccacaaggacag
agtcagattacaggtttacataaagggttgtctccatttttgcctgatgaaaggcaactt
gagacagaggaaccacccctctcccaactagcatttttgagcaccccctggggcccgcag
gagcagccctggtcctctgctttgttctcttctctcgcatgtagtcattttgatcaatca
catcctgtctaccccaggcaggcacagtcttccccgccgtggtcctatgaccagtcttac
ccctcctacctgagccagatgacgtccccgtccatccactctaccaccccgctgtcttcc
acacggggcactgggcttcctgccatcaccgatgtgcctaggcgcatttcaggtgcttca
gaactgggccctttttcagaccccaggcagttcccaagcatttcatccctcactgagagc
cgcttctccaacccacgaatgcactatccagccacctttacttacaccccgccagtcacc
tcaggcatgtccctcggtatgtccgccaccactcactaccacacctacctgccaccaccc
taccccggctcttcccaaagccagagtggacccttccagaccagcagcactccatatctc
tactatggcacttcgtcaggatcctatcagtttcccatggtgccggggggagaccggtct
ccttccagaatgcttccgccatgcaccaccacctcgaatggcagcacgctattaaatcca
aatttgcctaaccagaatgatggtgttgacgctgatggaagccacagcagttccccaact
gttttgaattctagtggcagaatggatgaatctgtttggcgaccatattga

>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_4|286_aa
MNDQNAQIQSHHQVMESAFPAHERKKSEAQGTQTRPALKLLCLRCSRLSFHRKPVRSHGI
SRLPLYSHCNSQGPMMKLPSEAQVCLARTQEDHGSMPMRMAAKSEAFYDLDSWLREGAYR
NGEKSENFAEAARPLECPDLTQHFALKISEGFKGSSLDSIQTMFLLGFCTPTQSLAQIRG
STSDVRELGSAPLSDCKEDPRAIHRKLDEANAAKLSAIITFSVTLFTQNTTYLHGKPWKR
LQIEDWDGGLGSKAPRNDWKTTLCRPLPQGTPALQEGPSGQHLEVA

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_4|861_bp
atgaatgatcagaatgcccaaatccagagtcatcatcaagtgatggagtcagcatttcct
gcacatgagagaaaaaaatctgaagctcaaggtactcagacacgaccagccctgaagctt
ttgtgcctgcgctgctccagacttagcttccacaggaagcccgtccgttcccatggcatt
agccgacttccactctactctcactgcaatagccagggccccatgatgaagctgccatca
gaagcacaggtgtgcctggcaaggacacaggaggaccacggctccatgccgatgagaatg
gcagctaagtctgaagctttctatgatttagattcctggttgcgagagggagcctatagg
aatggcgagaagagtgagaactttgcagaggcagcaaggcctcttgaatgccctgacctc
acccagcactttgctctgaagatctctgagggcttcaaaggctcctctttggattcaata
caaacgatgttccttctgggcttctgcacaccaacacaaagccttgcccagatcaggggt
tccacttcagatgtgagggaactgggtagtgcccctttgtcagattgcaaggaggacccc
agagccattcatagaaagttagatgaagccaatgctgccaaattaagtgcaataataaca
ttttcagtgacattgttcacacaaaacacaacatacctacatggaaaaccttggaagaga
ctacagattgaggattgggatgggggccttggaagcaaagcccccaggaatgactggaag
acaacactctgcagaccccttccacagggtacccctgctctccaggaagggccttcaggg
cagcatttggaggtggcatga

>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_5|88_aa
MTPENNLNPREVTKDTGKAPIEGVSAGPWDAVLSHSACRMEFFWQARAVDLVQHQDFLEQ
ALSGGQEPLVRSSPGTICEMLGMSPLWG

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_5|267_bp
atgacaccagagaataacttgaatccacgtgaagtaacaaaggacactggaaaagctcct
attgaaggtgtcagtgctggaccctgggatgcagtcctgagccatagtgcctgcaggatg
gaattcttctggcaggcccgggctgtggacctagtacaacaccaggacttcctggaacag
gcactgagtggaggtcaagagcccttggttcgttcctcccctggcacaatttgtgagatg
ttaggcatgtcccctctctggggctaa

