GENSCAN 1.0	Date run:  8-Nov-116	Time: 16:00:33

Sequence gi568815593f:6637544_6854942 : 217399 bp : 45.28% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -   2104   2099    6                               1.05
 1.01 Sngl -   9806   9312  495  2  0   22   42   194 0.458   4.25
 1.00 Prom -  14522  14483   40                              -2.26

 2.00 Prom +  27185  27224   40                              -4.26
 2.01 Sngl +  29209  29541  333  0  0   33   41   256 0.501   9.42
 2.02 PlyA +  31067  31072    6                               1.05

 3.00 Prom +  33333  33372   40                              -6.56
 3.01 Init +  35861  35936   76  1  1   74   44   137 0.242   9.15
 3.02 Intr +  66666  66832  167  1  2   70   19   159 0.342   6.88
 3.03 Intr +  75525  75732  208  2  1   17   33   129 0.006  -1.05
 3.04 Intr +  76025  77156 1132  0  1    9   84  1098 0.136  90.00
 3.05 Intr +  99967 100090  124  1  1   75   76    84 0.892   6.49
 3.06 Intr + 101140 101186   47  0  2   82   95     6 0.880  -2.09
 3.07 Intr + 102189 102309  121  0  1   57  113   191 0.993  19.00
 3.08 Intr + 104947 105054  108  0  0   43   79    75 0.712   2.58
 3.09 Intr + 108671 108884  214  1  1   43  110   247 0.941  20.69
 3.10 Intr + 110921 111047  127  0  1   50   90   182 0.981  14.34
 3.11 Intr + 112014 112114  101  0  2   85   72    96 0.999   7.45
 3.12 Intr + 112788 112960  173  1  2  105   81   158 0.997  16.46
 3.13 Term + 113496 113735  240  2  0   40   45   176 0.912   4.53
 3.14 PlyA + 114145 114150    6                              -3.44

 4.00 Prom + 114224 114263   40                              -2.56
 4.01 Init + 114795 115009  215  2  2   39   67   174 0.563   8.62
 4.02 Intr + 115383 115494  112  0  1   96   75    74 0.982   7.28
 4.03 Intr + 117208 117289   82  0  1  100   53   120 0.325   8.91
 4.04 Intr + 121337 121516  180  0  0   66   89    54 0.473   3.14
 4.05 Term + 123677 123735   59  0  2  118   42    67 0.526   2.95
 4.06 PlyA + 126441 126446    6                               1.05

 5.07 PlyA - 126678 126673    6                               1.05
 5.06 Term - 130834 130618  217  0  1   32   55    96 0.365  -2.68
 5.05 Intr - 131254 131153  102  0  0  106   35   133 0.629   9.09
 5.04 Intr - 132630 132447  184  1  1   82   91    59 0.691   4.45
 5.03 Intr - 136175 136011  165  0  0   34   59   124 0.703   4.03
 5.02 Intr - 137620 137380  241  1  1  104   61   131 0.980   9.12
 5.01 Init - 138730 138644   87  1  0   60   13   140 0.899   2.78
 5.00 Prom - 139939 139900   40                              -5.86

 6.00 Prom + 144062 144101   40                              -6.36
 6.01 Init + 151373 151535  163  1  1   67   81   104 0.516   7.50
 6.02 Intr + 153533 153661  129  0  0   58   41    73 0.269   0.27
 6.03 Intr + 153925 153956   32  2  2  137   94     1 0.162   3.45
 6.04 Intr + 164069 164127   59  1  2  115  101    -7 0.082   0.98
 6.05 Intr + 165409 165523  115  1  1   36   92    76 0.113   3.25
 6.06 Intr + 173207 173275   69  1  0   45   71    78 0.030   1.18
 6.07 Intr + 175508 175589   82  1  1   74   68    84 0.553   4.21
 6.08 Term + 177131 177204   74  0  2  122   38    47 0.622   1.17
 6.09 PlyA + 180562 180567    6                               1.05

