GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:03:53

Sequence gi568815593f:159816906_160072489 : 255584 bp : 43.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  35201  36318 1118  1  2   60   53   271 0.310  14.56
 1.02 Intr +  61162  61337  176  1  2   23  116    72 0.261   3.08
 1.03 Intr +  62043  62111   69  1  0   64   68    62 0.248   0.95
 1.04 Term +  65715  65884  170  1  2   96   33    51 0.268  -1.56
 1.05 PlyA +  66028  66033    6                               1.05

 2.00 Prom +  80960  80999   40                              -2.16
 2.01 Init + 100001 100949  949  1  1   55  111  1389 0.805 131.62
 2.02 Intr + 102817 102932  116  2  2   64  110    10 0.419   0.97
 2.03 Intr + 111389 111530  142  1  1   46   58    73 0.226   0.03
 2.04 Term + 114786 114979  194  1  2   61   46   122 0.682   2.88
 2.05 PlyA + 116914 116919    6                               1.05

 3.04 PlyA - 119242 119237    6                               1.05
 3.03 Term - 133732 133588  145  0  1   53   41   209 0.857  10.08
 3.02 Intr - 133940 133808  133  0  1  -20   55   208 0.820   6.40
 3.01 Init - 134284 133945  340  1  1   97   45   414 0.936  33.42
 3.00 Prom - 134893 134854   40                              -3.96

 4.00 Prom + 142797 142836   40                              -7.26
 4.01 Init + 147854 148008  155  1  2   53   80   175 0.946  12.69
 4.02 Intr + 153787 153875   89  1  2   44   91   -19 0.111  -6.39
 4.03 Term + 154974 155587  614  1  2  108   49  1084 0.556 101.15
 4.04 PlyA + 156965 156970    6                               1.05

 5.00 Prom + 157812 157851   40                              -3.16
 5.01 Init + 193624 193953  330  0  0  102  111   312 0.993  32.21
 5.02 Term + 195111 195149   39  2  0   70   52    40 0.402  -4.21
 5.03 PlyA + 196465 196470    6                               1.05

 6.04 PlyA - 197150 197145    6                               1.05
 6.03 Term - 207073 206793  281  2  2   30   44   287 0.958  14.11
 6.02 Intr - 208795 208730   66  2  0   93   61    41 0.615   0.78
 6.01 Init - 210710 210656   55  2  1   59  115    29 0.788   4.15
 6.00 Prom - 214201 214162   40                              -8.36

 7.00 Prom + 214794 214833   40                              -5.06
 7.01 Init + 215105 215107    3  1  0   62  115     0 0.314   0.10
 7.02 Intr + 217417 217464   48  0  0   90   73    50 0.398   2.58
 7.03 Intr + 218235 218295   61  2  1   61   94    25 0.256  -1.29
 7.04 Intr + 219786 219898  113  1  2  109   91    -8 0.324   1.70
 7.05 Intr + 226228 226264   37  0  1   81   87    57 0.655   2.74
 7.06 Intr + 232609 232757  149  2  2  100   53    47 0.909   2.35
 7.07 Intr + 234224 234278   55  1  1  117   87    53 0.909   6.65
 7.08 Term + 248027 248160  134  0  2   87   42   106 0.720   4.15
 7.09 PlyA + 248618 248623    6                               1.05

 8.02 PlyA - 249689 249684    6                               1.05
 8.01 Term - 254972 254826  147  2  0   81   54   138 0.988   7.60

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_1|510_aa
MSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTNKWENIPCSWVGRINVM
KMAILPKVIYRFNAIPIKLPMTFLTELEKITLKFIWNQKRAHIAKSILSQKNKAGGITLP
DFKLYYQATVTKTAWCWYQNRDIDQWNRTEPSEIMLHIYNNLIFDKPDKKKWGKDSLFNK
WFWENWLAIRRKLKLDPLLTPYTKINSRWIKDLNVRPKTIKTLEENLGNTIQDIGMGKDF
MSRTPKAMATKVKIDKWDQIKLKSFGTAKETTIRVNRQLTEWEKIFAIYSSDKGLISRIY
NELKQIYKKKTNNPIKKWAKGMNRHFSKDIYAAKRHMKNCSPSLAIREMQIKTTMRYHLT
PVRMAIKKSGNNRTPGLNEAQESEDQMPRQSQAAPTVRDARPSSPTVALLNQSGPEMSSS
CYLGYVRARSQDFSDVAQNPAKSQLPPYILTPALAKRQAFTIDMFPSPNSLIIQLCLVIS
KLQNRDELVASGLKLSKLPNLLLGVCSFCN

