GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:08:46

Sequence gi568815593r:135847334_136054833 : 207500 bp : 43.07% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3092   3163   72  1  0  128   84   113 0.985  14.50
 1.02 Intr +   5230   5488  259  0  1  122  107   402 0.994  42.54
 1.03 Intr +  24128  24385  258  0  0  120  110   195 0.961  22.33
 1.04 Intr +  26688  26821  134  1  2  139   80    49 0.711   9.56
 1.05 Term +  32635  32757  123  0  0   35   47   163 0.067   5.28
 1.06 PlyA +  34116  34121    6                               1.05

 2.04 PlyA -  34382  34377    6                               1.05
 2.03 Term -  45177  45058  120  0  0   88   49    60 0.925   0.57
 2.02 Intr -  46818  46687  132  0  0   63  100    38 0.869   3.34
 2.01 Init -  48483  48370  114  0  0   74   96   231 0.796  20.71
 2.00 Prom -  56700  56661   40                              -3.26

 3.03 PlyA -  56995  56990    6                               1.05
 3.02 Term -  61084  60833  252  1  0   57   43   180 0.665   6.04
 3.01 Init -  63913  63869   45  1  0   89   65    14 0.245   0.04
 3.00 Prom -  73201  73162   40                              -3.16

 4.03 PlyA -  73723  73718    6                               1.05
 4.02 Term -  75101  74995  107  0  2   44   49   207 0.989  10.97
 4.01 Init -  75493  75475   19  1  1   97   94     5 0.918   2.23
 4.00 Prom -  78589  78550   40                              -4.06

 5.00 Prom +  81892  81931   40                              -3.26
 5.01 Init +  83205  83334  130  2  1   79   72    82 0.465   4.01
 5.02 Intr +  90164  90214   51  0  0   77   94    31 0.185   1.48
 5.03 Term +  93695  94338  644  0  2   67   39   193 0.492   6.63
 5.04 PlyA +  94990  94995    6                               1.05

 6.07 PlyA -  97607  97602    6                               1.05
 6.06 Term - 100164  99998  167  1  2  107   35   122 0.998   6.88
 6.05 Intr - 104035 103890  146  0  2   58   94   126 0.981  10.13
 6.04 Intr - 105634 105538   97  2  1  113   86    70 0.955   8.37
 6.03 Intr - 109318 109128  191  0  2   99   70    14 0.505  -0.07
 6.02 Intr - 111100 111011   90  0  0   62   91    58 0.620   2.61
 6.01 Init - 136968 135842 1127  0  2   60   53   318 0.258  19.17
 6.00 Prom - 140409 140370   40                              -3.46

 7.03 PlyA - 140704 140699    6                               1.05
 7.02 Term - 149578 149459  120  1  0   68   38    90 0.204   0.47
 7.01 Init - 154609 154415  195  1  0   58   81    89 0.635   4.13
 7.00 Prom - 155564 155525   40                              -4.66

 8.03 PlyA - 155669 155664    6                               1.05
 8.02 Term - 161212 161046  167  2  2   97   47    90 0.191   3.88
 8.01 Init - 169152 169143   10  0  1   93  103     0 0.340   2.70
 8.00 Prom - 173071 173032   40                              -1.86

 9.00 Prom + 174180 174219   40                              -4.96
 9.01 Init + 181723 181856  134  0  2   79  102   398 0.999  37.91
 9.02 Intr + 186430 186528   99  1  0  104   92   124 0.742  13.63
 9.03 Intr + 190543 190567   25  1  1   67   67    34 0.629  -2.77
 9.04 Intr + 192035 192082   48  1  0   91   63    64 0.300   3.08
 9.05 Intr + 196256 196310   55  1  1  102   65    11 0.004  -1.25
 9.06 Intr + 199002 199162  161  1  2  112   31   160 0.997  12.41
 9.07 Intr + 199518 199682  165  2  0  143   37   254 0.999  25.96
 9.08 Intr + 199941 200087  147  2  0  106   90   318 0.999  34.23
 9.09 Intr + 202106 202247  142  1  1  125   83   220 0.998  25.13
 9.10 Intr + 205574 205786  213  0  0   92   96   287 0.997  28.59
 9.11 Intr + 206610 206747  138  1  0  110   87    62 0.979   8.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 196725 196789   65  0  2   89   68    83 0.967   4.76