 7.06 PlyA - 180713 180708    6                               1.05
 7.05 Term - 184798 184519  280  0  1   64   40   126 0.700   0.32
 7.04 Intr - 186727 186537  191  1  2   12   99   115 0.223   3.38
 7.03 Intr - 199791 199666  126  0  0   37  105    33 0.010   0.78
 7.02 Intr - 206208 206075  134  1  2  110   83    -6 0.020   1.46
 7.01 Intr - 210792 210654  139  0  1   73   45    75 0.045   1.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_1|164_aa
MRQKINKDIQDLNSALDQVDLVDIYRTLHPKSTEYTLFSAPHHTYSKIDHMVGSKTLLNK
CKRMEIITNSLLYHSAIKLELKIKKLTQNHTTTWKLNNLLLNDYWINNKMKAEIKMFFKT
NKNKDTTYQNLWDTFKAVCRGKFIALNARKRKQERSKIDTLTHN

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_1|495_bp
atgagacagaaaattaacaaggatatccaggacttgaactcagctctggatcaagtggac
ctagtagacatctacagaactctccaccccaaatcaacagaatatacactcttctcagca
ccacatcacacttattctaaaattgaccacatggttggaagtaaaacactcctcaacaaa
tgcaaaagaatggaaatcataacaaacagtctcttatatcacagtgcaatcaaattagaa
ctcaagattaagaaactcactcaaaaccacacaactacatggaaactgaacaacctgctc
ctgaatgactactggataaataacaaaatgaaagcagaaataaagatgttctttaaaacc
aataagaacaaagatacaacataccagaatctttgggacacatttaaagcagtgtgtaga
gggaaatttatagcactaaatgcccgcaagagaaagcaggaaagatctaaaatcgacacc
ctaacccacaattaa

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_2|110_aa
MFFLMSRSPALLPSLVGGRVFSASCGSPVFPISHLPSRVCPFQALLLSCTLPLPFRARVP
IFPRAVSGREALTCYVTVRRPVPLAHGEALQHLQVLDGLDPSRPVNTFSL

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_2|333_bp
atgttctttctgatgtcacggagcccagccttgctgcccagcctggtgggggggcgcgtt
ttctcggcatcctgcggcagtcctgtgtttcccatctcccacctgccctctcgtgtttgc
ccatttcaggctctcctgctgtcatgtactctgcccttgccttttcgggccagggtgccc
atcttcccacgggcagtttctgggagagaggcgctcacctgctatgtcactgtgcggcgg
ccagtgccgctggcccatggggaagctcttcagcacttgcaagtgctggatggcctggat
cccagcaggcctgtgaacaccttcagcctctaa

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_3|945_aa
MAKIQKTDITNASENVEQQELSFTAAIIRVMAKIQKKTAKIQKESKITSSIFLNKQPTGD
LVRAPAIAYACPSGGTEFTGKRACLHAGVCAPRRAEGGVRAFQPLPIPPNAGLVSNGSTP
PPLPPAPPSRVASDAVLTPPAADGAPTRRRAARRLGPPPRPRRPPFSDGLSPRPEWNAAA
AAAPAPAPRRVKREPGDRSRPLGRAKRRSRPPRPAGAHHRRRRPTPEPDGSAARAGGRGS
ARPPPPPPPPPPAQARPSVRARAAGPRGAAGAGPRRGGRARGPRGGGAWMDPRVAWIQPE
QKGPANALWMQIWETSQGVGRGGSGFASYFCLNSPALDTAAAAGAAGRGSGGLGPALPAA
SPPPPGPTAPAALPPALLTALGPAAEGARRLHKSPSLSSSSSSSSSNAESGTESPGCSSS
SSSSASLGRPGGGRGGAFFNFADGAPSAPGTANGHPGPRGPAPAGSPSQHQFHPGRRKRE
NKASTYGLNYLLSGSRAAALSGGGGPGAQAPRPGTPWKSRAYSPGIQGLHEEIIDFYNFM
SPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPL
QLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYM
KLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYIAKEEIMKAMTSGYR
PSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDAESTLGRI
IKVTQEVIDYRRWIKEKWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLT
LSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQFSLQAPAPLMAGLPTALPMP
SGKPQPTTSRTLIMTTNNQVRGPLAPFPLVAPGNSIRAVICTRGD

