GENSCAN 1.0	Date run:  8-Nov-116	Time: 00:34:15

Sequence gi568815594f:55246337_55470088 : 223752 bp : 40.31% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +  16951  17370  420  0  0   64   32   280 0.566  16.05
 1.02 PlyA +  17751  17756    6                               1.05

 2.08 PlyA -  18066  18061    6                               1.05
 2.07 Term -  22161  21944  218  1  2   15   40   180 0.329   2.22
 2.06 Intr -  23947  23777  171  2  0   88   49    78 0.179   2.89
 2.05 Intr -  26366  26298   69  0  0   74   93    50 0.462   2.34
 2.04 Intr -  34100  33838  263  1  2   91   59   163 0.326   9.91
 2.03 Intr -  45114  45077   38  0  2  113  103    12 0.410   1.34
 2.02 Intr -  45630  45549   82  2  1  102   65    45 0.413   2.32
 2.01 Init -  51254  51139  116  2  2   74   65    64 0.364   2.47
 2.00 Prom -  54826  54787   40                              -9.25

 3.00 Prom +  55594  55633   40                              -6.15
 3.01 Init +  55838  56062  225  1  0   74   75   146 0.643  10.42
 3.02 Term +  59140  59241  102  0  0  129   45    46 0.862   1.70
 3.03 PlyA +  59300  59305    6                               1.05

 4.03 PlyA -  61639  61634    6                               1.05
 4.02 Term -  77934  77821  114  0  0   66   43    78 0.680  -1.31
 4.01 Init -  81594  81529   66  0  0   95  103    80 0.924  11.32
 4.00 Prom -  83033  82994   40                              -3.75

 5.03 PlyA -  84726  84721    6                               1.05
 5.02 Term -  93252  92784  469  2  1   96   44   217 0.216  11.56
 5.01 Init -  96078  96071    8  0  2   45   93     0 0.458  -3.40
 5.00 Prom -  97363  97324   40                              -5.25

 6.00 Prom +  99176  99215   40                              -6.55
 6.01 Init + 100001 100221  221  1  2   94   76   194 0.895  14.95
 6.02 Intr + 105712 105871  160  1  1   46   79    74 0.014   1.37
 6.03 Intr + 106111 106161   51  0  0   43   81    87 0.021   1.69
 6.04 Intr + 113010 113152  143  2  2  110   86    41 0.095   4.33
 6.05 Intr + 117793 117935  143  1  2   22  101   130 0.051   6.78
 6.06 Term + 119127 119233  107  1  2   86   42    35 0.064  -3.71
 6.07 PlyA + 119773 119778    6                               1.05

 7.06 PlyA - 120003 119998    6                              -1.95
 7.05 Term - 120551 120237  315  2  0   56   42   267 0.508  12.86
 7.04 Intr - 135477 135389   89  1  2   42   84    59 0.543  -0.33
 7.03 Intr - 140087 139973  115  2  1   88   91   119 0.966  11.30
 7.02 Intr - 140554 140367  188  2  2   82   82    73 0.899   4.59
 7.01 Init - 141023 140936   88  2  1   58   62    88 0.901   4.05
 7.00 Prom - 145698 145659   40                              -4.25

 8.00 Prom + 146028 146067   40                              -7.25
 8.01 Init + 149854 150060  207  0  0   97   83   345 0.991  31.77
 8.02 Intr + 165278 165503  226  1  1   73  109   172 0.626  14.44
 8.03 Intr + 170736 170911  176  1  2   67   74   172 0.778  12.44
 8.04 Intr + 171467 171649  183  1  0   64  105    61 0.764   4.46
 8.05 Intr + 178202 178307  106  1  1   64  119    99 0.545   9.47
 8.06 Term + 185572 185636   65  2  2   58   47    53 0.029  -4.73
 8.07 PlyA + 186120 186125    6                               1.05