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_1|281_aa
TRLQAGVGYGNTLSCIRVVYRRESMFGFFKGMSFPLASIAVYNSVVFGVFSNTQRFLSQH
RCGEPEASPPRTLSDLLLASMVAGVVSVGLGGPVDLIKIRLQMQTQPFRDANLGLKSRAV
APAEQPAYQGPVHCITTIVRNEGLAGLYRGASAMLLRDVPGYCLYFIPYVFLSEWITPEA
CTGPSPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYLNKYKGVLDCISQSYQKEGL
KVFFRGITVNAVRGFPMSAAMFLGYELSLQAIRGDHAVTSP

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_1|846_bp
actcgcctgcaggctggcgttggctacggaaacaccctcagctgcatccgcgtggtgtac
aggagggagagtatgttcggcttcttcaagggcatgtccttccccctcgccagcattgcc
gtctacaactccgtggtgtttggggtcttcagtaacacgcagcggttcctcagccagcac
cgctgcggggagccagaggccagtcctccccgcacgctgtcagacctgctcctggccagc
atggtggccggcgtggtctctgtcgggctgggagggcccgtggacctcatcaagatccgg
ttgcagatgcagacacaaccgtttcgggacgccaacctcggtttgaagtccagggcagtg
gctcctgcggagcagccagcataccaggggccagtgcactgcattacaaccattgtgagg
aatgagggcctggcggggctataccggggggccagtgccatgctgctgagggatgtccca
ggctattgcctctacttcatcccctacgtgttcctgagtgagtggatcacacctgaggcc
tgcacaggccccagcccctgtgccgtgtggctggcgggcggcatggcaggagcaatttct
tgggggacagcgactcctatggatgtcgtgaaaagtcgactccaagctgatggggtttat
ttaaacaaatataaaggtgtcctggactgtatctcccagagttaccagaaggaaggtctt
aaagtgtttttcagaggcatcactgtgaacgcggtgcggggcttccccatgagtgcggcc
atgttccttgggtacgagctgtcgctgcaggctatccgcggggaccacgcagtgacgagc
ccataa

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_2|121_aa
MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQDNCTRPCFSERLSQMTNTTMQT
RYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGNALTFLKSLLEIFQKEKMRGMRGK
I

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_2|366_bp
atgcttctggccatggtccttacctctgccctgctcctgtgctccgtggcaggccagggg
tgtccaaccttggcggggatcctggacatcaacttcctcatcaacaagatgcaggacaac
tgcaccagaccatgcttcagtgagagactgtctcagatgaccaataccaccatgcaaaca
agatacccactgattttcagtcgggtgaaaaaatcagttgaagtactaaagaacaacaag
tgtccatatttttcctgtgaacagccatgcaaccaaaccacggcaggcaacgcgctgaca
tttctgaagagtcttctggaaattttccagaaagaaaagatgagagggatgagaggcaag
atatga

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_3|98_aa
MWEFLHPILTTGDLKCAHFDEASCHIREVHVTKEPSAHSQGGIKILSPTSLAGGTESCQS
HVGLEADLSPNGAFRGDHTASVNTLTTALRETLNQRNT

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_3|297_bp
atgtgggaatttctgcatcccatccttaccacaggggaccttaagtgtgcacactttgat
gaagccagctgccacattagagaagtccatgtgacaaaggagccttcagcgcatagccag
ggaggaatcaagatcctcagcccaacaagcttggcaggaggaactgaatcctgccaaagc
catgtgggcttggaagcagatctttcccccaacggagcctttagaggagaccacactgcc
tctgtcaacaccttaactacagccttgcgggagaccctgaatcagaggaacacgtaa

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_4|41_aa
MEEGSAEITTDTPIFNNYYPDQSAAVNIKTRSSTSKKMMTH

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_4|126_bp
atggaggaaggaagtgcagaaattaccacagacaccccaatcttcaacaactactaccct
gatcagtcagcggccgtcaacatcaagacgagatcctccaccagcaagaagatgatgact
cactga

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_5|274_aa
MGSLFGPGRRALAPWATSGRSRAAERPLERPLPRPGPGRPRSRDLGLDFNSQAKFHECVG
GILCVADRCQGLRELALNYYILTDELFLALSSETHVNLEHLRIDVVSENPGQIKFHAVKK
HSWDALIKHSPRVNVVMHFFLYEEEFETFFKEETPVTHLYFGRSVSKVVLGRVGLNCPRL
IELVVCANDLQPLDNELICIAEHCTNLTALGLSKCEVSCSAFIRFVRLCERRLTQLSVME
EVLIPDEDYSLDEIHTEVSKYLGRVWFPDVMPLW