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_3|2838_bp
atggccaaaatccagaagactgacatcaccaatgctagtgagaatgtggagcaacaggaa
ctctcattcacggctgccatcatccgtgtaatggctaaaattcagaagaaaacggctaaa
attcagaaggaaagtaaaattacaagcagcatttttctcaacaaacagcccactggtgac
ctcgtgagggcaccagccatcgcctatgcctgtccttctggtggcacagaattcactgga
aagcgcgcatgtctgcacgccggggtctgcgcgccgcggcgggccgagggcggcgtgcgg
gccttccagccgctgcctattccacccaacgccggcctagtcagtaatggctcaacgcca
ccgcctctccctccagcccctcccagtcgcgtagcttctgacgccgtcctcaccccgccc
gcggccgacggggccccaacgcgcaggcgcgccgctcggcgcctgggcccgccccctcgg
ccccgccgcccgcccttctccgatggcctctccccgcggcccgagtggaacgccgccgcc
gccgcggcccccgcgcccgccccgcgccgcgtgaagcgggagcccggagaccgcagccgc
ccgctgggacgcgccaagcgccggagccgcccgccgcggcctgccggggcccatcaccgc
cgccgccgccccacgccggagcccgacgggagcgcggctagagcaggaggccggggctcg
gcccgcccgccgccgccgccgccgccgccgccaccggcccaggcccgtccgtccgtccgt
gcgcgcgcggccgggcctcggggcgcggcgggggcggggccgcgtcggggcgggcgggcg
cgcgggccccgcgggggcggcgcgtggatggatccgcgcgtggcctggatccagcccgag
cagaaggggccggccaatgccctgtggatgcagatctgggagacctcgcagggcgtgggc
cgcggcggctcgggcttcgcgtcctatttctgcctcaactcgccggcgctggacacggcg
gccgcggcgggggcggccgggcggggcagtggcggcctgggccccgcgctgcccgccgcg
tcgcccccgccgcccggccccaccgcgcccgccgcgctgccccccgcgctgctgacggcg
ctggggcccgcggccgagggcgcgcggcgcttgcacaagtcgccgtcgctgtcgtcctcg
tcgtcgtcctcctcgtccaacgcggagtcgggcaccgagagccccggctgctcgtcgtcg
tcctccagcagcgcctcgctgggccggccgggcggcggccgcggcggcgccttcttcaac
ttcgccgacggcgcgcccagcgcccctggcacagccaacgggcaccccgggccgcgcggc
cccgcgcccgccggctccccgtcgcagcaccagttccacccgggtcgccggaaacgcgag
aacaaggccagcacctacggcctcaactacctgctgtccggcagccgcgcggccgctctc
agcggagggggcggccccggggcccaggcgccgcggcccggcaccccgtggaagagccgc
gcgtacagcccgggcatccagggactacatgaggaaataattgacttttataacttcatg
tccccttgtcctgaagaagcagctatgagaagagaggtggtgaaacggatcgaaactgtg
gtgaaagacctttggccgacggctgatgtacagatatttggcagctttagtacaggtctt
tatcttccaactagcgacatagacctggtggtcttcgggaaatgggagcgtcctccttta
cagctgctggagcaagccctgcggaagcacaacgtggctgagccgtgttccatcaaagtc
cttgacaaggctacggtaccaataataaagctcacagatcaggagactgaagtgaaagtt
gacatcagctttaacatggagacgggcgtccgggcagcggagttcatcaagaattacatg
aagttgcatccaagaattgatgcccggagagctgatgaaaaccttggaatgcttcttgta
gaattttttgaactctatgggagaaattttaattacttgaaaaccggtattagaatcaaa
gaaggaggtgcctatatcgccaaagaggagatcatgaaagccatgaccagcgggtacaga
ccgtcgatgctgtgcattgaggaccccctgctgccagggaatgacgttggccggagctcc
tatggcgccatgcaggtgaagcaggtcttcgattatgcctacatagtgctcagccatgct
gtgtcaccgctggccaggtcctatccaaacagagacgccgaaagtactttaggaagaatc
atcaaagtaactcaggaggtgattgactaccggaggtggatcaaagagaagtggggcagc
aaagcccacccgtcgccaggcatggacagcaggatcaagatcaaagagcgaatagccaca
tgcaatggggagcagacgcagaaccgagagcccgagtctccctatggccagcgcttgact
ttgtcgctgtccagcccccagctcctgtcttcaggctcctcggcctcttctgtgtcttca
ctttctgggagtgacgttgattcagacacaccgccctgcacaacgcccagtgtttaccag
ttcagtctgcaagcgccagctcctctcatggccggcttacccaccgccttgccaatgccc
agtggcaaacctcagcccaccacttccagaacactgatcatgacaaccaacaatcaggta
cgtggccctctggcacccttcccgctggtggcccctgggaacagcatccgagctgtgata
tgcactagaggagattga

