GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:38:11

Sequence gi568815594r:155828333_156053847 : 225515 bp : 36.95% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -    906    901    6                               1.05
 1.10 Term -   2493   2314  180  0  0   25   38   178 0.711   3.13
 1.09 Intr -   3583   3514   70  0  1  113  101    27 0.671   4.77
 1.08 Intr -   8525   8357  169  0  1  107   91    57 0.965   5.98
 1.07 Intr -  12282  12240   43  0  1   24   50    92 0.425  -4.11
 1.06 Intr -  15498  15349  150  0  0   38   94   136 0.871   8.64
 1.05 Intr -  15966  15814  153  0  0   74   76   137 0.955  10.45
 1.04 Intr -  25917  25745  173  1  2   23   92   109 0.719   3.54
 1.03 Intr -  26545  26418  128  0  2   77   80   118 0.729   9.30
 1.02 Intr -  35422  35116  307  2  1    7   98   222 0.664   9.68
 1.01 Init -  37894  37855   40  1  1   50  113    23 0.661   1.40
 1.00 Prom -  41628  41589   40                              -6.05

 2.02 PlyA -  42224  42219    6                               1.05
 2.01 Sngl -  50689  50354  336  1  0   64   41   242 0.715  12.88
 2.00 Prom -  52760  52721   40                              -8.15

 3.00 Prom +  53185  53224   40                              -7.75
 3.01 Init +  54510  54526   17  2  2   90   57     8 0.099  -2.22
 3.02 Term +  64010  64295  286  2  1   98   43   223 0.706  12.69
 3.03 PlyA +  64366  64371    6                               1.05

 4.00 Prom +  65364  65403   40                              -6.25
 4.01 Init +  67425  67491   67  2  1   26   86    72 0.004   2.09
 4.02 Intr +  75712  75791   80  2  2   21  103   126 0.005   5.75
 4.03 Intr +  76735  76825   91  0  1   36  115    44 0.889   0.55
 4.04 Intr +  79390  79460   71  2  2   69  103    51 0.855   2.68
 4.05 Intr +  80555  80682  128  1  2  115   69   157 0.999  15.06
 4.06 Intr +  81693  81879  187  0  1   51   64   145 0.865   7.17
 4.07 Intr +  85991  86106  116  1  2   67   68   165 0.792  10.73
 4.08 Intr +  89063  89142   80  2  2  119   95    60 0.913   8.08
 4.09 Intr +  89817  89907   91  1  1   16   92    71 0.725  -1.57
 4.10 Term +  91505  91658  154  2  1   71   38   121 0.766   1.81
 4.11 PlyA +  92048  92053    6                               1.05

 5.11 PlyA -  92337  92332    6                               1.05
 5.10 Term -  97233  97082  152  1  2   51   44   109 0.473  -0.11
 5.09 Intr - 100096 100004   93  2  0   75  103    57 0.749   4.92
 5.08 Intr - 101373 101210  164  2  2   63  111    30 0.487   1.50
 5.07 Intr - 104335 104183  153  0  0   13   92   102 0.246   1.37
 5.06 Intr - 106231 106097  135  0  0  120  -11    80 0.112   0.06
 5.05 Intr - 109151 109030  122  2  2   73  103    64 0.983   4.77
 5.04 Intr - 111206 111039  168  2  0   77   57   115 0.917   6.52
 5.03 Intr - 114124 113985  140  2  2   57   88    44 0.497   0.56
 5.02 Intr - 114932 114824  109  2  1   97   75    39 0.542   2.44
 5.01 Init - 125515 125381  135  1  0  100   53   273 0.464  23.19
 5.00 Prom - 138870 138831   40                              -2.35

 6.00 Prom + 144178 144217   40                              -2.45
 6.01 Init + 152832 152893   62  2  2   84   94    45 0.673   5.47
 6.02 Intr + 153235 153293   59  1  2   87  115    52 0.544   5.41
 6.03 Term + 181684 181838  155  2  2   80   49   112 0.354   3.60
 6.04 PlyA + 182025 182030    6                               1.05

 7.00 Prom + 182668 182707   40                              -8.25
 7.01 Sngl + 185500 185784  285  0  0   68   48   840 0.969  73.29
 7.02 PlyA + 187148 187153    6                               1.05

