GENSCAN 1.0	Date run:  5-Nov-116	Time: 20:48:38

Sequence gi568815593f:142008975_142244671 : 235697 bp : 44.14% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 Intr -   3067   2875  193  1  1  116   86   207 0.498  22.37
 1.01 Init -  22995  22876  120  0  0   45  106   111 0.932   8.79
 1.00 Prom -  23404  23365   40                              -2.06

 2.02 PlyA -  25804  25799    6                               1.05
 2.01 Sngl -  28151  27591  561  2  0   55   37   238 0.987  11.78
 2.00 Prom -  32939  32900   40                              -2.46

 3.00 Prom +  33631  33670   40                              -9.85
 3.01 Sngl +  33672  35864 2193  2  0   26   48   723 0.827  56.05
 3.02 PlyA +  35940  35945    6                               1.05

 4.00 Prom +  49916  49955   40                              -5.26
 4.01 Init +  50654  50708   55  1  1   72   77    28 0.304   1.55
 4.02 Intr +  56467  56626  160  2  1   79    3   102 0.608  -0.15
 4.03 Intr +  57368  57500  133  2  1   54  115    67 0.684   6.65
 4.04 Intr +  59184  59304  121  2  1  111   69    27 0.738   3.17
 4.05 Term +  66087  66181   95  1  2   85   49    62 0.356  -0.01
 4.06 PlyA +  69246  69251    6                               1.05

 5.03 PlyA -  69337  69332    6                               1.05
 5.02 Term -  71655  71516  140  1  2   92   48    78 0.521   2.33
 5.01 Init -  91969  91888   82  1  1   75  100    43 0.195   5.33
 5.00 Prom -  92430  92391   40                              -5.76

 6.00 Prom +  93491  93530   40                              -5.46
 6.01 Init + 100001 100063   63  1  0  105  115   159 0.917  20.26
 6.02 Intr + 100132 100263  132  0  0   83   75    42 0.735   3.24
 6.03 Intr + 122840 122921   82  1  1   45   96    94 0.436   5.11
 6.04 Intr + 123238 123368  131  2  2   29   70    93 0.623   2.01
 6.05 Intr + 126756 126843   88  2  1   84   89    26 0.866   1.84
 6.06 Intr + 128760 128884  125  1  2  105  110   -16 0.410   2.60
 6.07 Intr + 131589 131655   67  2  1   67   97    16 0.095  -1.12
 6.08 Intr + 154990 155020   31  2  1  112   75     7 0.088  -1.01
 6.09 Term + 155267 155345   79  2  1  146   50    33 0.416   2.54
 6.10 PlyA + 156325 156330    6                               1.05

 7.10 PlyA - 158145 158140    6                               1.05
 7.09 Term - 162049 161916  134  2  2  117   43    68 0.697   3.45
 7.08 Intr - 162616 162434  183  2  0   20   47   134 0.427   2.26
 7.07 Intr - 171252 171128  125  2  2  116   61    19 0.008   2.23
 7.06 Intr - 180957 180812  146  0  2   22   44   112 0.002  -0.72
 7.05 Intr - 182888 182843   46  1  1  121  100    -7 0.019   2.21
 7.04 Intr - 184230 184133   98  0  2   66  100     1 0.005  -2.09
 7.03 Intr - 194290 194104  187  0  1   78   87    50 0.038   3.59
 7.02 Intr - 202508 202477   32  2  2   83  100    40 0.017   1.63
 7.01 Intr - 227548 227393  156  1  0   57   62    79 0.019   2.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_1|105_aa
MIATAIFSLCPSDEWNITSTHTGRCSLYRKHVLETVETYKDKMKLIILEHYSQASEWAAK
YIRNRIIQFNPGPEKYFTLGLPTGAFLDGEGAVDKGGESRQQGPX

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_1|315_bp
atgatagcaactgccatcttttccttgtgtccctctgacgagtggaacatcaccagtact
cacactggaagatgctccctatacagaaagcatgtcctagaaactgtggagacctataaa
gacaagatgaagctcatcatcctggagcactattctcaggcgagcgagtgggcggctaaa
tacatcaggaaccgcatcatccagtttaacccagggccagagaagtacttcaccctgggg
ctccccactggtgcgttcttggatggagagggtgccgtggataagggtggagagagtagg
caacaggggccagnn