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_4|215_aa
MHGMPRCNQVSIASLRKGVLVSALLLLTVTGDADIEAAWDLDSRQGRNCQPSHGLSGHQL
GQPWAVTPEFSVQAGVEGTASLKAVHHMSSPAIPSASPNPLSSPHLYHKQHNGMKLSMKG
SHGHTQGGGYSSVGSGGSRVPPLYPVRYAEDPVNAVPRMPRPGREPYAGEVVTFVIQTSF
RCDWVTCDALSPENFSGLPDLENENAKLQVKFEFK

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_4|648_bp
atgcacgggatgccaagatgcaaccaggtcagtattgcaagtctgagaaaaggggttctc
gttagcgcacttctgctgctgacagtaacgggtgatgctgacatagaagcagcctgggac
ctggacagcaggcaaggaaggaactgccagccgtcccacggcctctcaggccaccagttg
ggccagccttgggctgtgacccctgagttcagcgtacaagctggtgtagaaggaactgcg
tctttgaaagccgtccaccacatgtcttccccggccattccctcagcgtcccccaacccg
ctctcgagccctcatctgtatcataagcagcacaacggcatgaaactgtccatgaagggc
tctcacggccacacccaaggcggcggctacagctctgtgggtagcggagggtctcgagtg
ccacctctctaccctgtgagatacgcagaggaccctgtaaatgccgtgccccgcatgcct
cggcctgggcgtgagccgtacgcgggggaggtggtgacgtttgtaatccagacgtcgttt
cgttgcgactgggtcacctgtgatgccctaagccctgagaacttttcaggattgccagat
ttagaaaatgaaaacgcaaaactccaagttaaatttgaatttaagtag

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_5|331_aa
MTRQHVQATIQILLNGALALVVGAATLCLLVITFFHNITARDRLSFSNSFLQENLILISA
RRHILLWGAAGKATDVAGAVGRDQLHHQIPTTLLTPVSRRKLPECGGRQGEIQTYVHTKN
LRVNVPSGILQKSHKVEATGNPISGCEDRGRWRSRTAGIIRAETDPASSSQKSKEAKTQG
GNQPAPGHRGHPAYGQQPKPHAVAPAKLASHVLSPFLCQNRTESPRVPDELNTKCSEALA
TGISVHQQPGPFRVDALTNGSAGCTGSMAPTFASGEDLGSFHSWQEAKGEQVPHLAREGA
REREEVPGSLNNQNLRELVVRTHYHEDSSNH

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_5|996_bp
atgacacggcagcacgtccaggcgaccatccagatccttctgaacggagccctcgcactg
gttgttggtgctgccactctttgtctgcttgtcatcactttctttcacaacatcactgca
cgtgaccggctttccttcagcaactctttcttacaagaaaacctgattctcatctctgct
aggcggcacatccttttgtggggagctgcgggaaaagccactgatgtggcgggggctgtg
ggcagggaccagctccatcaccagattccaaccacgctgctgaccccagtgtcacgcagg
aaactccccgagtgcggtggacgacagggagaaatacaaacatacgtccacaccaaaaac
ctgcgtgtgaatgttcctagcggcattcttcaaaagagccacaaagtggaagcgaccgga
aatcccatcagcggatgcgaggacagaggaaggtggcgcagcaggacagctggcatcatt
cgagcggaaacggatccagcttcctcctcccagaagagcaaagaggcaaaaacacaaggc
ggaaatcagccagcccctggccacagaggacatcctgcctatgggcagcagcccaagcca
catgcagtggcccccgccaagcttgctagccatgtcctttcccccttcctgtgccagaac
aggacagagtctcccagagtccccgatgagctgaacaccaaatgctcggaggccctggcc
acagggatcagtgtccaccagcaacctggtccattcagggtggacgctttgaccaatggt
tctgcaggctgtacaggaagcatggcaccaacatttgcatctggtgaggacttgggaagc
ttccactcatggcaggaggcaaagggggagcaggtgcctcacctggcgagagaaggagcc
cgagagagggaggaggtgccaggctctttaaacaaccagaacttgcgtgaactcgtagtg
agaactcattaccacgaggacagcagcaaccactga