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_5|825_bp
atgggctcgctctttgggcccgggaggcgtgcgctcgcgccctgggccacgtcggggcgg
tctcgggcggctgagcgccccctggagcgacccctcccgcggcccgggcccggccgcccc
cgaagccgggaccttgggcttgatttcaacagccaagccaagtttcatgaatgtgtcgga
ggaattctttgtgtagctgaccgttgtcaaggccttagagaactggcgttgaattattac
atcctaactgatgaacttttccttgcactctcaagcgagactcatgttaaccttgaacat
cttcgaattgatgttgtgagtgaaaatcctggacagattaaatttcatgctgttaaaaaa
cacagttgggatgcacttattaaacattcccctagagttaatgttgttatgcacttcttt
ctatatgaagaggaattcgagacgttcttcaaagaagaaacccctgttactcacctttat
tttggtcgttcagtcagcaaagtggttttaggacgggtaggtctcaactgtcctcgactg
attgagttagtggtgtgtgctaatgatcttcagcctcttgataatgaacttatttgtatt
gctgaacactgtacaaacctaacagccttgggcctcagcaaatgtgaagttagctgcagt
gccttcatcaggtttgtaagactgtgtgagagaaggttaacacagctctctgtaatggag
gaagttttgatccctgatgaggattatagcctagatgaaattcacactgaagtctccaaa
tacctgggaagagtatggttccctgatgtgatgcctctctggtaa

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_6|605_aa
MSELPFTIASKRIKYLGIQLTRDMKDLFKENYKPLLKEIKEDTNKWKNIPCSWVRRINIV
KMAILPKVIYRFNAIPIKLSMTFFTELEKATLKFIWNQKRARIAKSILSQKNKAGGITLP
DFKLYYKATVTKTVWYWYQNRDIDQCNRTEPSEITPHIYNYLIFDKPEKNNQWGKDSLFN
KWCWENWLATCRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGMGKD
FMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTKWEKIFATYSSGKGLISRI
YNELKQIYKKKTNNPIKKWAKDTNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYH
LTPVRMAIIKKSGNNSLEDGTGFRGEDTLETVNAEGRENRRKAGHRAAGSSASRRCRNTG
RSVQRLRPQKTQAFPTHCHFCLILVVKATQLNPKSRVRKVPFAPMKHGKALAGPWANICA
GKSSNEIRTCDRHGCGQYSAQRSQRPHQGVDILCSAGSTVYAPFTGMIVGQEKPYQNKNA
INNGVRISGRGFCVKMFYIKPIKYKGPIKKGEKLGTLLPLQKVYPGIQSHVHIENCDSSD
PTAYL

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_6|1818_bp
atgagtgaactcccattcacaattgcttcaaagagaataaaatacttaggaatccaactt
acaagggatatgaaggacctctttaaggagaactacaaaccactgctcaaggaaataaaa
gaggatacaaacaaatggaagaacattccatgctcatgggtaagaagaatcaatattgtg
aaaatggccatactgcccaaggtaatttacagattcaatgccatccccatcaagctatca
atgactttcttcacagaattggaaaaagctactttaaagttcatatggaaccaaaaaaga
gcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacct
gacttcaaactatactacaaggctacagtaaccaaaacagtatggtactggtaccaaaac
agagatatagatcaatgcaacagaacagagccctcagaaataacgccgcatatctacaac
tatctgatctttgacaaacctgagaaaaacaatcaatggggaaaggattccctatttaat
aaatggtgctgggaaaactggctagccacatgtagaaagctgaaactggatcccttcctt
acaccttatacaaaaattaattcaagatggattaaagacttaaacgttagacctaaaacc
ataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggac
ttcatgtctaaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaacct
acaaaatgggagaaaattttcgcaacctactcatctggcaaagggctaatatccagaatc
tacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcg
aaggacacgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaa
aaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccat
ctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagtttagaggacggc
actggcttcagaggggaagatacattggaaacagttaatgcagaaggcagggaaaatagg
aggaaagcaggccacagggcagcaggatcatctgcctcacggcgatgtagaaacacagga
aggagtgtgcaaagactaaggccccagaagacccaggctttcccgacccactgccacttc
tgcctcatcttagtggtcaaagctacacagctaaacccaaaatcaagggtgaggaaagtt
ccctttgcccccatgaaacatggcaaagcactggcagggccatgggctaatatatgtgct
ggcaagtcttccaatgagatccggacgtgtgaccgccatggctgtggacagtactctgct
caaagaagtcagaggcctcaccagggtgtggacatcttgtgctctgctggatctactgtg
tacgcaccattcactggaatgattgtgggccaggagaaaccttatcaaaacaagaatgct
atcaataatggtgttcgaatatctggaagaggtttttgtgtcaaaatgttctacattaag
ccaattaagtataaaggtcctattaagaagggagaaaaacttggaactctattgcccttg
cagaaagtttatcctggcatacaatcgcatgtgcacattgaaaactgtgactcgagtgac
cctactgcatacctgtaa