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_2|186_aa
MSKFGRATRGLRKPEVGDVIRTIVRAGLAMPGPPLGPVLGQRRASINQFCKEFNERTKDI
KEGIPLLTKIFLKPDGTFEIKIGQPTVSYFVKAAAGIEKGARPTASVQKSLQLSRRNKPS
SWLLRRRQIWPPRRKLPRSDPFPQLLDFKGGSWEGASCKGCAQGEEGGHTNMMMVFVTLN
DIFLYI

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_2|561_bp
atgtcaaagttcggccgggccacccggggcctcaggaagcccgaggtcggcgatgtgatc
cggaccatcgtgcgggcaggcctggccatgcccgggcccccactaggcccagtgctgggt
cagagaagggcttccatcaaccaattttgcaaggagttcaatgagaggacaaaggacatc
aaggaaggcattcctctgcttaccaagatttttctgaagcctgacgggacatttgaaatc
aagattggacaacccactgtttcctacttcgtgaaggcagcagctgggattgaaaagggg
gcccggccaacagcctcagttcagaagagtttgcagctttccagaaggaacaagccatct
tcctggctgctcagaagaaggcagatttggccacccaggaggaagctgccaagaagtgac
cctttcccccaactcctagatttcaaaggaggcagctgggaaggggccagttgcaaaggc
tgtgcccaaggggaggaaggaggtcacaccaatatgatgatggttttcgtgactttgaat
gatatatttttgtacatctag

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_3|730_aa
MANCLSDHSAIKLELRIKKLTQNCSTTWKLNNLLLNDCWVHKEMKAEIKMFFETNENKDT
TYQNLWDTFKAVCRGKFIALNAHKRKQKRSKIDTLTSQLKELEKQEQTHSKASRRQEITK
IRAELKEIETQKNLQKINESRSWFFERINKVDRPLSRLIKKKREKNQIDAIKNDKGDITT
DPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQGEVDSLNRPITGSEIVAII
NSLPTKKSPGPDGFTAKFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGR
DTTKKENFRPISLMNTDAKILNKILANRIQQHIKKLIHRDQVGFIPGMQGWFNICKSINV
IQHIDRTKDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYLKIIRAIYDKPTANII
LNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFAD
DMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIA
SKRIKYLGIQLTRDVKDLFKETYKPLLNEIKEDTNKWKNIPCSWVGRINIVKMAILPMVI
YRFNAIPIKLPMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKAT
VTKTAWYWYQNRDTDQWNRTEPSEIMPHIYNYLIFDKLEKNKQWGKDSLFSKWCWENWSN
HISTQLSIIC