 8.03 PlyA - 187309 187304    6                               1.05
 8.02 Term - 190248 190174   75  0  0   89   43    82 0.973   0.66
 8.01 Init - 191407 191279  129  1  0   70   76   132 0.990  10.40
 8.00 Prom - 205286 205247   40                              -0.45

 9.00 Prom + 208850 208889   40                              -7.35
 9.01 Init + 210658 210748   91  0  1   50   52   134 0.450   6.70
 9.02 Intr + 210909 211056  148  1  1   48   96   101 0.902   5.27
 9.03 Term + 211077 211287  211  0  1   18   49   122 0.812  -2.92
 9.04 PlyA + 211773 211778    6                               1.05

10.04 PlyA - 213290 213285    6                               1.05
10.03 Term - 216474 216365  110  1  2   68   53    99 0.484   2.09
10.02 Intr - 219485 219472   14  1  2  106   94    -2 0.368  -4.29
10.01 Init - 221191 220122 1070  1  2   48   53   285 0.264  14.85

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  67231  67695  465  0  0   10   38   247 0.805   7.79
S.002 Intr +  75686  75791  106  2  1   74  103   131 0.990  12.50
S.003 Sngl - 165366 165172  195  0  0   37   49   182 0.855   4.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_1|470_aa
MEQTEKSKVYAENGLLEKIKLCLSKKPLPSPTERKKFDHDFAISTSFHGIHNIVQNRSKI
RRVLWLVVVLGSVSLVTWQIYIRLLNYFTWPTTTSIEVQYVEKMEFPAVTFCNLNRSHSY
LTQYLKKLKEKVTKELEELWSWLLPDTSKLSQQMDCSVVLHLQEITANSTGSREATDFAA
SHQNFSIVEFIRNKGFYLNNSTLLDCEFFGKPCSPKRMNLRPPNEKQWKIRDPWRKEFLE
FSNRPIGLGYKVPKLVPSTDRLAAAGQEAFTDNPALGFVDAGIIFVIHSPKKVPQFDGLG
LLSPVGMHARVTIRQVKLVQRTPKNEQGQLGDHIEFKDLCTVGTHNSSCPVSCEEIEYPA
TISYSSFPSQKALKYLSKKLNQSRKYIRENLVKIEINYSDLNYKITQQQKAHCWSNQIQR
QKVKEWLSWAEERKDEELEFNAYRVSVREDENILQIDKDYGMAAKQCERT

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_1|1413_bp
atggagcagacagaaaaatcaaaagtatatgctgagaacggactcttagaaaagataaag
ctttgcctttcaaagaaaccactgccatctcccactgagcgaaagaagtttgaccatgac
tttgccatctccacttcctttcatgggatacacaatattgttcagaaccggagcaaaatt
cgcagggtgctctggttggtggtggttctgggctcagtctcacttgtgacatggcagatc
tacattcgcttgctcaactacttcacatggccaaccacaacgtccattgaggttcaatat
gtggaaaagatggagttcccagctgtgacattttgtaatttgaacaggtcgcactcttac
ctaacccagtatttgaagaagctgaaggaaaaggtcacaaaggagctggaggagctgtgg
tcctggctgctgcccgatactagcaagttgagtcagcagatggattgcagtgtggtcctc
catcttcaagaaattactgccaattccactggctctagagaggctactgattttgctgca
agtcaccaaaacttcagcattgtggaatttatcaggaacaaaggtttttatctcaacaat
agcactttgttggactgtgagttttttggaaagccatgtagcccaaagcgaatgaacctc
agacccccaaatgaaaaacaatggaagatcagggatccctggaggaaagagttcctggag
ttcagcaatcgtcctattggtttgggctataaggtgcccaagctggtaccaagcactgat
aggctagctgctgcaggccaggaggcattcactgataacccagcccttggtttcgttgat
gctgggatcatctttgttatccattcaccaaagaaggtgccacagtttgatgggttaggc
ttgttgtcacctgtgggaatgcacgcaagggtaaccatccgccaagtgaagttagttcag
cgaacgcccaagaatgaacaaggacagcttggagaccacattgaatttaaggatttatgt
acagtaggaacacataactctagctgccccgtttcttgtgaagaaatagaatacccggcc
actatttcttattcctcttttccaagtcaaaaagctttgaaatatctttccaagaagttg
aatcaaagccggaaatacatcagggagaatcttgtaaaaattgaaattaactatagtgac
ctaaactataagataacccagcagcaaaaggcgcactgctggagtaatcagattcagaga
cagaaagtaaaagagtggttgtcatgggccgaggagaggaaggatgaggagttagagttt
aatgcgtacagagtttcagttagggaagatgaaaacatcctgcaaatagataaagattat
ggaatggctgcaaaacaatgtgaacgtacttaa