>gi568815592f:45322577_45647302|GENSCAN_predicted_peptide_6|552_aa
XDRVSPEEEGALTLALWPRTGTKQLLPSPHHPHPRILSRGPTSLLPTDRKNPSNQNKGWR
TGGRRRGRRREQNGDTPASSPLSESMVMASAAAYRHSEAGSQHNQIEAKGLGGEWLLVVS
PFFLVGRRSSQGRKLGHHKSGPAARPGGQRGSAVGGHAGGGPGRTLRRSICMCEQHFDIW
PRKDKFSKPPFMDPTHRSSTQKKNCFPIGLESDCCCFPYTVADAVRMNCLWVTARSYEQT
TGPVLTLRRQSTLPICWKTAELVLWLFQILQDFFLQLLWVLNQACAQFYGEGHLLLQTNC
FVKVWFSFLDQILTDTGHLTTYVITGSPNRMGPQPGVYPVEAYKACKMASVVSVLWALVC
LKDPRLLNTVPLLVCPELTQTPHSHTELTLTKLPQAPKATGLLVFQQPWSSGTIILLVSY
LQSINLMQVAKPAQSRRGKPRATDWRKRDESWDMRAGRDFRRSWNNGCTLQEVGFRVNVS
RTFHGLHLKGIGLPRQVSGRAEHLGRDKKEGTWASKLGHDQYWSVAQGLGIHDLDHTESR
LYLLALDFTLEL

>gi568815592f:45322577_45647302|GENSCAN_predicted_CDS_6|1659_bp
nnggacagagtgtccccagaggaggagggagcactgacgctggctctctggccccgcaca
gggactaaacagctactgccatccccacaccaccctcatccaagaattctcagtcggggt
cccacttctctgctccccacagaccggaagaacccaagtaaccagaacaagggttggagg
actggtgggagaaggcgaggaaggaggagggaacagaatggggacactcctgcctcttca
cccctctctgagtcaatggtcatggccagtgctgctgcttataggcactctgaagctggt
tcccagcataatcaaatagaagccaaaggactcggtggagaatggctgctggtggtctcc
cccttcttcctggtgggtcggcgttcatcccagggaagaaaactgggtcatcacaagtct
ggccctgcggcccgaccaggcggccagcgtggaagcgcagtgggcggccacgcgggcggc
ggcccgggccgcaccttgaggcggtcaatctgtatgtgtgagcagcactttgatatctgg
ccacgaaaggacaagttctcaaagcccccattcatggaccctacacacaggagcagcaca
cagaaaaaaaattgtttccccatcggtctagaaagcgactgctgttgttttccatacaca
gttgcagacgcggtcaggatgaattgcctgtgggtgacagccaggtcctatgagcagact
acagggccagtcctgaccctccgccgacaaagtacactgcccatctgctggaagacagca
gagctggtcctgtggctctttcagatcctacaagatttcttccttcagctcctctgggtc
ctgaaccaggcatgtgcccagttctatggagaaggacacctgcttctgcaaaccaactgc
tttgtcaaggtgtggttcagctttcttgatcaaattctaactgacacagggcatttgact
acttatgtgatcacaggatctccaaacagaatgggtccccaaccaggagtctaccccgtg
gaagcctacaaggcatgtaaaatggcatccgtggtttcagttctctgggctcttgtctgt
ctaaaagacccacgacttctcaacacagtgcctttgctggtatgccctgagcttacccaa
acccctcattcccacactgagctaactcttaccaagctcccacaagcaccaaaggctact
ggcctactggtctttcagcagccatggagctctggaacaattatcctgcttgtatcttat
cttcagtccataaatttaatgcaagttgcaaagccagcccaatccaggagagggaagcct
agggccactgactggagaaagagggatgaatcatgggatatgagggctggaagggacttc
agaagatcttggaataatggctgtacattacaggaagtggggtttagggtcaacgtgagc
aggaccttccatggactacacctgaaaggaattgggctgccacggcaggtatcaggcaga
gctgaacacttgggcagagacaaaaaggaggggacatgggcatccaaattaggccatgac
caatactggtccgtggcccagggcttagggattcatgacctagaccacactgagagtcgg
ctgtacctgctagctcttgacttcactcttgaactctga