 9.14 PlyA - 187277 187272    6                               1.05
 9.13 Term - 189189 189079  111  0  0   78   42   113 0.624   3.28
 9.12 Intr - 192201 191946  256  2  1  112   91   247 0.995  23.92
 9.11 Intr - 196298 196096  203  2  2   74   63    49 0.880  -1.84
 9.10 Intr - 197560 197351  210  1  0   49   95   102 0.890   5.19
 9.09 Intr - 198443 198297  147  2  0    2   91   197 0.115  10.91
 9.08 Intr - 203160 203060  101  1  2   72  115    20 0.460   2.01
 9.07 Intr - 203896 203755  142  1  1   56   76    95 0.636   4.11
 9.06 Intr - 206793 206718   76  2  1   84   53   129 0.928   7.60
 9.05 Intr - 207488 207341  148  0  1   62   85    -1 0.614  -4.63
 9.04 Intr - 209667 209561  107  2  2   94   93    61 0.778   6.14
 9.03 Intr - 209964 209882   83  0  2   66   91    46 0.953   0.22
 9.02 Intr - 212674 212556  119  2  2   83   95    60 0.877   5.46
 9.01 Init - 215138 214901  238  2  1   64   78    77 0.188   2.52
 9.00 Prom - 216711 216672   40                              -3.25

10.00 Prom + 217056 217095   40                              -3.95
10.01 Init + 219977 219982    6  1  0   93   93     0 0.148   1.91
10.02 Term + 223113 223241  129  2  0   28   47   147 0.148   1.80
10.03 PlyA + 223331 223336    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 107355 107240  116  1  2   89   49   120 0.844   5.95
S.002 Term + 150575 150664   90  1  0   54   41   115 0.860   0.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_1|139_aa
MLMKDKGEREQELTQRAFNPRFWSDTGERRQGRTKTEARASDCSELCRSLSQANGKPQSK
DGPLKSFTLDRSGPAVALCHAQSLTASSLGKRPECECQDRTPKVQHLLGNRQLTPFYNAR
LLLKGDLSSISASLPQVDF

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_1|420_bp
atgcttatgaaggacaaaggagaaagggagcaggagctaacacagagagccttcaacccg
cgtttctggtctgacaccggtgaaaggagacagggaaggacaaagacagaagcaagagcc
tcagactgcagtgagctgtgtagaagtcttagccaggctaatgggaagcctcagagtaaa
gacggcccattgaaaagcttcacattggacagaagtggcccagctgtagcactttgtcat
gcccagtcactgactgcgagcagtctggggaaaaggcctgagtgtgaatgccaagacaga
actccaaaggtgcaacacctgctgggtaacaggcaacttactcccttctataatgcacgt
cttctcttgaagggagatctgagcagcatatctgcatcattgccacaggttgatttttaa

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_2|318_aa
MVDAPSPANLQCRRLISDCCASSEQGSVGVGPIKPGTGSFPPLSQEEKASIIPNSVILSH
IDYKAEDEFISQEASQTLMTQPACTQVIRSFTAHTKPVWWSLHTDSHESFSWSLRLGSLT
SHNTYDLLRLNYEEMENLNRPIMSKEIESVVKNLPTKKSPRLDDYPEYFLGNVKPSSAAG
ASVSWCSHSGMQQLCLGSSTPARLPMSFPSNCHSPRRQALELHPGPLVETGCNVSKRVEQ
WLLIYSAQSNPGKGSAQPSSDFSHMRDSKNCLTELTQPTEPREGRANDSFKPQSCGVVCY
QQQITGKITLGQEAKLLG

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_2|957_bp
atggtggacgccccttctcctgccaatctgcagtgtcgtaggttgatctcagactgctgt
gctagcagtgagcaaggctccgtgggtgtgggacccatcaaaccaggcacgggaagcttt
cctccactttcacaagaggaaaaagcatccattatccctaactctgttatactctcacac
attgattacaaagcagaggatgagttcatttcccaagaggcttctcagaccctcatgact
cagcccgcctgcacccaggtgattagaagctttactgctcacacaaagcctgtttggtgg
tctcttcacacggactcgcatgaaagcttcagctggtccctccgtttggggtccctgact
tcccacaacacatatgatctactaagactgaattatgaagaaatggaaaatctgaacaga
ccaataatgagtaaagagattgaatcagtagtcaaaaacctcccaacaaagaaaagccca
agattagatgattaccctgaatatttcctggggaatgtgaaaccttcatccgctgctggt
gcgagtgtgagctggtgcagccattctgggatgcagcagctgtgcctagggtccagcacc
cctgctaggcttccaatgagcttcccatccaactgccacagccctagacggcaggctctg
gagctccacccaggacccttggtggaaacaggatgtaatgtttccaagcgggtcgagcag
tggctgcttatctacagtgcccagtcaaaccctggaaaaggttcggcccagccatcatct
gactttagccacatgagagactccaagaactgcctcactgagctcactcaacccacagaa
ccacgagagggaagagcaaatgacagctttaagccacaaagttgtggggtggtttgttac
caacaacagataacaggaaaaattactctgggacaagaagccaaacttctaggctag