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_1|1533_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaactt
acaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaa
gaggatacaaacaaatgggagaacattccatgctcatgggtaggaagaatcaatgtcatg
aaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaagctacca
atgactttcctcacagaattggaaaaaattactttaaagttcatatggaaccaaaaaaga
gcccatattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacct
gacttcaaactatactaccaggctacagtaaccaaaacagcatggtgctggtaccaaaac
agagatatagaccaatggaacagaacagagccctcagaaataatgctgcatatctacaac
aatctgatctttgacaaacctgacaaaaagaaatggggaaaggattccctatttaataaa
tggttctgggaaaactggctagccatacggagaaagctgaaactggatcccctccttaca
ccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccata
aaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttc
atgtctagaacaccaaaagcaatggcaacaaaagtcaaaattgacaaatgggatcaaatt
aaactaaagagcttcggcacagcaaaagaaaccaccatcagagtgaacaggcaacttaca
gaatgggagaaaatttttgcaatctactcatctgacaaagggctaatatccagaatctac
aatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaag
ggtatgaacagacacttctctaaagacatttatgcagccaaaagacacatgaaaaattgc
tcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcaca
ccagttagaatggctatcaaaaagtcaggaaacaacaggactccagggctgaacgaggcc
caagaatcagaggaccaaatgccgaggcagtctcaggcagctccgacagtccgggacgcc
aggcccagcagtcctacagttgccctcttgaatcagtcgggtccagagatgagcagcagc
tgttacctaggctatgtcagggccaggagccaagacttttctgatgtcgctcaaaaccca
gcaaagagccagctgcctccttacatcctcaccccggccctggcaaagcgtcaggcattc
actattgacatgtttccatcacccaatagcctgatcatacagctgtgcttggtaatatcc
aagctgcagaacagggatgaactcgtggcttcagggctcaagctctctaaattgccaaac
ttgctcctgggtgtctgttcattttgcaattag

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_2|466_aa
MNPDLDTGHNTSAPAHWGELKNANFTGPNQTSSNSTLPQLDITRAISVGLVLGAFILFAI
VGNILVILSVACNRHLRTPTNYFIVNLAMADLLLSFTVLPFSAALEVLGYWVLGRIFCDI
WAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRRKAILALLSVWVLSTVISIGP
LLGWKEPAPNDDKECGVTEEPFYALFSSLGSFYIPLAVILVMYCRVYIVAKRTTKNLEAG
VMKEMSNSKELTLRIHSKNFHEDTLSSTKAKGHNPRSSIAVKLFKFSREKKAAKTLGIVV
GMFILCWLPFFIALPLACRGCDQSMLRKEKASAGCRNGSKVQALAFRGRGNSSKQHHESA
QDTVESVHIGRLCSYDSIDSTLLATLTRSSSDHPLNTQVPLSVLEARKSKIKEQEHSVSG
EDLPIDGDFYVSSHGRRGKQALECLFYKYTDPIYQSSALVTYLPFT