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_2|111_aa
MRGSSSHRVPTGVLPSGVVRRGPKFSRPLNGRSTDSLHCVPEKAADTQCQPVKAARKGTA
PAKPQGQRCPKTMGTGLLHQYNVTVRHESKEIILELYNLTALLDFGLAWGL

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_2|336_bp
atgaggggttccagctcccacagagtccccactggagtattgcctagtggagttgtgaga
agagggccaaaattctccagacccctgaatggtagatccactgacagcttgcactgtgta
cctgaaaaagctgcagacactcaatgccagcctgtaaaagcagccaggaaggggacagcc
cctgcaaagccacaggggcagaggtgccccaagaccatgggaaccggcctcttgcatcag
tacaacgtgactgtgagacatgagtcaaaggagatcattttggagctttacaatttgact
gccttgctggattttggacttgcatggggcctgtag

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_3|100_aa
MEVKQRGRLTPLMARYLSETKLPEEQLGSNICCSAIFAVLQPPLLISRQTGSGVDLQQTP
TDLQLRVLTVRRKTNKQKGHPHQDKNYMMNAQASVANSIN

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_3|303_bp
atggaggtgaagcagaggggcagattgacacctctcatggccaggtacctctctgagaca
aagcttccagaggaacaactgggcagcaacatttgctgttcagcaatattcgctgttctg
cagcctccgctgctgatatccaggcaaacagggtctggagtggacctccagcaaactcca
acagacctgcagctgagggtcctgactgtcagaaggaaaactaacaaacagaaaggacat
ccacaccaagataagaactacatgatgaatgcacaagcttcagtagccaattcaatcaac
tag

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_4|354_aa
MEEYSMLMDRKTQYRENGHTGQEGSEEDKSQTGVNRASKGGLIYGNYLHLEKVLNAQELQ
SETKGNKIHDEHLFIITHQAYELWFKQILWELDSVREIFQNGHVRDERNMLKVVSRMHRV
SVILKLLVQQFSILETMTALDFNDFREYLSPASGFQSLQFRLLENKIGVLQNMRVPYNRR
HYRDNFKGEENELLLKSEQEKTLLELVEAKEESEEKEEQVAEFQKQKEVLLSLFDEKRHE
HLLSKGREEPRFQVPFQLLTSLMDIDSLMTKWRYNHVCMVHRMLGSKAGTGGSSGYHYLR
STVSDRYKVFVDLFNLSTYLIPRHWIPKMNPTIHKFLYTAEYCDSSYFSSDESD

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_4|1065_bp
atggaagaatattccatgctcatggacaggaagactcaatatcgtgaaaatggccatact
ggccaagaaggcagcgaagaagacaaatcacaaactggtgtgaatagagccagcaaagga
ggtcttatctatgggaactacctgcatttggaaaaagttttgaatgcacaagaactgcaa
agtgaaacaaaaggaaataaaatccatgatgaacatctttttatcataactcatcaagct
tatgaactctggtttaagcaaatcctctgggagttggattctgttcgagagatctttcag
aatggccatgtcagagatgaaaggaacatgcttaaggttgtttctcggatgcaccgagtg
tcagtgatcctgaaactgctggtgcagcagttttccattctggagacgatgacagccttg
gacttcaatgacttcagagagtacttatctccagcatcaggcttccagagtttgcaattc
cgactattagaaaacaagataggtgttcttcagaacatgagagtcccttataacagaaga
cattatcgtgataacttcaaaggagaagaaaatgaactgctacttaaatctgagcaggaa
aagacacttctggaattagtggaggctaaagaagagtctgaagaaaaagaggaacaggtg
gctgaatttcagaagcaaaaagaggtgctactgtccttatttgatgagaaacgtcatgaa
catctccttagtaaaggcagggaagagcctaggttccaggtgccttttcagttgctgact
tctcttatggacatagattcactgatgaccaaatggagatataaccatgtgtgcatggtg
cacagaatgctgggcagcaaagctggcaccggtggttcctcaggctatcactacctgcga
tcaactgtgagtgataggtacaaggtatttgtagatttatttaatctttcaacatacctg
attccccgacactggataccgaagatgaacccaaccattcacaaatttctatatacagca
gaatactgtgatagctcctacttcagcagtgatgaatcagattaa