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_3|108_aa
MKTLEENLGNTIQDIGMGKDFMTKAPRAMATKAKIDKWDLIKLKSFCTAKETTIRVKRQP
TEWEKIFAIYPSDKEISPISLQETAANAPSVSVVCLGLPGHTHFQDWA

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_3|327_bp
atgaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaagac
ttcatgactaaagcaccaagagcaatggcaacaaaagccaaaatagacaaatgggatcta
attaaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaagaggcagcct
acagaatgggagaaaatttttgcaatctacccatctgacaaagagatatcacccatttcc
cttcaggaaacagcagccaatgcaccttcagtttctgtggtttgcttagggctgcctggc
catactcactttcaggactgggcatag

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_4|59_aa
MEEKRERAKQYDARRKKENEEQRKIQSPYSGCKGLADLGPATSLAVSTPVLPLRFSSTC

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_4|180_bp
atggaggagaaaagggagagagccaaacagtatgatgccagaagaaaaaaagaaaatgaa
gaacagaggaaaatccaaagtccttacagtggctgcaagggcctggctgatctgggccct
gctacctctctggctgtgtccactccagtcctccctctacgtttttcctcaacctgctag

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_5|158_aa
MPRSLAHFPLWPLPRGRIRPLLVLACRYKSQRRIRPKPYEVARGPRRGPTNSVQQQDLSP
STQTTLQTGLSVIIHTHTHSALRNFTIKEVLYRLPWLLLRWSVHRVVAMVDEDPLPQVSG
QFLSVLLRVQIYSSHRVGLSPLPLRPPQEAAWRLMRED

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_5|477_bp
atgccaaggtcccttgcacacttcccactctggccgcttccccgagggagaattaggccc
ctcttagtgttggcatgccggtataaatcccaacgcaggatccgccctaagccatatgag
gtagctaggggaccgcggagaggacccactaactccgtccagcagcaggacttgtcacca
tccacacaaacaacactgcaaacagggttgtctgtgatcattcacacacatacacattca
gccctccggaatttcaccatcaaggaagtactttatcgactcccgtggcttctccttcgt
tggtctgtgcacagagtcgtcgccatggtagatgaggatcctttaccccaggttagtggc
cagtttctttccgtgttgctgagagtccagatttattcatcacaccgggtgggtctcagc
cccttacccctaaggccaccacaagaggcggcatggcgcctcatgagagaggactag

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_6|274_aa
MAPWAEAEHSALNPLRAVWLTLTAAFLLTLLLQLLPPGLLPGCAIFQDLIRYGKTKCGEP
SRPAACRAFDVPKRATPYFCSNFSISGITQSVIQGIHLVYRQSIIDCTKSGLAFMEKLIK
VGINEDVKGCSLHETAEGVHDGEMIFFPLLYHLSAVEWLPALVPYSISVPGSTFSKLASW
FAQNSRGGTVPGLRRLFECLYVSVFSNVMIHVVQYCFGLVYYVLVGLTVLSQVPMDGRNG
MSVVAFCQPVPWKGLSFLVGSAGSPPKGTLQSAW

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_6|825_bp
atggctccctgggcggaggccgagcactcggcgctgaacccgctgcgcgcggtgtggctc
acgctgaccgccgccttcctgctgaccctactgctgcagctcctgccgcccggcctgctc
ccgggctgcgcgatcttccaggacctgatccgctatgggaaaaccaagtgtggggagccg
tcgcgccccgccgcctgccgagcctttgatgtccccaagagagccactccatacttctgc
tccaatttctcaatttcaggcattacacaatcagttatacaaggaatacacttggtatac
agacagtccatcattgactgcactaagtctggtttggcttttatggaaaagttgataaag
gttggtatcaatgaggatgtgaagggctgtagccttcacgaaactgccgaaggggtccat
gatggagaaatgatatttttcccacttttatatcatctcagtgctgtggaatggcttcct
gctttggtgccttactcaatctctgttcctgggagcaccttttccaagctggcttcatgg
tttgctcagaattctcggggcggcacagttccaggcttacgaagactcttcgagtgcctc
tacgtcagtgtcttctccaatgtcatgattcacgtcgtgcagtactgttttggacttgtc
tattatgtccttgttggcctaactgtgctgagccaagtgccaatggatggcaggaatggc
atgtctgtggtggcattctgccagccagtaccatggaaggggctgtcattcctggtgggc
agtgctggttctccccctaaaggaactttgcagagcgcttggtga