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_2|1401_bp
atgaatcccgacctggacaccggccacaacacatcagcacctgcccactggggagagttg
aaaaatgccaacttcactggccccaaccagacctcgagcaactccacactgccccagctg
gacatcaccagggccatctctgtgggcctggtgctgggcgccttcatcctctttgccatc
gtgggcaacatcctagtcatcttgtctgtggcctgcaaccggcacctgcggacgcccacc
aactacttcattgtcaacctggccatggccgacctgctgttgagcttcaccgtcctgccc
ttctcagcggccctagaggtgctcggctactgggtgctggggcggatcttctgtgacatc
tgggcagccgtggatgtcctgtgctgcacagcgtccattctgagcctgtgcgccatctcc
atcgatcgctacatcggggtgcgctactctctgcagtatcccacgctggtcacccggagg
aaggccatcttggcgctgctcagtgtctgggtcttgtccaccgtcatctccatcgggcct
ctccttgggtggaaggagccggcacccaacgatgacaaggagtgcggggtcaccgaagaa
cccttctatgccctcttctcctctctgggctccttctacatccctctggcggtcattcta
gtcatgtactgccgtgtctatatagtggccaagagaaccaccaagaacctagaggcagga
gtcatgaaggagatgtccaactccaaggagctgaccctgaggatccattccaagaacttt
cacgaggacacccttagcagtaccaaggccaagggccacaaccccaggagttccatagct
gtcaaactttttaagttctccagggaaaagaaagcagctaagacgttgggcattgtggtc
ggtatgttcatcttgtgctggctacccttcttcatcgctctaccgcttgcctgcagaggc
tgtgaccagagcatgctcaggaaggagaaggcctcagcaggatgcaggaatggatcaaag
gtgcaggctttggcttttaggggcaggggaaatagctccaaacagcaccatgagtcagct
caggatacagtagaatctgtccacattggcaggctctgctcttacgactctattgacagc
acactcctggccacactcacccgcagctcatctgaccaccctttgaacactcaagtgccc
ctctctgttctggaggctcggaagtccaagatcaaggagcaagaacattcagtgtctggt
gaggacctgcccatagatggtgacttctatgtgtcctcacatggcagaaggggcaaacag
gctctcgaatgcctcttttataagtacactgatcccatttatcaaagttctgccctggtg
acctacttgcctttcacatga

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_3|205_aa
MEKAGADLQGGATRVIISAPSADAPMFVMGMNHKKYDNRLNIVSYASCTTNCLVPLGEVI
HDNFGIVERFQNTVHAITATQKIVDGLSGKLWCDGCGALQNITPASTGTAKAVGVISKLN
KKLTDMGFCVHITNVSVMDLTCRLEKPAKYDDIKKVVKDTHSSTFDAGAGIALKDHFVKL
ISWYDNEFGYSNRVVDLMAHIASKE

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_3|618_bp
atggagaaggctggggctgacttgcagggaggagctacaagggtcatcatctctgccccc
tctgctgatgcccccatgttcgtgatgggcatgaaccacaagaagtatgacaacagactc
aatatcgtcagctatgcctcctgcaccaccaactgcttagtgcccctgggcgaggtcatc
catgacaactttggtattgtggaaagattccagaatacagtccacgccatcactgccacc
cagaagattgtggatggcctctctgggaaactgtggtgcgacggctgcggggctctccag
aacatcacccctgcctctactggcactgccaaggctgtgggggtcatctctaagctgaac
aagaagctcactgacatgggcttctgtgtccacatcaccaacgtgtcagtcatggacctc
acctgccgtctcgaaaaacctgccaaatatgatgacattaagaaggtggtgaaagacacc
cactcctccacctttgatgctggggccggcattgccctcaaagaccattttgtcaagctc
atttcctggtatgacaacgaatttggctacagcaacagggtggtggacctcatggcccac
atagcctccaaggagtaa

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_4|285_aa
MPTQHIDLILFTTFFILVAVVLVVTAVLAVVTVAALKAVIIAILIECFQCASHEQSSSCP
HTPHPCVNLELCSFLIFASLSGSLFSTLKPPDAVFKVVFWLGYFNSCLNPIIYPCSSKEF
KRAFVRILGCQCRGRGRRRRRRRRRLGGCAYTYRPWTRGGSLERSQSRKDSLDDSGSCLS
GSQRTLPSASPSPGYLGRGAPPPVELCAFPEWKAPGALLSLPAPEPPGRRGRHDSGPLFT
FKLLTEPESPGTDGGASNGGCEAAADVANGQPGFKSNMPLAPGQF

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_4|858_bp
atgcccacacagcacatagacctcatcctcttcaccaccttcttcatcttggtagcagtg
gtactggtggtaacagcggtgctggcagttgtaacagtagcagcgctcaaagcagtcatc
atagctatacttattgagtgctttcaatgtgccagccatgaacaaagctcctcgtgtccc
cacaccccacacccctgtgtgaacttggaactatgcagcttcctaatttttgccagccta
tcaggctccttgttctccaccctgaagccccccgacgccgtgttcaaggtggtgttctgg
ctgggctacttcaacagctgcctcaaccccatcatctacccatgctccagcaaggagttc
aagcgcgctttcgtgcgcatcctcgggtgccagtgccgcggccgcggccgccgccgacgc
cgccgccgccgtcgcctgggcggctgcgcctacacctaccggccgtggacgcgcggcggc
tcgctggagcgctcgcagtcgcgcaaggactcgctggacgacagcggcagctgcctgagc
ggcagccagcggaccctgccctcggcctcgccgagcccgggctacctgggccgcggcgcg
ccaccgccagtcgagctgtgcgccttccccgagtggaaggcgcccggcgccctcctgagc
ctgcccgcgcctgagccccccggccgccgcggccgccacgactcgggcccgctcttcacc
ttcaagctcctgaccgagcccgagagccccgggaccgacggcggcgccagcaacggaggc
tgcgaggccgcggccgacgtggccaacgggcagccgggcttcaaaagcaacatgcccctg
gcgcccgggcagttttag