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_3|2193_bp
atggcaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaagaaactc
actcagaactgctcaactacgtggaaactgaacaacctgctcctgaatgactgctgggta
cataaagaaatgaaggcagaaataaagatgttctttgaaaccaatgagaacaaagacaca
acataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcacta
aatgcccacaagagaaagcagaaaagatccaaaattgacaccctaacatcacaattaaaa
gaactagaaaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaaa
atcagagcagaactgaaggaaatagagacacaaaaaaaccttcaaaaaattaatgaatcc
aggagctggttttttgaaaggatcaacaaagttgatagaccactatcaagactaataaag
aagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggatatcaccacc
gatcccacagaaatacaaactaccatcagagaatactacaaacacctctacgcaaataaa
ctagaaaatctagaagaaatggataaattcctcgacacatacaccctcccaagactaaac
cagggagaagttgactctctgaatagaccaataacaggctctgaaattgtggcaataatc
aatagcttaccaaccaaaaagagtccaggaccagatggattcacagccaaattctaccag
aggtacaaggaggaactggtaccattccttctgaaactattccaatcaatagaaaaagag
ggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagccaggcaga
gacacaaccaaaaaagagaattttagaccaatatccttgatgaacactgatgcaaaaatc
ctcaataaaatactggcaaaccgaatccagcagcacatcaaaaagcttatccaccgtgat
caagtgggcttcatccctgggatgcaaggctggttcaatatatgcaaatcaataaacgta
atccagcatatagacagaaccaaagacaaaaaccacatgattatctcaatagatgcagaa
aaggcctttgacaaaattcaacaacccttcatgctaaaaactctcaataaattaggtatt
gatgggacgtatctcaaaataataagagctatctatgacaaacccacagccaatatcata
ctgaatgggcaaaaactggaagcattccctttgaaaactggcacaagacagggatgccct
ctctcaccactcctattcaacatagtgttggaagttctggccagggcaattaggcaggag
aaggaaataaagggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagat
gacatgattgtatatctagaaaaccccattgtctcagcgcaaaatctccttaagctgata
agcaacttcagcaaagtctcaggatacaaaatcaatgtacaaaaatcacaagcattctta
tacaccaataacagacaaacagagagccaaatcatgagtgaactcccattcacaattgct
tcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaag
gagacctacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacatt
ccatgctcatgggtaggaagaatcaatatcgtgaaaatggccatactgcccatggtaatt
tatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaa
actactttaaagttcatatggaaccaaaaaagagcccgcatcgccaagtcaatcctaagc
caaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctaca
gtaaccaaaacagcatggtactggtaccaaaacagagatacagatcaatggaacagaaca
gagccctcagaaataatgccgcatatctacaactatctgatctttgacaaacttgagaaa
aacaagcaatggggaaaggattccttatttagtaaatggtgctgggaaaactggtccaat
catatttcaacacagctgtccataatttgttga

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_4|187_aa
MHLTDEESEALPCKRLTQARSAGKCRHPYLDSGAVLCCYGNSGALWLVEEGSGCVEIGIG
GSSCALLLQQSGLGDNGLPAGRQELKQGTHEETTALAQVRAEGLPVLVWMETEDLQVMSF
RISLSRHGPKPSHPKSDSFSLAGSKSLLPFKDLKHTDTATIRFLNLFPTFPAFLFHKAAI
VILARSQ

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_4|564_bp
atgcatttaacagatgaggaatctgaggccctgccatgcaagagacttactcaagccaga
agtgccgggaaatgcagacatccctatttggactctggtgcagtcctctgttgctatggc
aactcaggggctctgtggttggtggaagaaggcagtggctgtgtggaaatcggcattgga
ggcagcagctgtgcccttttgctccagcagtctggcctaggggacaatggacttcctgca
ggaaggcaagagttgaagcaggggacccatgaggaaaccactgcgctggcccaggtgaga
gctgaagggctgcctgtgctggtatggatggagacagaggatttgcaggtgatgagcttc
cgaatcagcctgagtagacatgggccgaagccctcccaccccaagtcagacagtttcagt
ttggcgggatccaaatccctcctgccctttaaggatctcaagcacacagacacggcaacc
atccgatttctcaatcttttccccacctttcccgcctttctattccacaaagccgccatt
gtcatcctggcccgttctcaatga

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_5|73_aa
MNGPKEKTIAWDKGPLSSGEGGDKLWEAQFLIGHGLVQVHDPGVGDPWSRSLHFTCYGSN
CHVTTSSILTEAL

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_5|222_bp
atgaatgggcccaaagaaaagacaatagcctgggacaaaggtcctctgagctctggggaa
ggtggtgacaagttatgggaagcccagttcctaataggccatggactggtacaggtccac
gacccaggggttggggacccctggtctagatcacttcactttacgtgttacggctccaac
tgccatgttacgacttccagcattctcacggaagcactctga

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_6|265_aa
MALALAALAAVEPACGSRYQQASLAGPRPTRRRGLAGRAGPGGAGRAPGSDSRLPRARPA
RLRPQNEEESGEPEQAAGDAPPPYSSISAESAAYFDYKDESGFPKPPSYNVATTLPSYDE
AERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIFMLTFFMAFLFNWIGFFLSFC
LTTSAAGRYGAISGFGLSLIKWILIVRFSTYFPGYFDGQYWLWWVFLVLGRFNHLPNPLR
IPFIEGGNEGDSGLQAQDICPPTAA