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_5|456_aa
MDVRALPWLPWLLWLLCRGGGDADSRAPFTPTWPRSREREAAAFRESLNRHRYLNSLFPS
ENSTAFYGINQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVV
TQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALN
WLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFRVQPPSWLLSRSGIEC
LWLFQVHSASCQWIYHSGVWRTVALFSQLLAIPSKLVIVVFPDSLVEGASGDGNGDWACF
PGSRRKRAQGKNCRISLLQVGDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSS
GEANHAVLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCVSYISSPLRWRIYR
KDFKHQLLYLNKWCLPFEQQSDHVEGRKRAKSLQLN

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_5|1371_bp
atggacgtgcgggcgctgccgtggctgccgtggctgctgtggctgctgtgccggggcggc
ggcgatgcggactcccgcgcccccttcaccccgacctggccgcggagccgcgagcgtgaa
gccgccgccttccgggaaagtcttaatagacatcgatacttgaattctttatttcccagt
gaaaactccaccgccttctatggaataaatcagttttcctatttgtttcctgaagagttt
aaagccatttatttaagaagcaaaccttccaagtttcccagatactcagcagaagtacat
atgtccatccccaatgtgtctttgccgttaagatttgactggagggacaagcaggttgtg
acacaagtgagaaaccagcagatgtgtggaggatgctgggccttcagcgtggtgggggca
gtggaatctgcttatgcaataaaggggaagcccctggaagacctaagtgtccagcaggtc
attgactgttcgtataataattatggctgcaatggaggctctactctcaatgctttgaac
tggttaaacaagatgcaagtaaaactggtgaaagattcagaatatccttttaaagcacaa
aatggtctgtgccattacttttctggttcacattctggattttcaatcaaaggttattct
gcatatgacttcagggtacagcctccctcctggctgctttcacggtctggcattgagtgt
ctgtggcttttccaggtgcatagtgcaagctgtcagtggatctaccattctggggtctgg
aggacagtggccctcttctcgcagctccttgccatcccatccaagttggtgattgtcgtc
ttccctgattcattagttgagggtgcatctggggatggaaatggggactgggcttgcttt
cctggctctaggaggaaaagggctcagggaaagaactgcaggatctcattgttgcaagtt
ggtgaccaagaagatgaaatggcaaaagcacttcttacctttggccctttggtagtcata
gtagatgcagtgagctggcaagattatctgggaggcattatacagcatcactgctctagt
ggagaagcaaatcatgcagttctcataactgggtttgataaaacaggaagcactccatat
tggattgtgcggaattcctggggaagttcttggggagtagatggttatgcccatgtcaaa
atgggaagtaatgtttgtgttagttatattagcagccctctgagatggcgtatctatcgg
aaggatttcaaacaccaattgctttacctgaacaaatggtgcttaccctttgaacagcag
agtgaccacgtagaaggaaggaaaagggcaaaatcgcttcagttaaactga

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_6|91_aa
MRVKNVWGDWKNRHEATAMVSSSAVSVSVCRPRQFFECGPALLLQDIFILRRAALTDQKI
MPQTTSATSLLRPMIPLEVKALFPVAQVEIS