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_5|122_aa
MGEKSENCGVPEDLLNGLKVTDTQEAECAGPPVPDPKNQHSQSKLLRDDEAHLQEDQGEE
ECFHDCSASFEEEPGADKVENKSNEDVNSSELDEEYLIELEKNMSDEEKQCAPPEQEEKG
QK

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_5|369_bp
atgggggagaagtcagagaactgtggggttccagaggatctgttaaatggtttgaaggtt
acagatactcaggaagccgagtgtgctggccctccagttcctgatcccaaaaatcagcat
tcccagagtaagctgctcagggatgatgaggcccatctccaggaggaccagggagaagag
gagtgttttcatgactgcagtgcctcatttgaggaggagccaggagcggacaaggttgag
aacaaatctaatgaagatgtgaattcctctgaactagatgaagaatacctaatagaactg
gaaaaaaacatgtcggatgaagagaaacagtgtgcaccaccagaacaggaggaaaaaggg
caaaagtga

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_6|133_aa
MTVDGHSKPQEEMKNIRNGVEIKNCLQEVELSNAQKLLQKGGTKYSLIPDEEEEKEEAKS
AEFEKPDPTRNPSRKRKEEKKKNWKSSDSDSSDSENDTGKRARHTSKDSKAAKKKKKKKH
KKKHIGVERLGNM

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_6|402_bp
atgacagtagatggtcactcaaaaccacaggaggaaatgaagaacatcagaaacggtgtg
gaaataaagaattgtttgcaggaagtagaactgagtaatgcacagaagctgctgcaaaaa
ggtgggaccaaatactctctgatacctgatgaggaagaggaaaaggaagaggcaaagtca
gcagagtttgagaagcctgaccccacaaggaatccttctagaaaaagaaaggaggagaag
aaaaagaattggaagtcatctgactctgacagctcagactctgagaatgatacaggcaag
agggcaaggcacacatcaaaagacagcaaggcagcaaagaagaagaaaaagaagaagcac
aagaagaagcacataggagtggaaagattaggcaacatgtga

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_7|199_aa
MDNILSAFVFDEFLAIYKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKE
RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYK
SILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQ
DSSTGSYSINFVQNPNNNR

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_7|600_bp
atggataacattctctcagcctttgtgtttgatgagtttttggccatctataaaagaaga
gaagagagcactagactaaaggaggagggaaatgaacagtttaagaaaggagattatata
gaagctgaaagttcttatagtcgagccctcgaaatgtgcccatcctgcttccaaaaggag
aggtcgattctattttcaaatagagctgcagcaaggatgaaacaggacaagaaagaaatg
gccatcaatgactgcagcaaagcaattcaattaaaccccagctatatcagggcaatattg
aggagagcagagttgtatgagaagacggacaagctagatgaagccctggaagactataaa
tctatattagaaaaagatccatcaatacatcaagcaagagaagcttgtatgagattacct
aagcaaattgaagaacgtaatgaaagactaaaagaagagatgttaggtaaattaaaagat
cttgggaacttggttctccgaccttttgggctctccacggaaaatttccagatcaaacag
gattcctctaccggctcgtactccatcaatttcgttcaaaatccaaataataacagataa

>gi568815593f:159816906_160072489|GENSCAN_predicted_peptide_8|48_aa
GRDEHMEETGTVMKGSDHRKQQEGTYNPAGSDHQLQAHKAASEWGLRS

>gi568815593f:159816906_160072489|GENSCAN_predicted_CDS_8|147_bp
gggagggacgagcatatggaggaaaccggcacagtaatgaagggaagtgatcacagaaaa
caacaggaaggaacatacaatccagctggcagcgaccatcagctgcaggctcataaggct
gcatctgaatgggggctgcgcagctga