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_6|798_bp
atggcgttggcgttggcggcgctggcggcggtcgagccggcctgcggcagccggtaccag
caggcctctctggccggcccgcggccaactcgacgccggggcttggcaggccgcgctggg
cctggaggggcgggtcgggccccgggctcggattcgaggctgccacgggcccggcctgcc
cgtctgcgaccccagaatgaagaagagtctggagaacctgaacaggctgcaggtgatgct
cctccaccttacagcagcatttctgcagagagcgcagcatattttgactacaaggatgag
tctgggtttccaaagcccccatcttacaatgtagctacaacactgcccagttatgatgaa
gcggagaggaccaaggctgaagctactatccctttggttcctgggagagatgaggatttt
gtgggtcgggatgattttgatgatgctgaccagctgaggataggaaatgatgggattttc
atgttaacttttttcatggcattcctctttaactggattgggtttttcctgtctttttgc
ctgaccacttcagctgcaggaaggtatggggccatttcaggatttggtctctctctaatt
aaatggatcctgattgtcaggttttccacctatttccctggatattttgatggtcagtac
tggctctggtgggtgttccttgttttaggtagatttaatcatctccccaaccctttgagg
attccctttattgaaggtgggaatgagggggattctggactgcaggcacaggacatctgc
cctcccacagcagcctga

>gi568815593f:142008975_142244671|GENSCAN_predicted_peptide_7|368_aa
WSFRARKRAVQKPDSTPSHSPCSPVAASPQKLAETGVLFSEEGTTEGQQAAQNTPQAEKA
LERCVFGFVMKEEVSCSRRTLVPTSWRWRETPVDLVGSCWFSLFPTYIPLLFLPCGCQAP
VSDEKILSHQLWHNLSGDKPSTLFLETVGHLELRRQIRNSSQGWFGIHPATLKSMAAVTF
WNPDPCCEKLKPHGETSKREAKGAPGDSPSPAPASTNYQPHHCSAQRHVPWGIFWVKQTL
PGESTEIMLNGLLYRMIPGSATPYLPNWKAFTHASECGSIAQWFGAGSVVKHGMEPQLYL
AQLYGPEQVTQHSYTWGPPLENGDANIFSAPERNLIRPYSWVAFHVVLKVPRAWATSKDS
PSEDSAVT

>gi568815593f:142008975_142244671|GENSCAN_predicted_CDS_7|1107_bp
tggagcttccgagcccgaaaacgggctgtacagaagccagactccacaccctcccactcg
ccatgcagtccggttgctgcctctccccaaaagctggcagagacaggcgttttattctcc
gaagaaggaacaacagagggtcaacaagcagcacagaacacaccgcaggccgagaaggcc
ctagaaaggtgtgtgtttggctttgtgatgaaggaagaggtcagctgctcccgcaggaca
cttgtaccaacaagttggaggtggagagagactcctgtggatcttgtgggctcctgctgg
ttctcactcttccctacttacatccctcttctcttcctgccgtgtggatgccaagctcca
gtgtcagatgagaagattctgagccatcagctctggcataacctcagtggtgacaagcct
tcaactttatttctggaaaccgtaggccatttggagctcagacggcaaataaggaacagc
tcccagggttggtttgggatccaccctgccaccctcaagagtatggcagcagtgacattc
tggaacccggacccatgctgcgagaaactcaagccacatggagagaccagtaagagggaa
gccaaaggcgctcctggggatagccccagcccagcaccagccagcaccaactaccagccc
caccactgctctgcacagaggcacgtgccctggggcattttctgggtgaagcagacactc
ccaggggagagcacagagataatgctaaatggcctgttgtacagaatgattcctggcagt
gccactccttacctgcccaactggaaagcttttacacatgcttcagaatgcggcagtatt
gcacaatggtttggggcaggttctgtggttaaacatgggatggaaccccagctctacctg
gctcagctgtacggccctgagcaagtgactcaacattcctacacatggggacccccgctg
gaaaatggagatgccaacatcttctcagcaccagagagaaacctaattcgcccttactcc
tgggttgctttccatgttgtcctcaaggtgcctcgggcatgggccaccagtaaggattca
cccagtgaggattcagctgtcacctag