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_6|276_bp
atgcgtgtcaagaatgtatggggagactggaagaacagacatgaagctactgctatggtg
agctcatcagctgtcagtgttagtgtttgtagaccaagacaattctttgaatgtggccca
gctttgcttcttcaggatattttcattctgcgaagagctgctctcactgaccagaaaata
atgccacaaacaacttcagcaacatccttactacggcccatgatcccactggaagtgaaa
gcattgtttcctgttgctcaagtagaaatatcttaa

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_7|94_aa
MPLHSSLGNKSETPSQKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
GEEEEEEEEEEEEEEEEEEEEEEEEGKKWEISRK

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_7|285_bp
atgccattgcactccagcctgggcaacaagagcgaaactccatctcaaaaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
ggagaagaagaagaagaagaggaggaggaggaggaggaggaggaggaagaggaagaggaa
gaggaagaggaagagggaaaaaagtgggaaataagtagaaaataa

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_8|67_aa
MSDSQRWLRIQAQIPSSVKDKREKEVEDSYGKVSRKSTLNTNKKASVMASYSAVVFIPTV
IREQSAR

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_8|204_bp
atgagtgactctcagaggtggcttagaattcaggctcaaataccatcttcagtcaaagac
aaaagagagaaggaagtggaggacagttatggaaaggtgtccaggaaaagtaccctaaac
accaataagaaagccagtgtgatggcctcctatagtgctgttgtgtttattccaacagtc
atacgagaacaatcagccagataa

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_9|149_aa
MPPPPEQVLVSVAEETHKQCTSQDSMQATPEPTQMRRNQKTNSGDMTKQGSIVPHKNHTN
SPEMDPNQEIPDLPEKELRREAPVKGKAQCKEIQKIIQEVKGEIFNEIDSINKKQAKLQE
TIETLIEMQNALERPSNKIEKNRRKKFRA

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_9|450_bp
atgccacctccaccggaacaggtgctggtatccgtggctgaagagacccacaaacagtgc
acatcacaggactctatgcaggcaacccctgagccaacccaaatgagaagaaaccagaaa
accaactctggtgatatgacaaaacaaggttctatagtaccccacaaaaatcacactaac
tcaccagaaatggatccaaaccaggaaatccctgatttacctgaaaaagaactcagaagg
gaggcaccagtgaaaggcaaagcccagtgtaaagaaatccaaaaaataatacaagaagtg
aagggagaaatattcaatgaaatagatagcataaataaaaaacaagcaaaacttcaggaa
acaatagagacacttatagaaatgcaaaatgctctggaaagacccagcaataaaattgaa
aaaaatagaagaaagaaattcagagcttga

>gi568815594r:155828333_156053847|GENSCAN_predicted_peptide_10|397_aa
MAGSNGISSSRSLRNRHTEIKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKL
PMTFFTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWYQ
NRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQWGKDSLFNKWCWENWLAIWRKLKLDPF
LTPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIGVGKDFMSKTPKAMATKAKIDKWD
LIKLKSFCTAKETTIRVNRQPTTWEKIFATYSSDKGLISRIYNELKQIYKKKTNNPIKKW
AKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTTMRYHLTPVRMAIIKKSGNNRYRQ
KAGYFLPSSIGLQVLQLLDSWAYTSGLPGALGSLATD

>gi568815594r:155828333_156053847|GENSCAN_predicted_CDS_10|1194_bp
atggctgggtcaaatggtatttctagttctagatccctgaggaatcgccacactgaaata
aaagaggacacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaatatc
atgaaaatggccatactgcccaaggtaatctacagattcaatgccatccccatcaagcta
ccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaa
agagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacacta
cctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtactggtaccaa
aacagagatatagatcaatggaacagaacagagccctcagaaataatgccgcatatctac
aactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggattccctattt
aataaatggtgctgggaaaactggctagccatatggagaaagctgaaactggatcccttc
cttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgttagacctaaa
accataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaag
gacttcatgtccaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggat
ctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacaggcaa
cctacaacatgggagaaaattttcgcaacgtactcatctgacaaagggctaatatccaga
atctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgg
gcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatg
aagaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccactatgagatat
catctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagatatcgccaa
aaagctgggtacttcctgccctcgagcattggacttcaagttcttcagcttttggactct
tgggcttacaccagtggtttgccaggggctcttgggtctttggccacagactga