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_7|264_aa
MKLQRKFNKQKKKALHSGEGTWRRVAAFTVSSLVDYTSVEMFLLKMMQGERQSYKVGIHN
FSILPHFPIKMKEKKLVRSPSLSEAGIHYPAQGVTFIFMAQCDCKSSSIQVPSRRMEDWL
EKQGDTGYASEPFPVFGAAAIAVLTVTPAARHHHHCNWAQEEGKNTDLLRTCGANHWLQK
SKQGLPSAQQEAVSLVGGLTEETNVSTDNGQEPEALEPRGNPKKLIQVREPRIMQFHMAT
SKQESVNDSKGLMKIHRSTCVSLF

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_7|795_bp
atgaagttgcagcgaaagtttaataagcaaaagaagaaagctctccacagtggagagggg
acctggaggagggttgctgcttttacagtatcttcccttgtggactacaccagtgtcgaa
atgttcttgctaaaaatgatgcagggagaaagacaaagttacaaagttggcatccacaat
ttttccatcttgccccacttcccaattaaaatgaaggaaaaaaaattggtgaggtctcca
tccctgtctgaagcaggcatccattatcctgcccagggggtgacctttatcttcatggcc
cagtgtgactgcaagagctctagcatccaagttcccagcagaaggatggaggactggctg
gaaaaacaaggagacacagggtatgcatcagagccctttcctgtctttggagccgcagcc
attgctgtcctgactgttactcctgctgcccgccaccatcaccactgcaactgggcccag
gaagaagggaaaaacacagaccttctgaggacctgcggagcaaaccactggcttcagaaa
agcaaacagggacttccctctgcgcagcaggaagcagttagcctagtcggaggcttgact
gaagaaacaaatgtatccactgataatgggcaagagcctgaggctctggagccaaggggg
aaccctaaaaagctgattcaagtaagagaaccaaggatcatgcaattccacatggccacc
tcgaagcaggaatccgttaatgatagtaaaggactgatgaaaatccaccggtctacctgt
gtcagtttattttaa

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_8|320_aa
MAAAAPGNGRASAPRLLLLFLVPLLWAPAAVRAGPDEDLSHRNKEPPAPAQQLQPQPVAV
QGPEPARVEKIFTPAAPVHTNKEDPATQTNLGFIHAFVAAISVIIVSELGDKTFFIAAIM
AMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPRVYTYYVSTVLFAIFGIRMLREGLK
MSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQA
LTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTV
LLMELDCFSAPSVKQTALRQ

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_8|963_bp
atggcggccgcggctccagggaacggccgcgcatcggcgccccggctgcttctgctcttt
ctggttccgctgctgtgggccccggctgcggtccgggccggcccagatgaagaccttagc
caccggaacaaagaaccgccggcgccggcccagcagctgcagccgcagcctgtggctgtg
cagggccccgagccggcccgggtcgagaaaatatttacaccagcagctccagttcatacc
aataaagaagatcctgctacccaaactaatttgggatttatccatgcatttgtcgctgcc
atatcagttattattgtatctgaattgggtgataagacattttttatagcagccatcatg
gcaatgcgctataaccgcctgaccgtgctggctggtgcaatgcttgccttgggactaatg
acatgcttgtcagttttgtttggctatgccaccacagtcatccccagggtctatacatac
tatgtttcaactgtattatttgccatttttggcattagaatgcttcgggaaggcttaaag
atgagccctgatgagggtcaagaggaactggaagaagttcaagctgaattaaagaagaaa
gatgaagaatttcaacgaaccaaacttttaaatggaccgggagatgttgaaacgggtaca
agcataacagtacctcagaaaaagtggttgcattttatttcacccatttttgttcaagct
cttacattaacattcttagcagaatggggtgatcgctctcaactaactacaattgtattg
gcagctagagaggacccctatggtgtagccgtgggtggaactgtggggcactgcctgtgc
acgggattggcagtaattggaggaagaatgatagcacagaaaatctctgtcagaactgtg
ctcttgatggagctggactgcttcagtgctcctagcgtcaagcagactgctttaaggcaa
tga