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_6|240_aa
MNPTFVVIQDEVLQKITGQCSVNIERGWWALDIQPNSGFPNLLLRVMRSEPIRKAFSLDL
CNHNPISSPCSDNSAAKRGAAIKIKSLQLQGQTHQPPALATLSHHLLQMGPSSCRKTSSG
FPLNSTLWKVVSEEKRKRVEASFRMEEKKTVGVGQVPFDGVWSLQQLRVKKLDMEVVRNS
SVVAAAKWQMVPPEDLDPSTTLGKMVTFWQQGQLVHCTGVLEPAVTSVPNFTLANIKSVT

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_6|723_bp
atgaacccgacatttgtagttatccaagatgaggtgctccaaaaaatcacgggccagtgt
tcagtgaacatcgaacgtggttggtgggctctagatattcagccgaattcaggatttcct
aacctcctgctgcgggtgatgcgttcagagcccatcaggaaagccttctccctggacctc
tgcaaccacaaccccatctcctctccctgctctgataactctgctgcaaagagaggagca
gcaatcaaaataaaatccctgcagctccagggccaaacgcaccagccgccggccctggcc
acgctttcccatcacctcctccagatgggaccatctagttgcagaaaaacaagctcaggg
ttcccactgaattctacattatggaaggtggtcagtgaagagaagaggaagagagtagaa
gcttcttttaggatggaggagaagaagacagttggagtgggacaagtcccatttgatggt
gtgtggtcgctacagcagttacgggtgaagaagctggacatggaggtagtaaggaactcg
tcagtggtggctgctgctaagtggcagatggttcctcctgaggacctggatcctagcacc
acccttggaaaaatggtgactttctggcagcaaggccagctggtgcattgcacaggtgtg
ctggagccagctgtgacctctgttcctaacttcacgctcgcgaacattaagtcagtcact
taa

>gi568815593f:6637544_6854942|GENSCAN_predicted_peptide_7|289_aa
LCARSKRTTIPDRGGLVFSQGYTSSCAPLLEPPKKLSKEDLQTANKSSLHTDCSQAPLQP
LSCPQLALLALVQVHNSSRPSYTQRPPHPHKEQLLCLATAMKVHCCLLHSDFGSSCVCST
PAPIAAANLGEMEKYTRNCIGAQEHQLAGPSEAAEAGDVQVSSMKQKIKEEPGRDQSKKK
SSVYAEKSQHRVIPPRSQGNCERLDCAPPRCEAATLLFQKPWVPSPSSWLCSHLTDVGWS
ITVAIASSRATDRMHDFPPEPVSVCLPVAPSHQAGKSAFYVLKQMQLCL

>gi568815593f:6637544_6854942|GENSCAN_predicted_CDS_7|870_bp
ctgtgtgctcggtcgaagaggacgaccatacccgatagaggaggactggtcttcagtcaa
gggtatacgagtagctgcgctcccctgctagaacctccaaagaagctctcaaaagaagac
ctacaaacagccaacaaatcctctctccacactgactgttctcaagcccccttgcagccc
ttgagctgcccacagctagccctgctagccctggtccaggttcacaatagctctagacct
tcctatacacagagaccgccccatccccacaaggagcagttgctctgtctggccacagcc
atgaaagtgcactgttgtcttttacactcagactttgggtccagctgtgtttgcagcacc
ccagcccccatagcagctgccaatctgggggagatggagaaatatacccggaattgtata
ggagctcaggaacatcaacttgcagggccatcggaagctgctgaggctggagacgttcag
gtgagctccatgaaacagaagatcaaagaagagccggggcgggatcagagcaagaaaaag
agctctgtttatgccgagaagtcgcagcacagagtgataccacccaggagccaaggcaac
tgtgagaggctggactgtgcacctccacgctgtgaagcagcaactctcctgtttcagaaa
ccatgggttccatcgcccagctcctggctctgctcccacttaacagacgtgggttggagc
atcactgtggccatcgcatcctcgcgtgcaacagacaggatgcacgatttccctccagag
cctgtgtcagtctgcttgcctgtggcaccttcacaccaagcagggaagtctgcattttat
gtcttgaagcaaatgcagctgtgcttatag