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_7|104_aa
MRGKPPPHSRKHKLPSLLAFKAEEGHSPACQPAGHGVTLWGHTPCRLHTAPLSKHGPTEV
NEKQMGSRVLGRRHEVSNKYEGIIIWMKCQRTIVQAMLPAVAFD

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_7|315_bp
atgagggggaaaccacccccacactctaggaaacacaagctccccagcctcttggccttc
aaggcagaggagggccactccccagcctgccagccagcaggccatggggtcaccctgtgg
ggccacaccccatgcaggctgcatactgccccattgtctaagcatggccccactgaagtc
aacgagaaacagatgggaagccgggtcctgggaagaaggcatgaagtttctaacaaatat
gaaggcatcatcatctggatgaagtgtcagaggaccatagtccaggcaatgctgcctgct
gtggcttttgattag

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_8|58_aa
MPHAKEVPLPMCPNMHQMVKQARFLCLLENDKSGCIRYILYMKDGTLVLPKGLFKMPP

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_8|177_bp
atgccccatgccaaggaagtacctctccccatgtgtccaaacatgcaccagatggtgaag
caggcgaggttcctctgcctcctggaaaacgacaagagtggatgtattaggtacatcctg
tacatgaaggatgggaccctggttttaccaaaaggtcttttcaaaatgcctccatga

>gi568815593r:135847334_136054833|GENSCAN_predicted_peptide_9|443_aa
MALFVRLLALALALALGPAATLAGPAKSPYQLVLQHSRLRGRQHGPNVCAVQKVIGTNRK
YFTNCKQWYQRKICGKSTALGTADVKGVSSLAVSVSDLGGEQMRKLRPREMMKLAEDGPA
ALPLSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSL
VSNVNIELLNALRYHMVGRRVLTDELKHGMTLTSMYQNSNIQIHHYPNGIVTVNCARLLK
ADHHATNGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLNTMLEGNGQYTLLA
PTNEAFEKIPSETLNRILGDPEALRDLLNNHILKSAMCAEAIVAGLSVETLEGTTLEVGC
SGDMLTINGKAIISNKDILATNGVIHYIDELLIPDSAKTLFELAAESDVSTAIDLFRQAG
LGNHLSGSERLTLLAPLNSVFKX

>gi568815593r:135847334_136054833|GENSCAN_predicted_CDS_9|1329_bp
atggcgctcttcgtgcggctgctggctctcgccctggctctggccctgggccccgccgcg
accctggcgggtcccgccaagtcgccctaccagctggtgctgcagcacagcaggctccgg
ggccgccagcacggccccaacgtgtgtgctgtgcagaaggttattggcactaataggaag
tacttcaccaactgcaagcagtggtaccaaaggaaaatctgtggcaaatcaacggcactg
gggacagctgacgtgaagggggtatcaagcctggcagttagtgtcagcgacttaggaggt
gaacaaatgaggaaactgagacccagagagatgatgaaattggctgaggatggcccagct
gccctaccactctcaaacctttacgagaccctgggagtcgttggatccaccaccactcag
ctgtacacggaccgcacggagaagctgaggcctgagatggaggggcccggcagcttcacc
atcttcgcccctagcaacgaggcctgggcctccttgccagctgaagtgctggactccctg
gtcagcaatgtcaacattgagctgctcaatgccctccgctaccatatggtgggcaggcga
gtcctgactgatgagctgaaacacggcatgaccctcacctctatgtaccagaattccaac
atccagatccaccactatcctaatgggattgtaactgtgaactgtgcccggctgctgaaa
gccgaccaccatgcaaccaacggggtggtgcacctcatcgataaggtcatctccaccatc
accaacaacatccagcagatcattgagatcgaggacacctttgagacccttcgggctgct
gtggctgcatcagggctcaacacgatgcttgaaggtaacggccagtacacgcttttggcc
ccgaccaatgaggccttcgagaagatccctagtgagactttgaaccgtatcctgggcgac
ccagaagccctgagagacctgctgaacaaccacatcttgaagtcagctatgtgtgctgaa
gccatcgttgcggggctgtctgtagagaccctggagggcacgacactggaggtgggctgc
agcggggacatgctcactatcaacgggaaggcgatcatctccaataaagacatcctagcc
accaacggggtgatccactacattgatgagctactcatcccagactcagccaagacacta
tttgaattggctgcagagtctgatgtgtccacagccattgaccttttcagacaagccggc
ctcggcaatcatctctctggaagtgagcggttgaccctcctggctcccctgaattctgta
ttcaaagnn