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_9|646_aa
MTTFPVTAVLPHGGPGLHCNESIFHQHLWPRKSSSTLLIKVAATFVIWFGRLKKITQVEN
FEKDQTGRQKGKPYNPSNKISSSAHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKE
MCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCH
EHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRAER
RRELGIEESLPETAADKSQDSGSDNRINTVSLKEALERFDHSPTPSASSRSSRKSSHTAV
SDPSSTPTKIPTDTSTPPRQHLPAHEKMVQRRSSFSSQFSAQLGAMQHLKDQLEQRTRMI
EANIHRQQEELRKIQEQLQMVHGQGLQMFLQQSNPGLNFGSVQLSSGNSSNIQQLAPINM
QGQVVPTNQIQSGMNTGHIGTTQHMIQQQTLQSTSTQSQQNVLSGHSQQTSLPSQTQSTL
TAPLYNTMVISQPAAGSMVQIPSSMPQNSTQSAAVTTFTQDRQIRFSQGQQLVTKLVTAP
VACGAVMVPSTMLMGQVVTAYPTFATQQQQSQTLSVTQQQQQQSSQEQQLTSVQQPSQAQ
LTQPPQQFLQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQPQ

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_9|1941_bp
atgactacttttcctgtaacagctgttttgcctcatggaggtccaggtcttcattgcaat
gaaagcatctttcaccagcatctctggcctagaaagagcagcagtaccttgcttataaaa
gttgctgccactttcgtcatctggtttgggagattaaaaaaaatcactcaggtagaaaat
tttgaaaaggaccagactgggagacaaaaaggaaaaccatataatcctagcaataaaata
tcctcttcagcacacaatggttttgaaggaactatacaacgcacacataggccatcttat
gaagatagagtttgttttgtagctactgtcaggttagctacacctcagttcatcaaggaa
atgtgcactgttgaagaacccaatgaagagtttacatctagacatagtttagaatggaag
tttctgtttctagatcacagggcaccacccataatagggtatttgccatttgaagttctg
ggaacatcaggctatgattactatcatgtggatgacctagaaaatttggcaaaatgtcat
gagcacttaatgcaatatgggaaaggcaaatcatgttattataggttcctgactaagggg
caacagtggatttggcttcagactcattattatatcacttaccatcagtggaattcaagg
ccagagtttattgtttgtactcacactgtagtaagttatgcagaagttagggctgaaaga
cgacgagaacttggcattgaagagtctcttcctgagacagctgctgacaaaagccaagat
tctgggtcagataatcgtataaacacagtcagtctcaaggaagcattggaaaggtttgat
cacagcccaaccccttctgcctcttctcggagttcaagaaaatcatctcacacggccgtc
tcagacccttcctcaacaccaaccaagatcccgacggatacgagcactccacccaggcag
catttaccagctcatgagaagatggtgcaaagaaggtcatcatttagtagtcagttttca
gctcaattaggagccatgcaacatctgaaagaccaattggaacaacggacacgcatgata
gaagcaaatattcatcggcaacaagaagaactaagaaaaattcaagaacaacttcagatg
gtccatggtcaggggctgcagatgtttttgcaacaatcaaatcctgggttgaattttggt
tccgttcaactttcttctggaaattcatctaatatccagcaacttgcacctataaatatg
caaggccaagttgttcctactaaccagattcaaagtggaatgaatactggacacattggc
acaactcagcacatgatacaacaacagactttacagagtacatcaactcagagtcaacaa
aatgtactgagtgggcacagtcagcaaacatctctacccagtcagacacagagcactctt
acagccccactgtataacactatggtgatttctcagcctgcagccggaagcatggtccag
attccatctagtatgccacaaaacagcacccagagtgctgcagtaactacattcactcag
gacaggcagataagattttctcaaggtcaacaacttgtgaccaaattagtgactgctcct
gtagcttgtggggcagtcatggtacctagtactatgcttatgggccaggtggtgactgca
tatcctacttttgctacacaacagcaacagtcacagacattgtcagtaacgcagcagcag
cagcagcagagctcccaggagcagcagctcacttcagttcagcaaccatctcaggctcag
ctgacccagccaccgcaacaatttttacagagcaccttccctcagtcacatcaccagcaa
catcagtctcagcaacagcagcaactcagccggcacaggactgacagcttgcccgaccct
tccaaggttcaaccacagtag

>gi568815594f:55246337_55470088|GENSCAN_predicted_peptide_10|44_aa
MTEVFQKGTVITGDDSMPIVSPEDPPMGQDVEVEDSDVDDPDPA

>gi568815594f:55246337_55470088|GENSCAN_predicted_CDS_10|135_bp
atgactgaggtatttcaaaagggcactgttattacaggagatgactccatgcctattgtt
tctcctgaagaccctccaatgggacaagatgtggaggtggaggacagtgatgttgatgat
cctgaccccgcgtag